View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21151_high_25 (Length: 227)

Name: NF21151_high_25
Description: NF21151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21151_high_25
NF21151_high_25
[»] chr2 (28 HSPs)
chr2 (1-209)||(14291567-14291775)
chr2 (1-209)||(11098737-11098945)
chr2 (1-209)||(9296212-9296419)
chr2 (1-209)||(3491829-3492034)
chr2 (71-209)||(25398574-25398711)
chr2 (71-209)||(25403712-25403849)
chr2 (71-209)||(25407701-25407838)
chr2 (1-205)||(40738915-40739114)
chr2 (1-185)||(36757579-36757758)
chr2 (17-209)||(28259010-28259195)
chr2 (17-205)||(23078304-23078484)
chr2 (1-60)||(25409854-25409913)
chr2 (1-177)||(34388960-34389131)
chr2 (1-54)||(39811841-39811894)
chr2 (84-186)||(10707149-10707248)
chr2 (84-186)||(8390046-8390146)
chr2 (107-186)||(39811894-39811974)
chr2 (33-186)||(8040163-8040314)
chr2 (108-186)||(32246887-32246966)
chr2 (10-53)||(32246968-32247011)
chr2 (109-209)||(42039588-42039687)
chr2 (1-60)||(21630168-21630225)
chr2 (1-60)||(10445284-10445341)
chr2 (1-60)||(14698826-14698883)
chr2 (17-60)||(17865428-17865469)
chr2 (1-60)||(20522445-20522502)
chr2 (1-60)||(33118358-33118415)
chr2 (1-60)||(33528441-33528498)
[»] chr3 (34 HSPs)
chr3 (1-209)||(2671396-2671604)
chr3 (1-209)||(40372606-40372813)
chr3 (1-209)||(8738873-8739081)
chr3 (1-209)||(9091111-9091319)
chr3 (1-209)||(7167323-7167532)
chr3 (1-209)||(8477441-8477651)
chr3 (1-209)||(28501507-28501716)
chr3 (1-209)||(28503674-28503883)
chr3 (1-209)||(26928405-26928609)
chr3 (1-209)||(1306027-1306232)
chr3 (17-209)||(32143400-32143587)
chr3 (17-209)||(27453037-27453224)
chr3 (1-205)||(27986262-27986460)
chr3 (1-205)||(33386481-33386680)
chr3 (1-209)||(27974758-27974960)
chr3 (17-209)||(16264429-16264613)
chr3 (17-209)||(6794537-6794721)
chr3 (1-54)||(22173047-22173100)
chr3 (1-209)||(8370295-8370494)
chr3 (1-186)||(36029194-36029373)
chr3 (107-209)||(22173100-22173202)
chr3 (1-178)||(35925588-35925758)
chr3 (1-186)||(40592588-40592768)
chr3 (1-209)||(21711302-21711502)
chr3 (10-53)||(18656614-18656657)
chr3 (1-60)||(3328163-3328220)
chr3 (1-60)||(4386783-4386840)
chr3 (1-60)||(26299211-26299268)
chr3 (1-60)||(47923710-47923767)
chr3 (19-60)||(10274605-10274646)
chr3 (1-60)||(1736110-1736167)
chr3 (17-60)||(3323513-3323554)
chr3 (1-60)||(8126853-8126910)
chr3 (1-60)||(24694972-24695029)
[»] chr8 (27 HSPs)
chr8 (1-209)||(4759884-4760093)
chr8 (1-209)||(33037618-33037825)
chr8 (1-209)||(30655725-30655933)
chr8 (1-209)||(10688950-10689161)
chr8 (1-205)||(18870371-18870575)
chr8 (1-209)||(36979456-36979663)
chr8 (1-205)||(18852977-18853181)
chr8 (1-209)||(1261767-1261972)
chr8 (1-209)||(6311375-6311585)
chr8 (1-209)||(31071042-31071247)
chr8 (1-205)||(26287974-26288174)
chr8 (1-205)||(26301231-26301431)
chr8 (1-205)||(26313225-26313425)
chr8 (1-209)||(7412420-7412620)
chr8 (1-209)||(19175571-19175772)
chr8 (17-209)||(4456107-4456292)
chr8 (1-54)||(7289778-7289831)
chr8 (107-209)||(7289831-7289933)
chr8 (1-54)||(25328005-25328058)
chr8 (1-54)||(25328131-25328184)
chr8 (107-186)||(25328184-25328264)
chr8 (10-53)||(39784685-39784728)
chr8 (143-209)||(19752347-19752412)
chr8 (1-186)||(23799393-23799573)
chr8 (1-60)||(4696425-4696482)
chr8 (4-60)||(9054240-9054294)
chr8 (1-60)||(5702297-5702354)
[»] chr7 (35 HSPs)
chr7 (1-209)||(20357357-20357566)
chr7 (1-209)||(2058044-2058255)
chr7 (1-209)||(1533254-1533462)
chr7 (1-209)||(21639887-21640092)
chr7 (1-205)||(21646089-21646290)
chr7 (1-209)||(18413718-18413922)
chr7 (1-209)||(18408842-18409046)
chr7 (17-209)||(2479415-2479600)
chr7 (33-205)||(21983369-21983536)
chr7 (1-188)||(47263764-47263946)
chr7 (106-209)||(12406409-12406512)
chr7 (1-54)||(12397091-12397144)
chr7 (1-54)||(31109436-31109489)
chr7 (1-52)||(4873310-4873361)
chr7 (1-52)||(12406513-12406564)
chr7 (72-209)||(44848568-44848702)
chr7 (33-186)||(29159904-29160055)
chr7 (107-174)||(12397024-12397091)
chr7 (1-54)||(24024179-24024232)
chr7 (1-205)||(21988991-21989188)
chr7 (143-209)||(2580469-2580533)
chr7 (143-205)||(9185128-9185189)
chr7 (143-209)||(9189961-9190026)
chr7 (1-60)||(4796485-4796542)
chr7 (1-60)||(20284312-20284369)
chr7 (1-60)||(23402830-23402887)
chr7 (107-186)||(24024232-24024312)
chr7 (17-60)||(2580613-2580654)
chr7 (1-60)||(2647514-2647571)
chr7 (17-60)||(9185007-9185048)
chr7 (17-60)||(9189840-9189881)
chr7 (10-53)||(21812099-21812143)
chr7 (107-171)||(31109489-31109553)
chr7 (1-60)||(44847942-44847999)
chr7 (1-60)||(46516122-46516179)
[»] chr4 (32 HSPs)
chr4 (1-209)||(24742019-24742227)
chr4 (1-209)||(29760720-29760928)
chr4 (1-205)||(28468351-28468553)
chr4 (17-209)||(31985466-31985652)
chr4 (1-206)||(5396488-5396686)
chr4 (1-205)||(8689313-8689509)
chr4 (1-54)||(51520637-51520690)
chr4 (1-178)||(16623110-16623281)
chr4 (1-54)||(18712618-18712671)
chr4 (107-209)||(51520535-51520637)
chr4 (72-200)||(5147766-5147891)
chr4 (1-133)||(16628689-16628815)
chr4 (1-209)||(3777628-3777829)
chr4 (1-54)||(9224259-9224312)
chr4 (1-54)||(9229046-9229099)
chr4 (107-186)||(9224312-9224392)
chr4 (107-186)||(9229099-9229179)
chr4 (10-53)||(45347678-45347721)
chr4 (108-186)||(45357203-45357282)
chr4 (1-54)||(3814202-3814255)
chr4 (10-53)||(5732844-5732887)
chr4 (108-186)||(45347723-45347802)
chr4 (107-186)||(3814123-3814202)
chr4 (1-60)||(36315047-36315104)
chr4 (1-60)||(36329256-36329313)
chr4 (10-53)||(18855906-18855949)
chr4 (10-53)||(45357158-45357201)
chr4 (1-178)||(5269017-5269190)
chr4 (17-60)||(5112460-5112501)
chr4 (1-60)||(6743232-6743289)
chr4 (17-60)||(10047604-10047645)
chr4 (1-60)||(25861850-25861907)
[»] chr6 (20 HSPs)
chr6 (1-209)||(5674580-5674788)
chr6 (1-205)||(22709091-22709290)
chr6 (1-209)||(21356115-21356317)
chr6 (17-209)||(5757311-5757496)
chr6 (107-209)||(11857052-11857154)
chr6 (1-54)||(11857154-11857207)
chr6 (1-54)||(14737429-14737482)
chr6 (1-54)||(22010549-22010602)
chr6 (1-54)||(14742289-14742342)
chr6 (107-209)||(22010602-22010704)
chr6 (107-186)||(28184604-28184684)
chr6 (10-53)||(28155432-28155475)
chr6 (107-186)||(14737482-14737562)
chr6 (107-186)||(14742342-14742422)
chr6 (10-53)||(6438680-6438723)
chr6 (108-186)||(28155477-28155555)
chr6 (1-54)||(28184684-28184740)
chr6 (1-60)||(5017313-5017370)
chr6 (17-60)||(5572076-5572117)
chr6 (1-60)||(31936798-31936855)
[»] chr1 (29 HSPs)
chr1 (1-209)||(24787174-24787383)
chr1 (1-209)||(24202582-24202787)
chr1 (1-209)||(19358657-19358861)
chr1 (1-209)||(19361246-19361450)
chr1 (1-179)||(19366121-19366297)
chr1 (32-209)||(19379916-19380090)
chr1 (2-209)||(13604440-13604641)
chr1 (1-209)||(3281787-3281987)
chr1 (21-209)||(26644735-26644915)
chr1 (1-54)||(41390760-41390813)
chr1 (1-54)||(41398415-41398468)
chr1 (1-209)||(21536387-21536587)
chr1 (1-188)||(37069865-37070047)
chr1 (107-186)||(41390680-41390760)
chr1 (107-186)||(41398335-41398415)
chr1 (143-209)||(32889518-32889583)
chr1 (109-186)||(47703855-47703932)
chr1 (1-60)||(47098642-47098699)
chr1 (1-60)||(47102656-47102713)
chr1 (10-53)||(1054874-1054917)
chr1 (10-53)||(25439758-25439801)
chr1 (10-53)||(25444951-25444994)
chr1 (10-53)||(39445679-39445722)
chr1 (10-53)||(44023736-44023779)
chr1 (1-57)||(22819657-22819711)
chr1 (1-60)||(13598623-13598680)
