View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2114_low_29 (Length: 237)
Name: NF2114_low_29
Description: NF2114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2114_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 16 - 174
Target Start/End: Original strand, 4685143 - 4685301
Alignment:
| Q |
16 |
gaattgtctatacaaaatacttttcttttctgccacactaaatataaaattagtaacttcattatcctctcccattttaaaaataatatcaattctctct |
115 |
Q |
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| T |
4685143 |
gaattgtctatacaaaatacttttcttttctgccacactaaatataaaattagtaacttcattatcctctcccattttaaaaataatatcaattctctct |
4685242 |
T |
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| Q |
116 |
cctataattcttctgactcaagggttgtaaagatagagtagcttaccccaatcaatcat |
174 |
Q |
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| T |
4685243 |
cctataattcttctgactcaagggttgtaaagatagagtagcttaccccaatcaatcat |
4685301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 41 - 174
Target Start/End: Complemental strand, 24677549 - 24677405
Alignment:
| Q |
41 |
ttttctgccacactaaatataaaattagtaacttcattatcctctcccattttaaaaataatatcaatt------------ctctctcctataattcttc |
128 |
Q |
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||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||| || | ||||||||||||||||||| |
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| T |
24677549 |
ttttctgccacactaaaaataaaattagtaacttctttatcctctcccattttaaaa-taatattaaataataaactaacactctctcctataattcttc |
24677451 |
T |
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| Q |
129 |
tgactcaagggttgtaaagatagagtagcttaccccaatcaatcat |
174 |
Q |
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| T |
24677450 |
tgactcgaggattgtaaagatagagtagcttaccccaatcaatcat |
24677405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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