View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21151_high_1 (Length: 676)
Name: NF21151_high_1
Description: NF21151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21151_high_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 654; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 654; E-Value: 0
Query Start/End: Original strand, 1 - 654
Target Start/End: Original strand, 14812593 - 14813246
Alignment:
| Q |
1 |
tgtcaagaataatttcctcactatttccttcgaaacctttccttaatttgacatccaagaacgacgaaagaaactctggcaaattgtgattcaagttaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14812593 |
tgtcaagaataatttcctcactatttccttcgaaacctttccttaatttgacatccaagaacgacgaaagaaactctggcaaattgtgattcaagttaat |
14812692 |
T |
|
| Q |
101 |
aatgtactcaaatgatgagtccagcactccatggaattcttcatcatgattaaatgccaagtttaatatactatcatatttatctttcatgtccaaaagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14812693 |
aatgtactcaaatgatgagtccagcactccatggaattcttcatcatgattaaatgccaagtttaatatactatcatatttatctttcatgtccaaaagt |
14812792 |
T |
|
| Q |
201 |
tcttgaacaaaaatcataggatcctttaacctttttggatcttttacaaacttttcacctgtgtttctaacagagattcgctactttctgtattgtaaag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14812793 |
tcttgaacaaaaatcataggatcctttaacctttttggatcttttacaaacttttcacctgtgtttctaacagagattcgctactttctgtattgtaaag |
14812892 |
T |
|
| Q |
301 |
agtccattaggatatgtagagaaaatctggtacaagtttctcaaatcttcatatctattattaagaaagagagttactaaccaagaattttctatccgga |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14812893 |
agtccattaggatatgtagagaaaatctggtacaagtttctcaaatcttcatatctattattaagaaagagagttactaaccaagaattttctatccgga |
14812992 |
T |
|
| Q |
401 |
ttaatctaagcatgtggttttcaataatctccttgtacattgcattataaatcttcttttgacttatggaatccaagtagtggttcactctaatcaatcc |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14812993 |
ttaatctaagcatgtggttttcaataatctccttgtacattgcattataaatcttcttttgacttatggaatccaagtagtggttcactctaatcaatcc |
14813092 |
T |
|
| Q |
501 |
tttaatcaaatgattctcagctttccgtagataatcgccacaatcacaatattcacttaacttttggaactcacctctataaaactcagccgaaacttcg |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14813093 |
tttaatcaaatgattctcagctttccgtagataatcgccacaatcacaatattcacttaacttttggaactcacctctataaaactcagccgaaacttcg |
14813192 |
T |
|
| Q |
601 |
atgaaaggaatctcaaataatgtctcataaactgaatcacctaaatcttttagc |
654 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14813193 |
atgaaaggaatctcaaataatgtctcataaactgaatcacctaaatcttttagc |
14813246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 654; E-Value: 0
Query Start/End: Original strand, 1 - 654
Target Start/End: Original strand, 15259588 - 15260241
Alignment:
| Q |
1 |
tgtcaagaataatttcctcactatttccttcgaaacctttccttaatttgacatccaagaacgacgaaagaaactctggcaaattgtgattcaagttaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15259588 |
tgtcaagaataatttcctcactatttccttcgaaacctttccttaatttgacatccaagaacgacgaaagaaactctggcaaattgtgattcaagttaat |
15259687 |
T |
|
| Q |
101 |
aatgtactcaaatgatgagtccagcactccatggaattcttcatcatgattaaatgccaagtttaatatactatcatatttatctttcatgtccaaaagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15259688 |
aatgtactcaaatgatgagtccagcactccatggaattcttcatcatgattaaatgccaagtttaatatactatcatatttatctttcatgtccaaaagt |
15259787 |
T |
|
| Q |
201 |
tcttgaacaaaaatcataggatcctttaacctttttggatcttttacaaacttttcacctgtgtttctaacagagattcgctactttctgtattgtaaag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15259788 |
tcttgaacaaaaatcataggatcctttaacctttttggatcttttacaaacttttcacctgtgtttctaacagagattcgctactttctgtattgtaaag |
15259887 |
T |
|
| Q |
301 |
agtccattaggatatgtagagaaaatctggtacaagtttctcaaatcttcatatctattattaagaaagagagttactaaccaagaattttctatccgga |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15259888 |
agtccattaggatatgtagagaaaatctggtacaagtttctcaaatcttcatatctattattaagaaagagagttactaaccaagaattttctatccgga |
15259987 |
T |
|
| Q |
401 |
ttaatctaagcatgtggttttcaataatctccttgtacattgcattataaatcttcttttgacttatggaatccaagtagtggttcactctaatcaatcc |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15259988 |
ttaatctaagcatgtggttttcaataatctccttgtacattgcattataaatcttcttttgacttatggaatccaagtagtggttcactctaatcaatcc |
15260087 |
T |
|
| Q |
