View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21150_low_3 (Length: 276)
Name: NF21150_low_3
Description: NF21150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21150_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 4997202 - 4997398
Alignment:
| Q |
1 |
taccctgctcccaccttcatttcttgaacatctccgacaacttattcgttggagccttaccagatttcaactcagaaatctttgaactaagagtacttga |
100 |
Q |
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| T |
4997202 |
taccctgctcccaccttcatttcttgaacatctccgacaacttattcgttggagccttaccagatttcaactcagaaatctttgaactaagagtacttga |
4997301 |
T |
|
| Q |
101 |
cgccacaggaaacaacttctccggtgacattccagcgagttttggccgattaccaaaactgaatgtgctcaatttgtctaataaccttttcacaggt |
197 |
Q |
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| T |
4997302 |
cgccacaggaaacaacttctccggtgacattccagcgagttttggccgattaccaaaactgaatgtgctcaatttgtctaataaccttttcacaggt |
4997398 |
T |
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Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 210 - 251
Target Start/End: Complemental strand, 5455345 - 5455304
Alignment:
| Q |
210 |
ctgccactcataaatatcagcacaaacactatctatatccct |
251 |
Q |
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| T |
5455345 |
ctgccactcataaatatcagcacaaacactatctatatccct |
5455304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 210 - 251
Target Start/End: Original strand, 42986424 - 42986465
Alignment:
| Q |
210 |
ctgccactcataaatatcagcacaaacactatctatatccct |
251 |
Q |
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| T |
42986424 |
ctgccactcataaatatctgcacatacactatctatatccct |
42986465 |
T |
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