View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2114_low_31 (Length: 227)
Name: NF2114_low_31
Description: NF2114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2114_low_31 |
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| [»] chr1 (2 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 4685572 - 4685346
Alignment:
| Q |
1 |
tggacgagtaacaaatttatcaaggnnnnnnngaaaggatacaaacatgtaaatatattgaaaaaattagggttatgaaaatattaccaattttttgtgg |
100 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4685572 |
tggacgagtaacaaatttatcaaggaaaaaaagaaaggatacaaacatgtaaatatattgaaaaaattagggttatgaaaatattaccaattttttgtgg |
4685473 |
T |
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| Q |
101 |
gagagcaatccagttaccaccagtaccatgttgttctatgtaagatttgagtttagaatcttcttctggagaccatggacctttcttcacgtttgctttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4685472 |
gagagcaatccagttaccaccagtaccatgttgttctatgtaagatttgagtttagaatcttcttctggagaccatggacctttcttcacgtttgctttg |
4685373 |
T |
|
| Q |
201 |
tcacaacaaggagctctacccatgttt |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
4685372 |
tcacaacaaggagctctacccatgttt |
4685346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 158 - 224
Target Start/End: Original strand, 4612023 - 4612089
Alignment:
| Q |
158 |
atcttcttctggagaccatggacctttcttcacgtttgctttgtcacaacaaggagctctacccatg |
224 |
Q |
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|||||| || ||||||||||| ||| |||| || ||| |||||||||||||||||||||| |||||| |
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| T |
4612023 |
atcttcatcaggagaccatggtcctctcttaactttttctttgtcacaacaaggagctcttcccatg |
4612089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 102 - 227
Target Start/End: Complemental strand, 5113289 - 5113164
Alignment:
| Q |
102 |
agagcaatccagttaccaccagtaccatgttgttctatgtaagatttgagtttagaatcttcttctggagaccatggacctttcttcacgtttgctttgt |
201 |
Q |
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| T |
5113289 |
agagcaatccaatttccaccagtaccattttgttctatgtaagacttgagtttagcatcttcttcaggtgaccatggaccttttttgacattggctttgt |
5113190 |
T |
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| Q |
202 |
cacaacaaggagctctacccatgttt |
227 |
Q |
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|||| ||||||||||| ||||||||| |
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| T |
5113189 |
cacagcaaggagctcttcccatgttt |
5113164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 84 - 223
Target Start/End: Complemental strand, 53557141 - 53557002
Alignment:
| Q |
84 |
ttaccaattttttgtgggagagcaatccagttaccaccagtaccatgttgttctatgtaagatttgagtttagaatcttcttctggagaccatggacctt |
183 |
Q |
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|||||||||||||| || ||||||||||| || || ||||| |||| | ||| ||||||||||||||| ||| ||||||||| |||||||| || |||| |
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| T |
53557141 |
ttaccaattttttgaggaagagcaatccaatttcctccagttccatttgtttcaatgtaagatttgagtgtagcatcttcttcaggagaccaaggtcctt |
53557042 |
T |
|
| Q |
184 |
tcttcacgtttgctttgtcacaacaaggagctctacccat |
223 |
Q |
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| T |
53557041 |
tcttcacgttagccttgtcacagcatggagctctacccat |
53557002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 108 - 226
Target Start/End: Original strand, 40254566 - 40254684
Alignment:
| Q |
108 |
atccagttaccaccagtaccatgttgttctatgtaagatttgagtttagaatcttcttctggagaccatggacctttcttcacgtttgctttgtcacaac |
207 |
Q |
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|||||||||||||| ||||||||||||| || |||| ||||||||| || |||||||| || |||||||||||| |||| || || ||||||||||||| |
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| T |
40254566 |
atccagttaccacctgtaccatgttgttgaatataagctttgagtttggagtcttcttcaggtgaccatggacctctcttgacattggctttgtcacaac |
40254665 |
T |
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| Q |
208 |
aaggagctctacccatgtt |
226 |
Q |
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|||||||||| |||||||| |
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| T |
40254666 |
aaggagctctccccatgtt |
40254684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 102 - 223
