View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2114_low_6 (Length: 445)

Name: NF2114_low_6
Description: NF2114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2114_low_6
NF2114_low_6
[»] chr7 (9 HSPs)
chr7 (13-430)||(24016280-24016697)
chr7 (173-423)||(26256426-26256676)
chr7 (202-423)||(26229897-26230118)
chr7 (202-423)||(26217647-26217868)
chr7 (82-153)||(26237177-26237248)
chr7 (374-428)||(24035603-24035657)
chr7 (82-132)||(26217530-26217580)
chr7 (82-135)||(26236426-26236479)
chr7 (374-423)||(26237466-26237515)
[»] chr3 (1 HSPs)
chr3 (374-429)||(36339967-36340022)
[»] chr5 (1 HSPs)
chr5 (354-423)||(23086614-23086683)
[»] chr6 (2 HSPs)
chr6 (374-416)||(19746870-19746912)
chr6 (377-416)||(33568839-33568878)
[»] scaffold0707 (1 HSPs)
scaffold0707 (377-416)||(5233-5272)


Alignment Details
Target: chr7 (Bit Score: 378; Significance: 0; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 13 - 430
Target Start/End: Original strand, 24016280 - 24016697
Alignment:
Q  13 aatatctgcagaattacggtcgtttcattgcagaatcccacaagatcataacagaagtcgtttagagctttttaagtttgcctttggttatgatgattca 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  24016280 aatatctgcagaattacggtcgtttcattgcagaatcccacaagaacataacagcagtcgtttagagctttttaagttcgcctttggttatgatgattca 24016379  T
Q  113 acgaaaacttatacggttgtagcatatcgtgttgaagagaataaagattcggtgaagccaaaaagtgaagttaacgttttcaattttgatggtaacagtt 212  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  24016380 acgaaaacttataaggttgtagcgtatcgtgttgaagagaataaagattcagtgaagccaaaaagtgaggttaacgttttcaattttggtggtaacagtt 24016479  T
Q  213 ggaaaaatattcaaagttttccactgattcctcttaattggttggatgatagtaatactagtcttaacaatggaatgcatttaaatggcactgttaattg 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24016480 ggaaaaatattcaaagttttccactgattcctcttaattggttggatgatagtaatactagtcttaacaatggaatgcatttaaatggcactgttaattg 24016579  T
Q  313 gttagctattcgcgagtatttctattctcattataagtatgagtctattaccaatgttaaacaatttgtgattgtttctcttgatctttcgacggagaca 412  Q
    ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24016580 gttagctattcacgagcatttctattctcattataagtatgagtctattaccaatgttaaacaatttgtgattgtttctcttgatctttcgacggagaca 24016679  T
Q  413 tacaagcagtttctgctg 430  Q
    ||||||||||||||||||    
T  24016680 tacaagcagtttctgctg 24016697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 173 - 423
Target Start/End: Original strand, 26256426 - 26256676
Alignment:
Q  173 aaaagtgaagttaacgttttcaattttgatggtaacagttggaaaaatattcaaagttttccactgattcctcttaattggttggatgatagtaatacta 272  Q
    |||||||| || || ||||| | ||| | ||||||  |||||| ||| ||||||||||||||| ||||||||||||||||||||||| || ||||||||     
T  26256426 aaaagtgaggtcaaagtttttattttaggtggtaattgttggagaaacattcaaagttttccagtgattcctcttaattggttggattatggtaatactt 26256525  T
Q  273 gtcttaacaatggaatgcatttaaatggcactgttaattggttagctattcgcgagtatttctattctcattataagtatgagtctattaccaatgttaa 372  Q
     | |||| | |||  ||||||| | ||||||| |||||||| | ||||||| | |||||||| ||    ||||||  || |||| |||| |  ||||| |    
T  26256526 ctattaatagtggtgtgcatttgagtggcactattaattggctggctattcacaagtatttccatcaatattatatatacgagtatatttctcatgttga 26256625  T
Q  373 acaatttgtgattgtttctcttgatctttcgacggagacatacaagcagtt 423  Q
     |||||||||||| |||| ||||||||||| ||||||||||||||||||||    
T  26256626 gcaatttgtgattatttcgcttgatctttcaacggagacatacaagcagtt 26256676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 202 - 423
Target Start/End: Original strand, 26229897 - 26230118
Alignment:
Q  202 tggtaacagttggaaaaatattcaaagttttccactgattcctcttaattggttggatgatagtaatactagtcttaacaatggaatgcatttaaatggc 301  Q
    ||||||| |||||| ||||||||||||||||||  | |||||||||||| | ||| || ||||  ||||| ||||||||||||| |||||||| | ||||    
T  26229897 tggtaactgttggagaaatattcaaagttttccggtcattcctcttaatggattgaatcatagacatacttgtcttaacaatggtatgcatttgagtggc 26229996  T
Q  302 actgttaattggttagctattcgcgagtatttctattctcattataagtatgagtctattaccaatgttaaacaatttgtgattgtttctcttgatcttt 401  Q
    |||||||||||||| |||  ||   |  |||||||||||  | || | ||   || |||||| |||||| |  | ||||||||| |||| ||||||||||    
T  26229997 actgttaattggttggctggtctgaatgatttctattctattcatgaataccggtatattactaatgttgaggattttgtgattatttcgcttgatcttt 26230096  T
Q  402 cgacggagacatacaagcagtt 423  Q
    | ||||||||||||||||||||    
T  26230097 caacggagacatacaagcagtt 26230118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 202 - 423
Target Start/End: Original strand, 26217647 - 26217868
Alignment:
