View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2114_low_7 (Length: 439)
Name: NF2114_low_7
Description: NF2114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2114_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 10 - 413
Target Start/End: Complemental strand, 30173914 - 30173503
Alignment:
| Q |
10 |
tccaagaatatcttgtaaaagaacaagtgaatcatgtaaatatttatatacctgatggaatctcggatgaacttttccatttagatttgcaaattgcgga |
109 |
Q |
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| T |
30173914 |
tccaataatatcttgtaaaagaacaagtgaatcatgtaaatatgtatatacctgatggaatctcggatgaactcttccatttagatttgcaaattgcgga |
30173815 |
T |
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| Q |
110 |
attgaagccaagattcactaatcgatcgcatatttctgtaagcaaacatttccggcagctcaccaccggttgccggcacaagcatagcatctcagacatg |
209 |
Q |
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| T |
30173814 |
attgaagccaagattcactaatcgatcgcatatttctgtaagcaaacatttccggcagctcaccaccggttgccggcacaagcatagcatctcagacatg |
30173715 |
T |
|
| Q |
210 |
ttcaattctctcatagcctcctttatagcttgcctaacctttgtctcacctgagctagttctgcacaaagttgcctacaaatggaaac--------ataa |
301 |
Q |
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| T |
30173714 |
tttatttctctcatagcctcctttgtagcttgcctaacctttgtctcacctgagctagttctacacaaagttgcctacaaatggaaacaagaaaagaaaa |
30173615 |
T |
|
| Q |
302 |
ataaaaattagtcactttactaatggtcattagtgtannnnnnnctaattggatat-aattaaattagtaatctaccttgagaagttggtcttgttcttc |
400 |
Q |
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| T |
30173614 |
gaaaaaattagtctttttattaatagtcatgagtgca-ttttttctatttggacataaattaaattaataatctaccttgagaagttggtcttgttcctc |
30173516 |
T |
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| Q |
401 |
ccagaaagcttta |
413 |
Q |
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| T |
30173515 |
ccagaaagcttta |
30173503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 8e-28; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 23 - 157
Target Start/End: Complemental strand, 12360133 - 12359999
Alignment:
| Q |
23 |
tgtaaaagaacaagtgaatcatgtaaatatttatatacctgatggaatctcggatgaacttttc-catttagatttgcaaattgcggaattgaagccaag |
121 |
Q |
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| T |
12360133 |
tgtaaaagaacaagtgaatcatgtaaatatgtatatacctgatggaatctcggatgaactaccctaatttagatttgcaaattccggaaatgaagcc-ac |
12360035 |
T |
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| Q |
122 |
attcactaatcgatcgcatatttctgtaagcaaaca |
157 |
Q |
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| T |
12360034 |
attcaacaattgatcacatatttctctgagcaaaca |
12359999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 408
Target Start/End: Complemental strand, 12359822 - 12359793
Alignment:
| Q |
379 |
tgagaagttggtcttgttcttcccagaaag |
408 |
Q |
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| T |
12359822 |
tgagaagttggtcttgttcttcccagaaag |
12359793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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