chr1 (17-60)||(16124347-16124388)
chr1 (1-60)||(27104219-27104275)
chr1 (1-60)||(29652036-29652093)
[»] chr5 (37 HSPs)
chr5 (1-209)||(31180292-31180500)
chr5 (1-209)||(24135927-24136133)
chr5 (1-209)||(30631484-30631693)
chr5 (1-209)||(35387741-35387946)
chr5 (1-209)||(38219477-38219682)
chr5 (91-209)||(38192252-38192369)
chr5 (1-209)||(15464611-15464814)
chr5 (17-209)||(36932181-36932368)
chr5 (1-209)||(14520309-14520510)
chr5 (1-209)||(9353149-9353350)
chr5 (107-209)||(1457067-1457169)
chr5 (1-54)||(1457014-1457067)
chr5 (1-54)||(27445150-27445203)
chr5 (1-54)||(27449994-27450047)
chr5 (1-54)||(43592459-43592512)
chr5 (1-54)||(43598904-43598957)
chr5 (1-54)||(43604396-43604449)
chr5 (1-54)||(43609888-43609941)
chr5 (2-205)||(11916790-11916985)
chr5 (107-209)||(27445048-27445150)
chr5 (107-209)||(27449892-27449994)
chr5 (107-209)||(43592357-43592459)
chr5 (107-209)||(43598802-43598904)
chr5 (107-209)||(43604294-43604396)
chr5 (107-209)||(43609786-43609888)
chr5 (1-54)||(15044865-15044919)
chr5 (107-186)||(15044785-15044865)
chr5 (17-178)||(12084010-12084164)
chr5 (1-179)||(17003776-17003949)
chr5 (10-53)||(28807436-28807479)
chr5 (33-186)||(10281852-10282002)
chr5 (1-60)||(24553344-24553401)
chr5 (1-60)||(28832480-28832537)
chr5 (1-59)||(11181649-11181705)
chr5 (112-209)||(28807485-28807580)
chr5 (110-179)||(3880407-3880476)
chr5 (1-60)||(31300412-31300469)
[»] scaffold0188 (2 HSPs)
scaffold0188 (1-209)||(17765-17970)
scaffold0188 (1-209)||(23858-24063)
[»] scaffold0140 (1 HSPs)
scaffold0140 (1-209)||(8234-8437)
[»] scaffold0006 (2 HSPs)
scaffold0006 (2-209)||(133097-133298)
scaffold0006 (1-60)||(5908-5965)
[»] scaffold0087 (2 HSPs)
scaffold0087 (1-209)||(36649-36850)
scaffold0087 (1-209)||(43778-43979)
[»] scaffold0355 (4 HSPs)
scaffold0355 (1-54)||(3701-3754)
scaffold0355 (19-54)||(9514-9549)
scaffold0355 (107-186)||(3754-3833)
scaffold0355 (107-186)||(9549-9628)
[»] scaffold0135 (2 HSPs)
scaffold0135 (1-54)||(34914-34967)
scaffold0135 (107-186)||(34967-35047)
[»] scaffold0036 (1 HSPs)
scaffold0036 (1-209)||(85762-85963)
[»] scaffold0464 (1 HSPs)
scaffold0464 (10-53)||(542-585)


Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 14291775 - 14291567
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtgt 100  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  14291775 gtctttgtagatagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgt 14291676  T
Q  101 cttctcttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaagctattgtttcttgtaac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  14291675 cttctcttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaggctattgtttcttgtaac 14291576  T
Q  201 cctttgtaa 209  Q
    |||||||||    
T  14291575 cctttgtaa 14291567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 11098737 - 11098945
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtgt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||    
T  11098737 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagtacattagttggaaggatctaaagcttcctctagtgt 11098836  T
Q  101 cttctcttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaagctattgtttcttgtaac 200  Q
    ||||||||||||||||||||||||||||||||||||||||  | ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  11098837 cttctcttttagggttcatattgtgagagtggggaaacaccaaagggtagaatctagggtttgttcttgtgtaagcttgcaagctattgtttcttgtaac 11098936  T
Q  201 cctttgtaa 209  Q
    |||||||||    
T  11098937 cctttgtaa 11098945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 9296212 - 9296419
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtgt 100  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||  | |||||||||| ||||||||||||||||||    
T  9296212 gtctttgtagaaagtgtctattgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcacca-ttggaaggatctaaagcttcctctagtgt 9296310  T
Q  101 cttctcttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaagctattgtttcttgtaac 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  9296311 cttctcttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtataagcttgaaggctattgtttcttgtaac 9296410  T
Q  201 cctttgtaa 209  Q
    |||||||||    
T  9296411 cctttgtaa 9296419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 3492034 - 3491829
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtgt 100  Q
    |||||||||| |||  ||||||||||||| ||||||||||||| |||||||||||||||| | | ||  | |||||||||| | ||||||||||| ||||    
T  3492034 gtctttgtagtgaggatctcttgggttggaaaaaacattgtaaacaccttgggtagtgag-attccacca-ttggaaggatcttaagcttcctcttgtgt 3491937  T
Q  101 cttctcttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaagctattgtttcttgtaac 200  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||    
T  3491936 cttctcttttagggttcatattgtgagagtggggaaacacaaatgggtagaatctaggtcttgttcttgtgtaagcttgcaagctatt-tttcttgtaac 3491838  T
Q  201 cctttgtaa 209  Q
    |||||||||    
T  3491837 cctttgtaa 3491829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 71 - 209
Target Start/End: Complemental strand, 25398711 - 25398574
Alignment:
Q  71 gttggaaggatttaaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgt 170  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||| |||||||||||    
T  25398711 gttggaaggatctaaagcttcctcttgtgtcttctcttttagggttcatattgtgagagtggagaaacacaaatgggtagaaactaggacttgttcttgt 25398612  T
Q  171 gtaagcttgaaagctattgtttcttgtaaccctttgtaa 209  Q
    ||||||||| |||||||| ||||||||||||||||||||    
T  25398611 gtaagcttgcaagctatt-tttcttgtaaccctttgtaa 25398574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 71 - 209
Target Start/End: Complemental strand, 25403849 - 25403712
Alignment:
Q  71 gttggaaggatttaaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgt 170  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||| |||||||||||    
T  25403849 gttggaaggatctaaagcttcctcttgtgtcttctcttttagggttcatattgtgagagtggagaaacacaaatgggtagaaactaggacttgttcttgt 25403750  T
Q  171 gtaagcttgaaagctattgtttcttgtaaccctttgtaa 209  Q
    ||||||||| |||||||| ||||||||||||||||||||    
T  25403749 gtaagcttgcaagctatt-tttcttgtaaccctttgtaa 25403712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 71 - 209
Target Start/End: Complemental strand, 25407838 - 25407701
Alignment:
Q  71 gttggaaggatttaaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgt 170  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||| |||||||||||    
T  25407838 gttggaaggatctaaagcttcctcttgtgtcttctcttttagggttcatattgtgagagtggagaaacacaaatgggtagaaactaggacttgttcttgt 25407739  T
Q  171 gtaagcttgaaagctattgtttcttgtaaccctttgtaa 209  Q
    ||||||||| |||||||| ||||||||||||||||||||    
T  25407738 gtaagcttgcaagctatt-tttcttgtaaccctttgtaa 25407701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 40739114 - 40738915
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtgt 100  Q
    |||||||||| |||  |||||||||||||||||  |||||||| ||||||||||| |||| | ||||  | ||||||||||  ||||||| || | ||||    
T  40739114 gtctttgtagtgaggatctcttgggttgggaaa--cattgtaaacaccttgggtaatgag-atttcacca-ttggaaggatcaaaagcttactattgtgt 40739019  T
Q  101 cttctcttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaagctattgtttcttgtaac 200  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| | |||||||||||||||||||| |||||||| |||||||||||    