Target Start/End: Complemental strand, 21173623 - 21173502
Alignment:
| Q |
102 |
agagcaatccagttaccaccagtaccatgttgttctatgtaagatttgagtttagaatcttcttctggagaccatggacctttcttcacgtttgctttgt |
201 |
Q |
| |
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|||| |||||| || |||||||| ||||||| ||||||||| ||| || || |||||||||||||| |||||||||||| |||| || ||| ||||| |
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| T |
21173623 |
agagaaatccaatttccaccagtgccatgtttctctatgtaatctttaagctttgaatcttcttctggtgaccatggacctctcttaacacttgttttgt |
21173524 |
T |
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| Q |
202 |
cacaacaaggagctctacccat |
223 |
Q |
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||||||| |||||||| ||||| |
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| T |
21173523 |
cacaacatggagctcttcccat |
21173502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 92 - 223
Target Start/End: Original strand, 40820104 - 40820235
Alignment:
| Q |
92 |
tttttgtgggagagcaatccagttaccaccagtaccatgttgttctatgtaagatttgagtttagaatcttcttctggagaccatggacctttcttcacg |
191 |
Q |
| |
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|||||| || |||| |||||| || |||||||| ||||| | |||||| || |||||| || | |||||||||||| |||||||| ||||||||||| |
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| T |
40820104 |
tttttgaggaagagaaatccaatttccaccagttccatgcttttctatatactctttgagctttgtatcttcttctggtgaccatggtcctttcttcaca |
40820203 |
T |
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| Q |
192 |
tttgctttgtcacaacaaggagctctacccat |
223 |
Q |
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|||||||||||||| ||||||||||| ||||| |
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| T |
40820204 |
tttgctttgtcacagcaaggagctcttcccat |
40820235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 85 - 211
Target Start/End: Original strand, 47846978 - 47847104
Alignment:
| Q |
85 |
taccaattttttgtgggagagcaatccagttaccaccagtaccatgttgttctatgtaagatttgagtttagaatcttcttctggagaccatggaccttt |
184 |
Q |
| |
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||||||| |||||||| | || |||||||||||||| || ||||| | || ||||| |||||||| || |||||||||||| ||||| || ||||| |
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| T |
47846978 |
taccaatcttttgtggcaaagtgatccagttaccaccggttccatgctcttggatgtaggatttgagcttgtcatcttcttctggtgaccaaggtccttt |
47847077 |
T |
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| Q |
185 |
cttcacgtttgctttgtcacaacaagg |
211 |
Q |
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||||||||||||||||||||| ||||| |
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| T |
47847078 |
cttcacgtttgctttgtcacagcaagg |
47847104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 86 - 223
Target Start/End: Original strand, 41208777 - 41208914
Alignment:
| Q |
86 |
accaattttttgtgggagagcaatccagttaccaccagtaccatgttgttctatgtaagatttgagtttagaatcttcttctggagaccatggacctttc |
185 |
Q |
| |
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||||| ||||| ||| |||| ||||||||| || ||||| ||||||| |||||||| || ||||| | ||||||||| |||||||||||||||||| |
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| T |
41208777 |
accaactttttttggcagagtaatccagtttcctccagttccatgtttctctatgtattcctttagttttgcatcttcttcaggagaccatggacctttc |
41208876 |
T |
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| Q |
186 |
ttcacgtttgctttgtcacaacaaggagctctacccat |
223 |
Q |
| |
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|| || || ||||||||||| ||||||| ||| ||||| |
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| T |
41208877 |
tttacattagctttgtcacagcaaggagatcttcccat |
41208914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 224
Target Start/End: Complemental strand, 34357224 - 34357170
Alignment:
| Q |
170 |
agaccatggacctttcttcacgtttgctttgtcacaacaaggagctctacccatg |
224 |
Q |
| |
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||||||||||||| | ||||| |||| |||||||||||| ||||| ||||||||| |
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| T |
34357224 |
agaccatggacctcttttcacttttgatttgtcacaacatggagccctacccatg |
34357170 |
T |
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