View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21151_high_16 (Length: 287)
Name: NF21151_high_16
Description: NF21151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21151_high_16 |
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Alignment Details
Target: chr8 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 19 - 249
Target Start/End: Complemental strand, 33355561 - 33355329
Alignment:
| Q |
19 |
aatattcattatatacacactctcttttttgtttccatcagttatgcatttaatgaaacagttcatcaacnnnnnnncacattctaatacttactagaaa |
118 |
Q |
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| T |
33355561 |
aatattcattatatacacactctcttttttgtttccatcagttatgcatttaatgaaacagttcatcaactttttttcacattataatacttactagcaa |
33355462 |
T |
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| Q |
119 |
aatccattggatcatgttagttagcttaaatgttatgtagcattga--tattacatattaaagatgtgtctgatgtcaaacatgtgtaggcgctcaacac |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
33355461 |
aatccattggatcatgttagttagcttaaatgttatgtagcattgatctattacatattaaagatgtgtctgatgtcaaacatgtgtaggcgttcaacat |
33355362 |
T |
|
| Q |
217 |
caacatgatacaaacacatgtagttacttttaa |
249 |
Q |
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| T |
33355361 |
ccacatgatacaaacacatgtagttacatttaa |
33355329 |
T |
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