T  40739018 cttctcttttagggttcatattgtgagagtggggaaacacaaatgggtagaaactaagacttgttcttgtgtaagcttgcaagctatt-tttcttgtaac 40738920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 36757579 - 36757758
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtgt 100  Q
    |||||||||| |||  |||||||||||||||||  |||||||| |||||||||||||||| | ||||  | ||||||||||  |||||||||| | ||||    
T  36757579 gtctttgtagtgaggatctcttgggttgggaaa--cattgtaaacaccttgggtagtgag-atttcacca-ttggaaggatcaaaagcttccttttgtgt 36757674  T
Q  101 cttctcttttagggttcat-attgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaagct 185  Q
    ||||||||| ||||||||| |||| ||||||||| || |||| ||||||||||  ||||  |||||||||||||||||||||||||    
T  36757675 cttctcttt-agggttcatcattgagagagtgggtaa-cacaaatgggtagaaattaggttttgttcttgtgtaagcttgaaagct 36757758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 209
Target Start/End: Original strand, 28259010 - 28259195
Alignment:
Q  17 tctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtgtcttctcttttagggtt 116  Q
    |||||||||||||||||  |||||||| || ||||||||||||| | ||||  | ||||||||||  |||||||||| | ||||||||||||| |||| |    
T  28259010 tctcttgggttgggaaa--cattgtaaacatcttgggtagtgag-atttcacca-ttggaaggatcaaaagcttccttttgtgtcttctcttt-aggggt 28259104  T
Q  117 cat-attgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaagctattgtttcttgtaaccctttgtaa 209  Q
    ||| |||| ||||||||| ||||||| ||||||||||  |||  |||||||||||||||||||| |||||||  ||||||||||| ||||||||    
T  28259105 cattattgagagagtggg-aaacacaaatgggtagaaattagatcttgttcttgtgtaagcttgcaagctat--tttcttgtaactctttgtaa 28259195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 17 - 205
Target Start/End: Original strand, 23078304 - 23078484
Alignment:
Q  17 tctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtgtcttctcttttagggtt 116  Q
    |||||||||||||||||  |||||||| |||||||||||||||| | ||||| | ||||||||||  |||||||||| | ||||||||||||  ||||||    
T  23078304 tctcttgggttgggaaa--cattgtaaacaccttgggtagtgag-atttcatca-ttggaaggatcaaaagcttccttttgtgtcttctctt--agggtt 23078397  T
Q  117 catattgtgagagtg-gggaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaagctattgtttcttgtaacccttt 205  Q
    |||  | |||||||| ||| |||||| ||||||||||  || | |||||||||||||||||||| |||||||  ||||||||||| ||||    
T  23078398 catcat-tgagagtgtgggtaacacaaatgggtagaaattaagtcttgttcttgtgtaagcttgcaagctat--tttcttgtaactcttt 23078484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 25409913 - 25409854
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgag 60  Q
    ||||||||||||||  ||||||||||||||||||||||||||| ||||||||||||||||    
T  25409913 gtctttgtagagaggatctcttgggttgggaaaaacattgtaaacaccttgggtagtgag 25409854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 34389131 - 34388960
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggat-ttaaagcttcctctagtg 99  Q
    |||||||||| |||  |||||||||||||||||  |||||||| ||||||||||||||| || ||||  | ||||||||||   |||||||||| | |||    
T  34389131 gtctttgtagtgaggatctcttgggttgggaaa--cattgtaaacaccttgggtagtga-gatttcacca-ttggaaggatcaaaaagcttccttttgtg 34389036  T
Q  100 tcttctcttttagggttcatattgtgagagtggg-gaaacacatatgggtagaatctagggcttgttcttgtgtaagct 177  Q
    | |||||  ||||| ||||||||||||||||||| || ||| | ||||||||||  |||| ||||||||||||||||||    
T  34389035 ttttctc--ttaggattcatattgtgagagtgggtgacaca-aaatgggtagaaattaggtcttgttcttgtgtaagct 34388960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 39811841 - 39811894
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggt 54  Q
    |||||||| ||||||||||||| ||||| |||||||||||||||||||||||||    
T  39811841 gtctttgttgagagtgtctcttaggttgagaaaaacattgtaatcaccttgggt 39811894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 84 - 186
Target Start/End: Original strand, 10707149 - 10707248
Alignment:
Q  84 aaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaag 183  Q
    |||||||||| | |||| |||||||  ||| |||||||||||||||||||  | |||| ||||||||||  |||| |||||||||||||||||||| |||    
T  10707149 aaagcttccttttgtgttttctctt--aggattcatattgtgagagtgggtga-cacagatgggtagaaattaggtcttgttcttgtgtaagcttgtaag 10707245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 84 - 186
Target Start/End: Original strand, 8390046 - 8390146
Alignment:
Q  84 aaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggg-gaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaa 182  Q
    |||||||||||| |||| |||||||  ||| ||||||||||||||||||| || ||| | ||||||||||  |||| |||||||||||| ||||||| ||    
T  8390046 aaagcttcctcttgtgttttctctt--aggattcatattgtgagagtgggtgacacaaa-atgggtagaaattaggtcttgttcttgtgcaagcttgtaa 8390142  T
Q  183 gcta 186  Q
    ||||    
T  8390143 gcta 8390146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 107 - 186
Target Start/End: Original strand, 39811894 - 39811974
Alignment:
Q  107 ttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgt-aagcttgaaagcta 186  Q
    |||||||||||||| |||||||||||| ||| ||  | ||||||||||||||| |||||| ||||| ||||||||| ||||    
T  39811894 ttttagggttcatagtgtgagagtgggaaaataccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaggcta 39811974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 186
Target Start/End: Complemental strand, 8040314 - 8040163
Alignment:
Q  33 aaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaa-gcttcctctagtgtcttctcttttagggttcatattgtgagagtg 131  Q
    ||||||||||| |||||||||||||||| | ||||  | ||||||||||  ||| ||||||| |  ||| || ||| ||||| |||||||||||||||||    
T  8040314 aaacattgtaaacaccttgggtagtgag-atttcacca-ttggaaggatcaaaaagcttccttttatgtttt-tctcttaggattcatattgtgagagtg 8040218  T
Q  132 gg-gaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaagcta 186  Q
    || || ||| | ||||||||||  |||| |||||||||||||||||||| ||||||    
T  8040217 ggtgacacaaa-atgggtagaaattaggtcttgttcttgtgtaagcttgtaagcta 8040163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 186
Target Start/End: Complemental strand, 32246966 - 32246887
Alignment:
Q  108 tttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgt-aagcttgaaagcta 186  Q
    ||||||||||||| |||||||||||| ||| ||  | ||||| ||||||||| |||||| ||||| ||||||||||||||    
T  32246966 tttagggttcatagtgtgagagtgggaaaataccaaagggtataatctagggtttgttcatgtgtaaagcttgaaagcta 32246887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 32247011 - 32246968
Alignment:
Q  10 gagagtgtctcttgggttgggaaaaacattgtaatcaccttggg 53  Q
    |||||||| |||| ||||||||||||||||||||||||||||||    
T  32247011 gagagtgtttcttaggttgggaaaaacattgtaatcaccttggg 32246968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 209
Target Start/End: Original strand, 42039588 - 42039687
Alignment:
Q  109 ttagggttcatattgtgagagtggg-gaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaagctattgtttcttgtaaccctttgt 207  Q
    ||||| ||||||||||||||||||| || ||| | ||||||||||  |||| |||||| ||||||||||||| |||||| | ||||||||||| ||| ||    
T  42039588 ttaggattcatattgtgagagtgggtgacacaaa-atgggtagaaattaggtcttgtttttgtgtaagcttgcaagctaat-tttcttgtaactcttcgt 42039685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 21630225 - 21630168
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgag 60  Q
    |||||||||| |||  |||||||||||||||||  |||||||| ||||||||||||||||    
