View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21151_high_2 (Length: 666)
Name: NF21151_high_2
Description: NF21151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21151_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 579; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 579; E-Value: 0
Query Start/End: Original strand, 18 - 657
Target Start/End: Original strand, 3361005 - 3361640
Alignment:
| Q |
18 |
gagagttttctgaagtttcaaaatcttcacctcctccctcccttatgataccattgtctggtgcatgttcagtaacattgaggatgttctcatctagatg |
117 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
3361005 |
gagagttttctgaagttttaaaatcttcacctcctccctcccttatgataccattgtctggtgcatgttcagtaacattcaggatgttctcatctagatg |
3361104 |
T |
|
| Q |
118 |
ctgcttcaaattgaagaaaaacacagttaagtttgataccaagtgtgaagaagattaatatttgtgtgcaagaagaaacaacaatatcatctaaagcact |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
3361105 |
ctgcttcaaattgaagaaaaacacagttaagtttgataccaagtgtgaagaagattaatatttgtgtacaagaagaaacaacaatatcatctaaagcact |
3361204 |
T |
|
| Q |
218 |
gaacttcatgtaattaaagccaaaccttgccatgagaatcttgccgatgatcttcaagtaaagccttcattatctcatgaagtgtctcagcaggtttact |
317 |
Q |
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||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
3361205 |
gaacttcatgtaa----agccaaaccttgccatgtgaatcttgccgatgatcttcaagtaaagccttcattatttcatgaagtgtctcagcaggtttact |
3361300 |
T |
|
| Q |
318 |
atgcaataggacctgcatcgctacataatcggtatgatcactctttaaagtggtgactgcagcgtcaagttggtcgattcttttggtcaaagcactacaa |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
3361301 |
atgcaataggacctgcatcgctacataatcggtatgatcactctttaaagtggtgaccgcagcgtcaagttggtcgattcttttggtcaaagcactacaa |
3361400 |
T |
|
| Q |
418 |
caaatttcaggccagttttcatgctcagtacaggccaaatcattctcaaggcacaagagatcattttcgagtttctcaatttcaacatctgccttggtgt |
517 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3361401 |
caaatttcaggccagttttcatgctcaatacaggccaaatcattctcaaggcacaagagatcattttcgagtttctcaatttcaacatctgccttggtgt |
3361500 |
T |
|
| Q |
518 |
tcaaaattctcaaaacttgaacacatgattccacattcaaggcatgttcttcaatctcatctgcaaaactcaacagaaagctacagtaaattatcaacat |
617 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3361501 |
tcaaaattctcaaaacttgaacacatgattccacattcaaggcatgttcttcaatctcatctgcaaaactcaacagaaagctacagtaaattatcaacat |
3361600 |
T |
|
| Q |
618 |
acacggtgggatttatctcctcgaattagtcagtcctatg |
657 |
Q |
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| ||||| | |||| ||||||||||||||||||||||||| |
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| T |
3361601 |
agacggttgaatttgtctcctcgaattagtcagtcctatg |
3361640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 280 - 608
Target Start/End: Original strand, 35907360 - 35907688
Alignment:
| Q |
280 |
gccttcattatctcatgaagtgtctcagcaggtttactatgcaataggacctgcatcgctacataatcggtatgatcactctttaaagtggtgactgcag |
379 |
Q |
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||||||| ||| ||||||||| ||||||| ||| ||||| |||||| | ||||| | || ||| ||| | |||| ||||||| |||||| | || ||| |
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| T |
35907360 |
gccttcactatttcatgaagtctctcagctggtccactatccaatagtagctgcacctctgcatcatcagcatgaccactcttcaaagtgttaaccgcaa |
35907459 |
T |
|
| Q |
380 |
cgtcaagttggtcgattcttttggtcaaagcactacaacaaatttcaggccagttttcatgctcagtacaggccaaatcattctcaaggcacaagagatc |
479 |
Q |
| |
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| ||||| |||| |||| ||| |||||| || | || || ||||||||||||||||||| ||||| |||||||| ||||||| |||| || ||||| |
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| T |
35907460 |
catcaagctggttgattttttctgtcaaaccattgcagcatatttcaggccagttttcattttcagtccaggccaattcattctgaagggacgcgagatt |
35907559 |
T |
|
| Q |
480 |
attttcgagtttctcaatttcaacatctgccttggtgttcaaaattctcaaaacttgaacacatgattccacattcaaggcatgttcttcaatctcatct |
579 |
Q |
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|||| | || |||||| ||| |||||| |||||| ||| | ||||||||| |||||||| | | | ||| | ||||| ||| || || |||||| |
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| T |
35907560 |
catttccaattgctcaatctcattatctgcattggtgatcatacatctcaaaacctgaacacagcacttctcatccttggcatcttcctccatatcatct |
35907659 |
T |
|
| Q |
580 |
gcaaaactcaacagaaagctacagtaaat |
608 |
Q |
| |
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||||||||||||| |||||| |||||||| |
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| T |
35907660 |
gcaaaactcaacaaaaagctccagtaaat |
35907688 |
T |
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