View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2114_low_35 (Length: 208)
Name: NF2114_low_35
Description: NF2114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2114_low_35 |
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Alignment Details
Target: chr2 (Bit Score: 141; Significance: 4e-74; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 19 - 187
Target Start/End: Original strand, 40094360 - 40094528
Alignment:
| Q |
19 |
aaagaaggtgtttatctggattcctgttccctttctaatttgttatgcttcactttatgttgagtatgactcatagtttacttatatgtgagtaggttgc |
118 |
Q |
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| T |
40094360 |
aaagaaggtgtttatctggattcatgttccctttctaatttgttatggttcactttatgttgagtatgactcttagtttaattatatgtgagtaggttgc |
40094459 |
T |
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| Q |
119 |
ttgagctggtgagaataatagaaaataaactaatcaactcatagtatttaaacacaagcagtaatatgt |
187 |
Q |
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| T |
40094460 |
ttgagttggtgagaataatagaaaataaactaatcaactcatagtatttaaacacaggtagtaatatgt |
40094528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 91 - 187
Target Start/End: Original strand, 40082164 - 40082260
Alignment:
| Q |
91 |
atagtttacttatatgtgagtaggttgcttgagctggtgagaataatagaaaataaactaatcaactcatagtatttaaacacaagcagtaatatgt |
187 |
Q |
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| T |
40082164 |
atagtttactgatatgtgagtaggttgcttgagctgatcagaataatagaaaatcaactaaccaattaattgtatttaaacacaagcagtaatatgt |
40082260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 40063728 - 40063782
Alignment:
| Q |
19 |
aaagaaggtgtttatctggattcctgttccctttctaatttgttatgcttcactt |
73 |
Q |
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| T |
40063728 |
aaagaaggtgtttatctgaattcttgttcccttgctaatttgttatgtttcactt |
40063782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 40082078 - 40082130
Alignment:
| Q |
19 |
aaagaaggtgtttatctggattcctgttccctttctaatttgttatgcttcac |
71 |
Q |
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| T |
40082078 |
aaagaaggtgtttatctgaactcctgttcccttactaatttgttatgtttcac |
40082130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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