T  21630225 gtctttgtagtgaggatctcttgggttgggaaa--cattgtaaacaccttgggtagtgag 21630168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 10445284 - 10445341
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgag 60  Q
    |||||||||| |||  ||||| |||||||||||  |||||||| ||||||||||||||||    
T  10445284 gtctttgtagtgaggttctctcgggttgggaaa--cattgtaaacaccttgggtagtgag 10445341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 14698826 - 14698883
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgag 60  Q
    |||||||||| |||  ||||| |||||||||||  |||||||| ||||||||||||||||    
T  14698826 gtctttgtagtgaggatctctcgggttgggaaa--cattgtaaacaccttgggtagtgag 14698883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 17865469 - 17865428
Alignment:
Q  17 tctcttgggttgggaaaaacattgtaatcaccttgggtagtgag 60  Q
    |||||||||||||||||  |||||||| ||||||||||||||||    
T  17865469 tctcttgggttgggaaa--cattgtaaacaccttgggtagtgag 17865428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 20522502 - 20522445
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgag 60  Q
    |||||||||| |||| ||||||||||||||  || |||||||| || |||||||||||||    
T  20522502 gtctttgtagtgagtatctcttgggttggg--aagcattgtaaacaacttgggtagtgag 20522445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 33118415 - 33118358
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgag 60  Q
    |||||||||| |||  |||||||||||||| ||  |||||||| ||||||||||||||||    
T  33118415 gtctttgtagtgaggatctcttgggttggggaa--cattgtaaacaccttgggtagtgag 33118358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 33528441 - 33528498
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgag 60  Q
    |||||||||| |||  ||||||||||||||  ||||||||||| ||| ||||||||||||    
T  33528441 gtctttgtagtgaggatctcttgggttggg--aaacattgtaaacacattgggtagtgag 33528498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 2671396 - 2671604
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  2671396 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgt 2671495  T
Q  101 cttctcttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaagctattgtttcttgtaac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||||||    
T  2671496 cttctcttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttggtcttgtgtaagcttgcaatctattgtttcttgtaac 2671595  T
Q  201 cctttgtaa 209  Q
    |||||||||    
T  2671596 cctttgtaa 2671604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 40372606 - 40372813
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  40372606 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgt 40372705  T
Q  101 cttctcttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaagctattgtttcttgtaac 200  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  40372706 cttctcttttagggttcatattatgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgcaagctatt-tttcttgtaac 40372804  T
Q  201 cctttgtaa 209  Q
    |||||||||    
T  40372805 cctttgtaa 40372813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 8738873 - 8739081
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtgt 100  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  8738873 gtctttgtagagagtatctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttgaaaggatctaaagcttcctctagtgt 8738972  T
Q  101 cttctcttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaagctattgtttcttgtaac 200  Q
    |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  8738973 cttctcttctagggttcatattgtgagagtggggaaatacatatgggtagaatctagggattgttcttgtgtaagcttgaaggctattgtttcttgtaac 8739072  T
Q  201 cctttgtaa 209  Q
    |||||||||    
T  8739073 cctttgtaa 8739081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 9091111 - 9091319
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtgt 100  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  9091111 gtctttgtagagagtatctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttgaaaggatctaaagcttcctctagtgt 9091210  T
Q  101 cttctcttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaagctattgtttcttgtaac 200  Q
    |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  9091211 cttctcttctagggttcatattgtgagagtggggaaatacatatgggtagaatctagggattgttcttgtgtaagcttgaaggctattgtttcttgtaac 9091310  T
Q  201 cctttgtaa 209  Q
    |||||||||    
T  9091311 cctttgtaa 9091319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 7167532 - 7167323
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaa-cattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtg 99  Q
    |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  7167532 gtctttgttgagagtgtctcttgggttgggaaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtg 7167433  T
Q  100 tcttctcttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaagctattgtttcttgtaa 199  Q
    |||||||||||||||||||||||||||||||||||||| ||  | ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  7167432 tcttctcttttagggttcatattgtgagagtggggaaataccaaagggtagaatctagggtttgttcttgtgtaagcttgaaggctattgtttcttgtaa 7167333  T
Q  200 ccctttgtaa 209  Q
    ||||||||||    
T  7167332 ccctttgtaa 7167323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 8477651 - 8477441
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  8477651 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgt 8477552  T
Q  101 cttctcttttagggttcatattgtgagagt-ggggaaacacatatgggtagaatctagggcttg-ttcttgtgtaagcttgaaagctattgtttcttgta 198  Q
    |||||||||||||||||||||||||||||| ||||||||||  | |||||||||||||| |||| || ||||||||||||| ||||||||||||||||||    
T  8477551 cttctcttttagggttcatattgtgagagtgggggaaacaccaaagggtagaatctaggtcttgtttattgtgtaagcttgcaagctattgtttcttgta 8477452  T
Q  199 accctttgtaa 209  Q
    |||||||||||    
T  8477451 accctttgtaa 8477441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 28501507 - 28501716
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtgt 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||     
T  28501507 gtctttgttgagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtga 28501606  T
Q  101 cttctcttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgt-aagcttgaaagctattgtttcttgtaa 199  Q
    ||||||||||||||||||||||||||||||||||||||||  | ||||||||||||||| || ||||||||| ||||||||| ||||  |||||||||||    
T  28501607 cttctcttttagggttcatattgtgagagtggggaaacaccaaagggtagaatctagggtttattcttgtgtaaagcttgaaggctagagtttcttgtaa 28501706  T
Q  200 ccctttgtaa 209  Q
    || |||||||    
T  28501707 ccttttgtaa 28501716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 28503674 - 28503883
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtgt 100  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||     
T  28503674 gtctttgttgagagtgtctcttgggttgggaaaaatattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtga 28503773  T
Q  101 cttctcttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgt-aagcttgaaagctattgtttcttgtaa 199  Q
    ||||||||||||||||||||||||||||||||||||||||  | ||||||||||||||| || ||||||||| ||||||||| ||||  |||||||||||    
T  28503774 cttctcttttagggttcatattgtgagagtggggaaacaccaaagggtagaatctagggtttattcttgtgtaaagcttgaaggctagagtttcttgtaa 28503873  T
Q  200 ccctttgtaa 209  Q
    || |||||||    
T  28503874 ccttttgtaa 28503883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 26928405 - 26928609
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtgt 100  Q
