View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2114_low_34 (Length: 218)
Name: NF2114_low_34
Description: NF2114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2114_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 145; Significance: 2e-76; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 41091153 - 41090958
Alignment:
| Q |
1 |
acatatctttatctttaaattaaaataagaaagnnnnnnnnnctaacaaatcctaaaaatactctaacaaatatttaaatcttaatgatattttaaggtt |
100 |
Q |
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| T |
41091153 |
acatatctttatctttaaattaaaataagaaa-----aaaaactaacaaatcctaaaaatactctaacaaatatttaaatcttaatgatattttaaggtt |
41091059 |
T |
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| Q |
101 |
ttaatttatataaactgatggtgtaaannnnnnnaaagcatacatctaatcaaatcacacttttagattagttcctaaaaatgattttattggatgcaaa |
200 |
Q |
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| T |
41091058 |
ttaatttatataaactgatggtgtaaaactttttaaagcatacatctaatcaaatcacacttttagattagttcctaaaaatgattttattggatgcaaa |
41090959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 112
Target Start/End: Complemental strand, 41079826 - 41079749
Alignment:
| Q |
43 |
ctaacaaatcctaaaaatactctaacaa-------atatttaaatcttaatgata-ttttaaggttttaatttatata |
112 |
Q |
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|||||||||||||||||||||||||||| | |||||||||||||||||| ||||||| ||||||||||||| |
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| T |
41079826 |
ctaacaaatcctaaaaatactctaacaaaatattcaaatttaaatcttaatgatacctttaaggatttaatttatata |
41079749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 198
Target Start/End: Complemental strand, 41079680 - 41079650
Alignment:
| Q |
168 |
ttagttcctaaaaatgattttattggatgca |
198 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
41079680 |
ttagttcctaaaaatgattttattggatgca |
41079650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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