View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21150_low_4 (Length: 233)
Name: NF21150_low_4
Description: NF21150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21150_low_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 14 - 216
Target Start/End: Complemental strand, 6832424 - 6832222
Alignment:
| Q |
14 |
cataggagcaacatgggtagagaaaatccaaaggaagaaggaaaaacacatttgggctaagcaagtgatgaatgaactgattcagcacgcttctttatac |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6832424 |
cataggagcaacatgggtagagaaaatccaaaggaagaaggaaaaacacattcgggctaagcaagtgatgaatgaactgattcagcacgcttctttatac |
6832325 |
T |
|
| Q |
114 |
aagtatgattttacaggaccaagtcctcgtgttgaagaacttggtggtggtgacatagataaaataaagagcaatacagaaaatgaagttattgagaaaa |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6832324 |
aagtatgattttacaggaccaagtcctcgtgttgaagaacttggtggtggtgacatagataaaataaagagcaatacagaaaatgaagttattgagaaaa |
6832225 |
T |
|
| Q |
214 |
gga |
216 |
Q |
| |
|
||| |
|
|
| T |
6832224 |
gga |
6832222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 14 - 216
Target Start/End: Complemental strand, 6817910 - 6817708
Alignment:
| Q |
14 |
cataggagcaacatgggtagagaaaatccaaaggaagaaggaaaaacacatttgggctaagcaagtgatgaatgaactgattcagcacgcttctttatac |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| |||||| ||| ||||||||||||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
6817910 |
cataggagcaacatgggtagagaaaatccaaaggaggaagaaaaaacttattcgggctaagcaagtaatgaatgaactgattcagtgcgcttctttatac |
6817811 |
T |
|
| Q |
114 |
aagtatgattttacaggaccaagtcctcgtgttgaagaacttggtggtggtgacatagataaaataaagagcaatacagaaaatgaagttattgagaaaa |
213 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| | |||||||| | |||| ||||||||||||||||||||||||||||| | ||||| ||||| |
|
|
| T |
6817810 |
aagtatgattttacaggaccaagtcctcatgttgaagatcatggtggtgataacatggataaaataaagagcaatacagaaaatgaggctattgcgaaaa |
6817711 |
T |
|
| Q |
214 |
gga |
216 |
Q |
| |
|
||| |
|
|
| T |
6817710 |
gga |
6817708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 14 - 216
Target Start/End: Complemental strand, 6809781 - 6809579
Alignment:
| Q |
14 |
cataggagcaacatgggtagagaaaatccaaaggaagaaggaaaaacacatttgggctaagcaagtgatgaatgaactgattcagcacgcttctttatac |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||| |||||||||||||||||||| |||||||||| | |
|
|
| T |
6809781 |
cataggagcaacatgggtagagaaaatccaaaggaggaaggaaaaacatattcgggctaagcaagtaatgaatgaactgattcagcatgcttctttattc |
6809682 |
T |
|
| Q |
114 |
aagtatgattttacaggaccaagtcctcgtgttgaagaacttggtggtggtgacatagataaaataaagagcaatacagaaaatgaagttattgagaaaa |
213 |
Q |
| |
|
||||||||||| |||||||||||| || ||||||||| |||||||| |||||||| ||||||||||||||||||||||||||| | ||||| ||||| |
|
|
| T |
6809681 |
aagtatgatttcacaggaccaagttctaatgttgaagagaatggtggtgatgacataggtaaaataaagagcaatacagaaaatgaggctattgcgaaaa |
6809582 |
T |
|
| Q |
214 |
gga |
216 |
Q |
| |
|
||| |
|
|
| T |
6809581 |
gga |
6809579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University