    |||||||||| |||  |||||||||||||||||  |||||||| ||||||||||| |||| | ||||  | ||||||||||  |||||||||||| ||||    
T  26928405 gtctttgtagtgaggatctcttgggttgggaaa--cattgtaaacaccttgggtaatgag-atttcacca-ttggaaggatcaaaagcttcctcttgtgt 26928500  T
Q  101 cttctcttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaagctattgtttcttgtaac 200  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||    
T  26928501 cttctcttttagggttcatattgtgagagtggggaaacacaaatgggtagaatctaggtcttgttcttgtgtaagcttgcaagctattttttcttgtaac 26928600  T
Q  201 cctttgtaa 209  Q
    |||||||||    
T  26928601 cctttgtaa 26928609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 1306232 - 1306027
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtgt 100  Q
    |||||||||| |||  ||||||||||||||||||||||||||| |||||||||||||||| | ||||  | |||||||||| | ||||||||||| ||||    
T  1306232 gtctttgtagtgaggatctcttgggttgggaaaaacattgtaaacaccttgggtagtgag-atttcacca-ttggaaggatcttaagcttcctcttgtgt 1306135  T
Q  101 cttctcttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaagctattgtttcttgtaac 200  Q
    ||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||| | |||||||||||||||||||| || ||||| |||||||||||    
T  1306134 cttctcttttagggttcatattgagagagtggggaaacacaaatgggtagaaactatgacttgttcttgtgtaagcttgcaaactatt-tttcttgtaac 1306036  T
Q  201 cctttgtaa 209  Q
    |||||||||    
T  1306035 cctttgtaa 1306027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 17 - 209
Target Start/End: Complemental strand, 32143587 - 32143400
Alignment:
Q  17 tctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtgtcttctcttttagggtt 116  Q
    |||||||||||||  |||||||||||| |||||||||||||||| | ||||  | ||||||||||  |||||||||||| ||||||||||||||||||||    
T  32143587 tctcttgggttgg--aaaacattgtaaacaccttgggtagtgag-atttcacca-ttggaaggatcaaaagcttcctcttgtgtcttctcttttagggtt 32143492  T
Q  117 catattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaagctattgtttcttgtaaccctttgtaa 209  Q
    ||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  32143491 catattgagagagtggggaaacacaaatgggtagaatctaggtcttgttcttgtgtaagcttgcaagctatt-tttcttgtaaccctttgtaa 32143400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 17 - 209
Target Start/End: Complemental strand, 27453224 - 27453037
Alignment:
Q  17 tctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtgtcttctcttttagggtt 116  Q
    ||||||||||||| |||  |||||||| |||||||||||||||| | ||||  | ||||||||||  |||||||||| | ||||||||||||||||||||    
T  27453224 tctcttgggttggcaaa--cattgtaaacaccttgggtagtgag-atttcacca-ttggaaggatcaaaagcttccttttgtgtcttctcttttagggtt 27453129  T
Q  117 catattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaagctattgtttcttgtaaccctttgtaa 209  Q
    ||||||| ||||||||||||||||| ||||||||||  ||||  ||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  27453128 catattgagagagtggggaaacacaaatgggtagaaaataggaattgttcttgtgtaagcttgcaagctatt-tttcttgtaaccctttgtaa 27453037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 27986262 - 27986460
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtgt 100  Q
    |||||||||| |||  |||||||||||||||||  |||||||| |||||||||||||||| | ||||  | ||||||||||  |||||||||| | ||||    
T  27986262 gtctttgtagtgaggatctcttgggttgggaaa--cattgtaaacaccttgggtagtgag-atttcacca-ttggaaggatcaaaagcttccttttgtgt 27986357  T
Q  101 cttctcttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaagctattgtttcttgtaac 200  Q
    |||||||||||||||| |||||| |||||| |||||||||| ||||||||||  |||| |||||||||||||||||||| ||||| || |||||||||||    
T  27986358 cttctcttttagggttgatattgagagagt-gggaaacacaaatgggtagaaattaggtcttgttcttgtgtaagcttgcaagct-ttttttcttgtaac 27986455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 33386481 - 33386680
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtgt 100  Q
    |||||||||| |||  |||||||||||| ||||  |||||||| |||||||||||||||| | ||||  | ||||||||||  |||||||||| | ||||    
T  33386481 gtctttgtagtgaggatctcttgggttgagaaa--cattgtaaacaccttgggtagtgag-atttcacca-ttggaaggatcaaaagcttccttttgtgt 33386576  T
Q  101 cttctcttttagggttcat-attgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaagctattgtttcttgtaa 199  Q
    ||||||||||||||||||| |||| ||||||||| ||||||| ||||||||||  |||| |||||||||||||||||||| || ||||| ||||||||||    
T  33386577 cttctcttttagggttcattattgagagagtggg-aaacacaaatgggtagaaattaggacttgttcttgtgtaagcttgcaaactatt-tttcttgtaa 33386674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 27974758 - 27974960
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtgt 100  Q
    |||||||||| |||  |||||||||| ||||||  |||||||| |||||||||||||||| | ||||  | ||||||||||  |||||||||| | ||||    
T  27974758 gtctttgtagtgaggatctcttgggtcgggaaa--cattgtaaacaccttgggtagtgag-atttcacca-ttggaaggatcaaaagcttccttttgtgt 27974853  T
Q  101 cttctcttttagggttcat-attgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaagctattgtttcttgtaa 199  Q
    ||||||||| ||||||||| |||| |||| |||| ||||||| ||||||||||  |||| |||||||||||||||||||| |||||||| ||||||||||    
T  27974854 cttctcttt-agggttcattattgagagaatggg-aaacacaaatgggtagaaattaggtcttgttcttgtgtaagcttgcaagctatt-tttcttgtaa 27974950  T
Q  200 ccctttgtaa 209  Q
    | ||||||||    
T  27974951 ctctttgtaa 27974960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 17 - 209
Target Start/End: Complemental strand, 16264613 - 16264429
Alignment:
Q  17 tctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtgtcttctcttttagggtt 116  Q
    |||||||||||||||||  |||||||| |||||||||||||||| | ||||  | ||||||||||  |||||||||| | ||||||||||||  ||||||    
T  16264613 tctcttgggttgggaaa--cattgtaaacaccttgggtagtgag-atttcacca-ttggaaggatcaaaagcttccttttgtgtcttctctt--agggtt 16264520  T
Q  117 cat-attgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaagctattgtttcttgtaaccctttgtaa 209  Q
    ||| |||| ||||||||| || |||| ||| ||||||  |||| |||||||||||| ||||||| |||||||  ||||||||||| ||||||||    
T  16264519 catcattgagagagtgggtaa-cacaaatgtgtagaaattaggtcttgttcttgtggaagcttgcaagctat--tttcttgtaactctttgtaa 16264429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 209
Target Start/End: Original strand, 6794537 - 6794721
Alignment:
Q  17 tctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtgtcttctcttttagggtt 116  Q
    ||||||| |||||||||  |||||||| |||||||||||||||| | ||||  | |||||| ||   |||||||||| | || | |||||||  ||||||    
T  6794537 tctcttgagttgggaaa--cattgtaaacaccttgggtagtgag-atttcacca-ttggaatgaacaaaagcttccttttgtattttctctt--agggtt 6794630  T
Q  117 catattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaagctattgtttcttgtaaccctttgtaa 209  Q
    |||||||||||||||||  | |||| ||||||||||  |||| |||||||||||||||||||| |||||| | ||||||||||| ||||||||    
T  6794631 catattgtgagagtgggtga-cacaaatgggtagaaattaggacttgttcttgtgtaagcttgcaagctaat-tttcttgtaactctttgtaa 6794721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 22173047 - 22173100
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggt 54  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  22173047 gtctttgttgagagtgtctcttgggttgggaaaaacattgtaatcaccttgggt 22173100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 8370295 - 8370494
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtgt 100  Q
    |||||||||| |||  |||||||||||||||||  |||||||| || ||||||||||||| | ||||  | ||||||||||  |||| ||||| | ||||    