Q  202 tggtaacagttggaaaaatattcaaagttttccactgattcctcttaattggttggatgatagtaatactagtcttaacaatggaatgcatttaaatggc 301  Q
    |||||||  ||||| ||||||||||||||||||  | |||||||||||| | ||| || ||||  ||||| ||||||||||||| |||||||| | ||||    
T  26217647 tggtaactcttggagaaatattcaaagttttccggtcattcctcttaatggattgaatcatagacatacttgtcttaacaatggtatgcatttgagtggc 26217746  T
Q  302 actgttaattggttagctattcgcgagtatttctattctcattataagtatgagtctattaccaatgttaaacaatttgtgattgtttctcttgatcttt 401  Q
    |||||||||||||| |||  ||   |  |||||||||||  | || | ||   || |||||| |||||| |  | ||||||||| |||| ||||||||||    
T  26217747 actgttaattggttggctggtctgaatgatttctattctattcatgaataccggtatattactaatgttgaggattttgtgattatttcgcttgatcttt 26217846  T
Q  402 cgacggagacatacaagcagtt 423  Q
    | ||||||||||||||||||||    
T  26217847 caacggagacatacaagcagtt 26217868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 82 - 153
Target Start/End: Original strand, 26237177 - 26237248
Alignment:
Q  82 ttttaagtttgcctttggttatgatgattcaacgaaaacttatacggttgtagcatatcgtgttgaagagaa 153  Q
    |||| ||||||| ||||||||||||||||||| ||||||||||| |||||| || | || |||||| |||||    
T  26237177 ttttgagtttgcttttggttatgatgattcaatgaaaacttataaggttgttgcctttcatgttgatgagaa 26237248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 374 - 428
Target Start/End: Original strand, 24035603 - 24035657
Alignment:
Q  374 caatttgtgattgtttctcttgatctttcgacggagacatacaagcagtttctgc 428  Q
    ||||||||||||||||| ||||||||||| |||||  |||||||| |||| ||||    
T  24035603 caatttgtgattgtttcacttgatctttcaacggaatcatacaagaagttgctgc 24035657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 132
Target Start/End: Original strand, 26217530 - 26217580
Alignment:
Q  82 ttttaagtttgcctttggttatgatgattcaacgaaaacttatacggttgt 132  Q
    |||| ||||||  ||||||||||||||||||||||||||||| | ||||||    
T  26217530 ttttcagtttggatttggttatgatgattcaacgaaaacttacaaggttgt 26217580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 135
Target Start/End: Original strand, 26236426 - 26236479
Alignment:
Q  82 ttttaagtttgcctttggttatgatgattcaacgaaaacttatacggttgtagc 135  Q
    |||||||||  | |||||||||||||||||||| |||||||| | |||||||||    
T  26236426 ttttaagttctcgtttggttatgatgattcaacaaaaacttacaaggttgtagc 26236479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 423
Target Start/End: Original strand, 26237466 - 26237515
Alignment:
Q  374 caatttgtgattgtttctcttgatctttcgacggagacatacaagcagtt 423  Q
    |||||||||||| |||| ||||||||||||||  |||||||||| |||||    
T  26237466 caatttgtgattctttcgcttgatctttcgacaaagacatacaaacagtt 26237515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 374 - 429
Target Start/End: Original strand, 36339967 - 36340022
Alignment:
Q  374 caatttgtgattgtttctcttgatctttcgacggagacatacaagcagtttctgct 429  Q
    ||||| ||||||||||| ||||||||||||||||||||||||| ||||||| ||||    
T  36339967 caattggtgattgtttcgcttgatctttcgacggagacatacaggcagtttttgct 36340022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 354 - 423
Target Start/End: Original strand, 23086614 - 23086683
Alignment:
Q  354 agtctattaccaatgttaaacaatttgtgattgtttctcttgatctttcgacggagacatacaagcagtt 423  Q
    |||||||||| |||| ||| || ||||| |||||||| |||||||| || ||||||||||||||||||||    
T  23086614 agtctattactaatgctaagcagtttgtcattgtttcgcttgatctatcaacggagacatacaagcagtt 23086683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 374 - 416
Target Start/End: Complemental strand, 19746912 - 19746870
Alignment:
Q  374 caatttgtgattgtttctcttgatctttcgacggagacataca 416  Q
    ||||||||||||||||| |||||||||||||| ||||||||||    
T  19746912 caatttgtgattgtttcccttgatctttcgactgagacataca 19746870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 416
Target Start/End: Original strand, 33568839 - 33568878
Alignment:
Q  377 tttgtgattgtttctcttgatctttcgacggagacataca 416  Q
    |||||||||||||| |||||||||||| ||||||||||||    
T  33568839 tttgtgattgtttcccttgatctttcgccggagacataca 33568878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0707 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0707
Description:

Target: scaffold0707; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 416
Target Start/End: Original strand, 5233 - 5272
Alignment:
Q  377 tttgtgattgtttctcttgatctttcgacggagacataca 416  Q
    |||||||||||||| |||||||||||| ||||||||||||    
T  5233 tttgtgattgtttcccttgatctttcgccggagacataca 5272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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