View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2114_low_8 (Length: 435)
Name: NF2114_low_8
Description: NF2114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2114_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 1 - 417
Target Start/End: Complemental strand, 46843598 - 46843183
Alignment:
| Q |
1 |
aataatcaatcccaatcaatggaggttaaagccagagctcccggaaaaatcatcttagccggggaacatgccgttgttcacggatcaaccgccgttgctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
46843598 |
aataatcaatcccaatcaatggaggttaaagccagagctcccggaaaaatcatcttagccggggaacacgccgttgttcacggatcaaccgccgttgctt |
46843499 |
T |
|
| Q |
101 |
cttctattgacttatacacctacgtttctctccgcttttccactccttcttctggtactctctccctcactcaatcaatccttttccctctaatctcttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46843498 |
cttctattgacttatacacctacgtttctctccgcttttccactccttcttctggtactctctccctcactcaatcaatccttttccctctaatctcttt |
46843399 |
T |
|
| Q |
201 |
tgtcattacgatttaattaatttggatttttgtgctttttagagaatgaagaatcgttgagacttttgttaaaggatacggcattggaattcgaatggcc |
300 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46843398 |
tgtcattacgatttaattaatttgga-ttttgtgctttttagagaatgaagaatcgttgagacttttgttaaaggatacggcattggaattcgaatggcc |
46843300 |
T |
|
| Q |
301 |
tataagtagaataagagaagcttttcctgaatctgtttctttgttatcttcaactcctaattcatgttctgttgagtgtgctaaatcaattgcttcttta |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46843299 |
tataagtagaataagagaagcttttcctgaatctgtttctttgttatcttcaactcctaattcatgttctgttgagtgtgctaaatcaattgcttcttta |
46843200 |
T |
|
| Q |
401 |
gttgaagagcttaatat |
417 |
Q |
| |
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||||||||||||||||| |
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| T |
46843199 |
gttgaagagcttaatat |
46843183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 330 - 417
Target Start/End: Complemental strand, 11349407 - 11349320
Alignment:
| Q |
330 |
aatctgtttctttgttatcttcaactcctaattcatgttctgttgagtgtgctaaatcaattgcttctttagttgaagagcttaatat |
417 |
Q |
| |
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||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
11349407 |
aatctgtttcttttttatcttcaactcctagttcatgttctattgagtgtgctaaatcaattgcggctttagttgaagagcttaatat |
11349320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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