T  8370295 gtctttgtagtgaggatctcttgggttgggaaa--cattgtaaacatcttgggtagtgag-atttcacca-ttggaaggatcaaaagtttccttttgtgt 8370390  T
Q  101 cttctcttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaagctattgtttcttgtaac 200  Q
     |||||||  ||| |||||||||||||||||||  | |||| ||||||||||  || | |||||||||||||||||||  ||||||   |||||||||||    
T  8370391 tttctctt--aggattcatattgtgagagtgggtga-cacaaatgggtagaaattatgtcttgttcttgtgtaagcttttaagcta--atttcttgtaac 8370485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 36029373 - 36029194
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtgt 100  Q
    |||||||||| |||  |||||||||||||||||  |||||||| ||||||||||||||| || ||||  | ||||||||||  |||||||||| | ||||    
T  36029373 gtctttgtagtgaggatctcttgggttgggaaa--cattgtaaacaccttgggtagtga-gatttcacca-ttggaaggatcaaaagcttccttttgtgt 36029278  T
Q  101 cttctcttttagggttcatattgtgagagtg-gggaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaagcta 186  Q
     |||||  ||||| |||||||| |||||||| | || ||| | ||||||||||  |||| |||||||||||||||| ||| ||||||    
T  36029277 tttctc--ttaggattcatattttgagagtgagtgacaca-aaatgggtagaaattaggtcttgttcttgtgtaagtttgtaagcta 36029194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 107 - 209
Target Start/End: Original strand, 22173100 - 22173202
Alignment:
Q  107 ttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgt-aagcttgaaagctattgtttcttgtaacccttt 205  Q
    ||||||||||||||||  ||||||||||||||||  | ||||||||||||||| |||||| ||||| ||||||||| ||||  | ||||||||||| |||    
T  22173100 ttttagggttcatattaggagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag-ttcttgtaacctttt 22173198  T
Q  206 gtaa 209  Q
    ||||    
T  22173199 gtaa 22173202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 35925758 - 35925588
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtgt 100  Q
    |||||||||| |||  ||| |||||||||||||  |||||||| |||||||||||||||| | ||||  | ||||||||||  |||||||||| | ||||    
T  35925758 gtctttgtagtgaggatcttttgggttgggaaa--cattgtaaacaccttgggtagtgag-atttcacca-ttggaaggatcaaaagcttccttttgtgt 35925663  T
Q  101 cttctcttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgtaagctt 178  Q
     |||||||  ||| |||||||||||||||| |||  ||||| ||||||||||  ||||  ||||||| ||||||||||    
T  35925662 tttctctt--aggattcatattgtgagagt-gggtgacacaaatgggtagaaattaggttttgttctagtgtaagctt 35925588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 40592588 - 40592768
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggat-ttaaagcttcctctagtg 99  Q
    |||||||||| |||  |||||||||||||||||  |||||||| ||||||||||||||| || ||||  | ||||||||||   |||||||||| | |||    
T  40592588 gtctttgtagtgaggatctcttgggttgggaaa--cattgtaaacaccttgggtagtga-gatttcacca-ttggaaggatcaaaaagcttccttttgtg 40592683  T
Q  100 tcttctcttttagggttcatattgtgagagtggg-gaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaagcta 186  Q
    | |||||  ||||| ||||||||||||||||||| || ||| | ||||||||||  |||   ||||||||||||||||||| ||||||    
T  40592684 ttttctc--ttaggattcatattgtgagagtgggtgacaca-aaatgggtagaaattagattttgttcttgtgtaagcttgtaagcta 40592768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 21711502 - 21711302
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtgt 100  Q
    |||||||||| |||  |||||||||||||||||  |||||||| ||||||| |||||||| | ||||  | ||||||||||  |||||||||| | ||||    
T  21711502 gtctttgtagtgaggatctcttgggttgggaaa--cattgtaaacaccttgagtagtgag-atttcacca-ttggaaggatcaaaagcttccttttgtgt 21711407  T
Q  101 cttctcttttagggttcatattgtgagagtg-gggaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaagctattgtttcttgtaa 199  Q
     |||||||  ||| |||||  | |||||||| ||| |||||| ||||||||||  |||| |||| ||||||||||||||  ||||||   ||||||||||    
T  21711406 tttctctt--aggattcattat-tgagagtgtgggtaacacaaatgggtagaaattaggtcttgctcttgtgtaagcttttaagcta--atttcttgtaa 21711312  T
Q  200 ccctttgtaa 209  Q
    | ||||||||    
T  21711311 ctctttgtaa 21711302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 18656657 - 18656614
Alignment:
Q  10 gagagtgtctcttgggttgggaaaaacattgtaatcaccttggg 53  Q
    |||||||| |||| ||||||||||||||||||||||||||||||    
T  18656657 gagagtgtttcttaggttgggaaaaacattgtaatcaccttggg 18656614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 3328163 - 3328220
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgag 60  Q
    |||||||||| |||  |||||||||||||  |||||||||||| ||||||||||||||||    
T  3328163 gtctttgtagtgagcttctcttgggttgg--aaaacattgtaaacaccttgggtagtgag 3328220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 4386783 - 4386840
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgag 60  Q
    |||||||||| |||  |||||||||||||||||  |||||||||||||||| ||||||||    
T  4386783 gtctttgtagtgaggttctcttgggttgggaaa--cattgtaatcaccttgagtagtgag 4386840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 26299268 - 26299211
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgag 60  Q
    |||||||||| |||  |||||||||||||||||  |||||||| ||||||||||||||||    
T  26299268 gtctttgtagtgaggatctcttgggttgggaaa--cattgtaaacaccttgggtagtgag 26299211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 47923710 - 47923767
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgag 60  Q
    |||||||||| |||  |||||||||||||||||  |||||||| ||||||||||||||||    
T  47923710 gtctttgtagtgagaatctcttgggttgggaaa--cattgtaaacaccttgggtagtgag 47923767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 10274646 - 10274605
Alignment:
Q  19 tcttgggttgggaaaaacattgtaatcaccttgggtagtgag 60  Q
    ||||||||||||||| ||||| || |||||||||||||||||    
T  10274646 tcttgggttgggaaacacattatattcaccttgggtagtgag 10274605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 1736110 - 1736167
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgag 60  Q
    |||||||||| |||  ||| |||||||||||||  |||||||| ||||||||||||||||    
T  1736110 gtctttgtagtgaggatctattgggttgggaaa--cattgtaaacaccttgggtagtgag 1736167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 3323513 - 3323554
Alignment:
Q  17 tctcttgggttgggaaaaacattgtaatcaccttgggtagtgag 60  Q
    |||||||||||||||||  |||||||| ||||||||||||||||    
T  3323513 tctcttgggttgggaaa--cattgtaaacaccttgggtagtgag 3323554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 8126910 - 8126853
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgag 60  Q
    |||||||||| |||  | |||||||||||||||  |||||||| ||||||||||||||||    
T  8126910 gtctttgtagtgaggttttcttgggttgggaaa--cattgtaaacaccttgggtagtgag 8126853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 24694972 - 24695029
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgag 60  Q
    |||||||||| |||  ||||||||||||||  ||||||||||| |||||||||| |||||    
T  24694972 gtctttgtagtgaggatctcttgggttggg--aaacattgtaaacaccttgggtggtgag 24695029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 4759884 - 4760093
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaa-acattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtg 99  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  4759884 gtctttgtagagagagtctcttgggttgggaaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtg 4759983  T
Q  100 tcttctcttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaagctattgtttcttgtaa 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  4759984 tcttctcttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaggctattgtttcttgtaa 4760083  T
