View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2114_low_36 (Length: 202)
Name: NF2114_low_36
Description: NF2114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2114_low_36 |
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Alignment Details
Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 15 - 191
Target Start/End: Complemental strand, 43288476 - 43288299
Alignment:
| Q |
15 |
cacaaatcaaattagaagaaacatggagattgataatcttctgtcccttgtgtattgctcaaagcaatatatatgttggcttatttagtagaaccagagt |
114 |
Q |
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| T |
43288476 |
cacaaatcaaattagaagaaacatgcagattgataatcttctgtcccttgtgtattgctcaaagcaatatatatgttggcttatttagtagaaccagagt |
43288377 |
T |
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| Q |
115 |
tgccactcct-agtgagtttaaagcagttaatttttacgcctttaattttctattggtctttgtacccatttgcctat |
191 |
Q |
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| T |
43288376 |
tgccactcatcagtgagtttaaagcagttaatttttacgcctttaatttgctattggcctttgtacccttttgcctat |
43288299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 44643631 - 44643596
Alignment:
| Q |
1 |
tccatcaaaatcttcacaaatcaaattagaagaaac |
36 |
Q |
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| T |
44643631 |
tccatcaaaatcttcacaaatcaaattagaagaaac |
44643596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 12141592 - 12141628
Alignment:
| Q |
3 |
catcaaaatcttcacaaatcaaattagaagaaacatg |
39 |
Q |
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| T |
12141592 |
catcaaaatcttcacaaatcaaattaaaagaaacatg |
12141628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 14433537 - 14433572
Alignment:
| Q |
1 |
tccatcaaaatcttcacaaatcaaattagaagaaac |
36 |
Q |
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| T |
14433537 |
tccatcaaaatcttcacaaattaaattagaagaaac |
14433572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 11634107 - 11634140
Alignment:
| Q |
3 |
catcaaaatcttcacaaatcaaattagaagaaac |
36 |
Q |
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|||||||||||||||||||||||||||| ||||| |
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| T |
11634107 |
catcaaaatcttcacaaatcaaattagaggaaac |
11634140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 17028534 - 17028506
Alignment:
| Q |
1 |
tccatcaaaatcttcacaaatcaaattag |
29 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
17028534 |
tccatcaaaatcttcacaaatcaaattag |
17028506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 17558970 - 17558942
Alignment:
| Q |
1 |
tccatcaaaatcttcacaaatcaaattag |
29 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
17558970 |
tccatcaaaatcttcacaaatcaaattag |
17558942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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