501 |
tttaatcaaatgattctcagctttccgtagataatcgccacaatcacaatattcacttaacttttggaactcacctctataaaactcagccgaaacttcg |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15260088 |
tttaatcaaatgattctcagctttccgtagataatcgccacaatcacaatattcacttaacttttggaactcacctctataaaactcagccgaaacttcg |
15260187 |
T |
|
| Q |
601 |
atgaaaggaatctcaaataatgtctcataaactgaatcacctaaatcttttagc |
654 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15260188 |
atgaaaggaatctcaaataatgtctcataaactgaatcacctaaatcttttagc |
15260241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 398 - 434
Target Start/End: Original strand, 14749960 - 14749996
Alignment:
| Q |
398 |
ggattaatctaagcatgtggttttcaataatctcctt |
434 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
14749960 |
ggattaatctaagcatgtgattttcaatagtctcctt |
14749996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 398 - 434
Target Start/End: Original strand, 14757879 - 14757915
Alignment:
| Q |
398 |
ggattaatctaagcatgtggttttcaataatctcctt |
434 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
14757879 |
ggattaatctaagcatgtgattttcaatcatctcctt |
14757915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 646; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 646; E-Value: 0
Query Start/End: Original strand, 1 - 654
Target Start/End: Complemental strand, 17521587 - 17520934
Alignment:
| Q |
1 |
tgtcaagaataatttcctcactatttccttcgaaacctttccttaatttgacatccaagaacgacgaaagaaactctggcaaattgtgattcaagttaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17521587 |
tgtcaagaataatttcctcactatttccttcgaaacctttccttaatttgacatccaagaacgacgaaagaaactctggcaaattgtgattcaagttaat |
17521488 |
T |
|
| Q |
101 |
aatgtactcaaatgatgagtccagcactccatggaattcttcatcatgattaaatgccaagtttaatatactatcatatttatctttcatgtccaaaagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17521487 |
aatgtactcaaatgatgagtccagcactccatggaattcttcatcatgattaaatgccaagtttaatatactatcatatttatctttcatgtccaaaagt |
17521388 |
T |
|
| Q |
201 |
tcttgaacaaaaatcataggatcctttaacctttttggatcttttacaaacttttcacctgtgtttctaacagagattcgctactttctgtattgtaaag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17521387 |
tcttgaacaaaaatcataggatcctttaacctttttggatcttttacaaacttttcacctgtgtttctaacagagattcgctactttctgtattgtaaag |
17521288 |
T |
|
| Q |
301 |
agtccattaggatatgtagagaaaatctggtacaagtttctcaaatcttcatatctattattaagaaagagagttactaaccaagaattttctatccgga |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17521287 |
agtccattaggatatgtagagaaaatctggtacaagtttctcaaatcttcatatctattattaagaaagagagttactaaccaagaattttctatccgga |
17521188 |
T |
|
| Q |
401 |
ttaatctaagcatgtggttttcaataatctccttgtacattgcattataaatcttcttttgacttatggaatccaagtagtggttcactctaatcaatcc |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17521187 |
ttaatctaagcatgtggttttcaataatctccttgtacattgcattataaatcttcttttgacttatggaatccaagtagtggttcactctaatcaatcc |
17521088 |
T |
|
| Q |
501 |
tttaatcaaatgattctcagctttccgtagataatcgccacaatcacaatattcacttaacttttggaactcacctctataaaactcagccgaaacttcg |
600 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17521087 |
tttaatcaaatgattctcagctttccatagataatcgccacaatcacaatattcacttaacttttggaactcacctctataaaactcagccgaaacttcg |
17520988 |
T |
|
| Q |
601 |
atgaaaggaatctcaaataatgtctcataaactgaatcacctaaatcttttagc |
654 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
17520987 |
atgaaaggaatctcaaataatgtctcataaactgaatcacctaaatcctttagc |
17520934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 374 - 434
Target Start/End: Original strand, 17621904 - 17621964
Alignment:
| Q |
374 |
ttactaaccaagaattttctatccggattaatctaagcatgtggttttcaataatctcctt |
434 |
Q |
| |
|
||||||||| ||||||||| || |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
17621904 |
ttactaacccagaattttccatatggattaatctaagcatgtcattttcaataatctcctt |
17621964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 398 - 434
Target Start/End: Complemental strand, 17570656 - 17570620
Alignment:
| Q |
398 |
ggattaatctaagcatgtggttttcaataatctcctt |
434 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
17570656 |
ggattaatctaagcatgtgattttcaatcatctcctt |
17570620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University