Q  200 ccctttgtaa 209  Q
    ||||||||||    
T  4760084 ccctttgtaa 4760093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 33037618 - 33037825
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtgt 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  33037618 gtcttcgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgt 33037717  T
Q  101 cttctcttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaagctattgtttcttgtaac 200  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  33037718 cttctc-tttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggtttgttcttgtgtaagcttgaaggctattgtttcttgtaac 33037816  T
Q  201 cctttgtaa 209  Q
    |||||||||    
T  33037817 cctttgtaa 33037825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 30655933 - 30655725
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtgt 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  30655933 gtctttgttgagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgt 30655834  T
Q  101 cttctcttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaagctattgtttcttgtaac 200  Q
    ||||||||||||||||||||||||||||||||||||||||  | ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  30655833 cttctcttttagggttcatattgtgagagtggggaaacaccaaagggtagaatctagggtttgttcttgtgtaagcttgaaggctattgtttcttgtaac 30655734  T
Q  201 cctttgtaa 209  Q
    |||||||||    
T  30655733 cctttgtaa 30655725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 10688950 - 10689161
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagtt--ggaaggatttaaagcttcctctagt 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || ||||| ||||||||||||||||    
T  10688950 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttgggggaggatctaaagcttcctctagt 10689049  T
Q  99 gtcttctcttttagggttcatattgtgagagtggggaaac-acatatgggtagaatctagggcttgttcttgtgtaagcttgaaagctattgtttcttgt 197  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  10689050 gtcttctcttttagggttcatattgtgagagtggggaaacaacatatgggtagaatctagggcttgttcttgtgtaagcttgaaggctattgtttcttgt 10689149  T
Q  198 aaccctttgtaa 209  Q
    |||||| |||||    
T  10689150 aaccctctgtaa 10689161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 18870371 - 18870575
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtgt 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  18870371 gtctttgttgagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgt 18870470  T
Q  101 cttctcttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaagctattgtttcttgtaac 200  Q
    ||||||||||||||||||||||||||||||||||||| ||  | ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  18870471 cttctcttttagggttcatattgtgagagtggggaaataccaaagggtagaatctagggtttgttcttgtgtaagcttgaatgctattgtttcttgtaac 18870570  T
Q  201 ccttt 205  Q
    |||||    
T  18870571 ccttt 18870575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 36979663 - 36979456
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtgt 100  Q
    |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  36979663 gtctttgtagagagtgtctcttaggttgggaaaa-cattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgt 36979565  T
Q  101 cttctcttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaagctattgtttcttgtaac 200  Q
    ||||||||||||||||||||||||||||||||||||||||  | ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  36979564 cttctcttttagggttcatattgtgagagtggggaaacaccaaagggtagaatctagggtttgttcttgtgtaagcttgaaggctattgtttcttgtaac 36979465  T
Q  201 cctttgtaa 209  Q
    |||||||||    
T  36979464 cctttgtaa 36979456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 18852977 - 18853181
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtgt 100  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  18852977 gtctttgttgagagtgtctcttgggttgggaaaaatattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgt 18853076  T
Q  101 cttctcttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaagctattgtttcttgtaac 200  Q
    ||||||||||||||||||||||||||||||||||||| ||  | ||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  18853077 cttctcttttagggttcatattgtgagagtggggaaataccaaagggtaaaatctagggtttgttcttgtgtaagcttgaatgctattgtttcttgtaac 18853176  T
Q  201 ccttt 205  Q
    |||||    
T  18853177 ccttt 18853181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 1261767 - 1261972
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtgt 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||  | |||||||||| ||||||||||||||||||    
T  1261767 gtctttgtagagagggtctcttgggttgggaaaaacattgtaatcaccttgggtagtgag-atttcacca-ttggaaggatctaaagcttcctctagtgt 1261864  T
Q  101 cttctcttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaagctattgtttcttgtaac 200  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||||| |||||||| |||||||||||    
T  1261865 cttctcttttagggttcatattgtgagagtggggaaacacaaatgggtagaatctaggtcttgtacttgtgtaagcttgcaagctatt-tttcttgtaac 1261963  T
Q  201 cctttgtaa 209  Q
    |||||||||    
T  1261964 cctttgtaa 1261972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 6311585 - 6311375
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtgt 100  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||     
T  6311585 gtctttgttgagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatcaaaagcttcctctagtga 6311486  T
Q  101 cttctc--ttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgt-aagcttgaaagctattgtttcttgt 197  Q
    ||||||  ||||||||||||| ||||||||||||||||||||  | ||||||||||||||| ||| |||||||| ||||||||| ||||  |||||||||    
T  6311485 cttctcttttttagggttcatcttgtgagagtggggaaacaccaaagggtagaatctagggtttg-tcttgtgtaaagcttgaaggctagagtttcttgt 6311387  T
Q  198 aaccctttgtaa 209  Q
    |||| |||||||    
T  6311386 aaccttttgtaa 6311375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 31071042 - 31071247
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtgt 100  Q
    |||||||||| |||  ||||||||||||||||||||||||||| |||||||||||||||| | ||||  | |||||||||| | ||||||||||| ||||    
T  31071042 gtctttgtagtgaggatctcttgggttgggaaaaacattgtaaacaccttgggtagtgag-atttcacca-ttggaaggatcttaagcttcctcttgtgt 31071139  T
Q  101 cttctcttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaagctattgtttcttgtaac 200  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||| |||||||| |||||||||||    
T  31071140 cttctcttttagggttcatattgtgagagtggggaaacacaaatgggtagaaactaggacttgttcttgtgtaagcttgcaagctatt-tttcttgtaac 31071238  T
Q  201 cctttgtaa 209  Q
    |||||||||    
T  31071239 cctttgtaa 31071247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 26288174 - 26287974
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtgt 100  Q
    ||||||||||||||  ||||||| ||||||||||||||||||| |||||||||||||||| | ||||  | |||||||||| ||||||||||||| ||||    
T  26288174 gtctttgtagagagaatctcttgagttgggaaaaacattgtaaacaccttgggtagtgag-atttcacca-ttggaaggatctaaagcttcctcttgtgt 26288077  T
Q  101 cttctcttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaagctattgtttcttgtaac 200  Q
    |||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||| |||||||||||||||||||| |||||||| |||||||||||    
T  26288076 cttctcttttagggttcatattgtgagagtgggg-aacacaaatgggtagaaactaggacttgttcttgtgtaagcttgcaagctatt-tttcttgtaac 26287979  T
Q  201 ccttt 205  Q
     ||||    
T  26287978 acttt 26287974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 26301431 - 26301231
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtgt 100  Q
    ||||||||||||||  ||||||| ||||||||||||||||||| |||||||||||||||| | ||||  | |||||||||| ||||||||||||| ||||    
T  26301431 gtctttgtagagagaatctcttgagttgggaaaaacattgtaaacaccttgggtagtgag-atttcacca-ttggaaggatctaaagcttcctcttgtgt 26301334  T
Q  101 cttctcttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaagctattgtttcttgtaac 200  Q
    |||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||| |||||||||||||||||||| |||||||| |||||||||||    
T  26301333 cttctcttttagggttcatattgtgagagtgggg-aacacaaatgggtagaaactaggacttgttcttgtgtaagcttgcaagctatt-tttcttgtaac 26301236  T
Q  201 ccttt 205  Q
     ||||    
T  26301235 acttt 26301231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 26313425 - 26313225
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtgt 100  Q
    ||||||||||||||  ||||||| ||||||||||||||||||| |||||||||||||||| | ||||  | |||||||||| ||||||||||||| ||||    
T  26313425 gtctttgtagagagaatctcttgagttgggaaaaacattgtaaacaccttgggtagtgag-atttcacca-ttggaaggatctaaagcttcctcttgtgt 26313328  T
Q  101 cttctcttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaagctattgtttcttgtaac 200  Q
    |||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||| |||||||||||||||||||| |||||||| |||||||||||    
T  26313327 cttctcttttagggttcatattgtgagagtgggg-aacacaaatgggtagaaactaggacttgttcttgtgtaagcttgcaagctatt-tttcttgtaac 26313230  T
Q  201 ccttt 205  Q
     ||||    
T  26313229 acttt 26313225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 7412620 - 7412420
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtgt 100  Q
    ||||||||||||||  |||||||||||||||||  |||||||| |||||||||||||||| | ||||  | ||| ||||||  |||||||||| |  |||    
T  7412620 gtctttgtagagaggatctcttgggttgggaaa--cattgtaaacaccttgggtagtgag-atttcacca-ttgaaaggatcaaaagcttccttttatgt 7412525  T
Q  101 cttctcttttagggttcat-attgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaagctattgtttcttgtaa 199  Q
    ||||||||  ||||||||| |||| ||||||||| ||||||| ||||||||||  |||| |||||||||||||||||||| ||| |||  ||||||||||    
T  7412524 cttctctt--agggttcattattgagagagtggg-aaacacaaatgggtagaaattaggtcttgttcttgtgtaagcttgcaagttat--tttcttgtaa 7412430  T
Q  200 ccctttgtaa 209  Q
    | ||||||||    
T  7412429 ctctttgtaa 7412420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 19175571 - 19175772
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtgt 100  Q
    |||||||||| |||  |||||||| ||||||||  |||||||| |||||||||||||||| | |||| || ||||||||||  |||| ||||| | ||||    
T  19175571 gtctttgtagtgaggatctcttggattgggaaa--cattgtaaacaccttgggtagtgag-atttcacta-ttggaaggatcaaaagtttccttttgtgt 19175666  T
Q  101 cttctcttttagggttcat-attgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaagctattgtttcttgtaa 199  Q
    ||||||||  ||||||||| |||| ||||||||| ||||||| ||| ||||||  |||| |||||||||||||||||||| | |||||| ||||||||||    
T  19175667 cttctctt--agggttcatcattgagagagtggg-aaacacaaatgtgtagaagttaggtcttgttcttgtgtaagcttgcaggctatt-tttcttgtaa 19175762  T
Q  200 ccctttgtaa 209  Q
    | ||||||||    
T  19175763 ctctttgtaa 19175772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 17 - 209
Target Start/End: Complemental strand, 4456292 - 4456107
Alignment:
Q  17 tctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtgtcttctcttttagggtt 116  Q
    |||||||||||||||||  |||||||| |||||||||||||||| | ||||  | || |||||||  |||||||||| | ||||||||||||| ||||||    
T  4456292 tctcttgggttgggaaa--cattgtaaacaccttgggtagtgag-atttcacca-ttagaaggatcaaaagcttccttttgtgtcttctcttt-agggtt 4456198  T
Q  117 cat-attgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaagctattgtttcttgtaaccctttgtaa 209  Q
    ||| |||| ||||||||| || |||| ||||||||||  || | ||||||||||||||||||||  ||||||  ||||||||||| ||||||||    
T  4456197 catcattgagagagtgggtaa-cacaaatgggtagaaattatgtcttgttcttgtgtaagcttgccagctat--tttcttgtaactctttgtaa 4456107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 7289778 - 7289831
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggt 54  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  7289778 gtctttgttgagagtgtctcttgggttgggaaaaacattgtaatcaccttgggt 7289831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 107 - 209
Target Start/End: Original strand, 7289831 - 7289933
Alignment:
Q  107 ttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgt-aagcttgaaagctattgtttcttgtaacccttt 205  Q
    ||||||||||||||||||||||||||||||||||  | ||||||||| ||||| |||||| ||||| ||||||||| ||||  | ||||||||||| |||    
T  7289831 ttttagggttcatattgtgagagtggggaaacaccaaagggtagaatatagggtttgttcatgtgtaaagcttgaaggctagag-ttcttgtaacctttt 7289929  T
Q  206 gtaa 209  Q
    ||||    
T  7289930 gtaa 7289933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 25328005 - 25328058
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggt 54  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  25328005 gtctttgatgagagtgtctcttgggttgggaaaaacattgtaatcaccttgggt 25328058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 25328131 - 25328184
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggt 54  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  25328131 gtctttgatgagagtgtctcttgggttgggaaaaacattgtaatcaccttgggt 25328184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 107 - 186
Target Start/End: Original strand, 25328184 - 25328264
Alignment:
Q  107 ttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgt-aagcttgaaagcta 186  Q
    ||||||||||||| ||||||||||||||||||||  | ||||||||||||||| |||||| ||||| ||||||||| ||||    
T  25328184 ttttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaggcta 25328264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 39784685 - 39784728
Alignment:
Q  10 gagagtgtctcttgggttgggaaaaacattgtaatcaccttggg 53  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||    
T  39784685 gagagagtctcttaggttgggaaaaacattgtaatcaccttggg 39784728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 143 - 209
Target Start/End: Original strand, 19752347 - 19752412
Alignment:
Q  143 atgggtagaatctagggcttgttcttgtgtaagcttgaaagctattgtttcttgtaaccctttgtaa 209  Q
    ||||||||||  |||| |||||||||||||||||||| |||||||| ||||||||||| | ||||||    
T  19752347 atgggtagaaattaggacttgttcttgtgtaagcttgcaagctatt-tttcttgtaactcattgtaa 19752412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 23799393 - 23799573
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaa-gcttcctctagtg 99  Q
    ||||||||||||||  |||||||||||||| ||  |||||||| ||||||| |||| ||| | ||||  | ||||||||||  ||| ||||||| | |||    
T  23799393 gtctttgtagagaggatctcttgggttggggaa--cattgtaaacaccttgagtagggag-atttcacca-ttggaaggatcaaaaagcttccttttgtg 23799488  T
Q  100 tcttctcttttagggttcatattgtgagagtggg-gaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaagcta 186  Q
    | ||| |||  ||| |||||||||||| |||||| || ||| | ||||||||||  |||| |||||||||||||||||||| ||||||    
T  23799489 ttttccctt--aggattcatattgtgacagtgggtgacacaaa-atgggtagaaattaggtcttgttcttgtgtaagcttgtaagcta 23799573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 4696425 - 4696482
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgag 60  Q
    |||||||||| |||  |||||||||||||||||  |||||||| ||||||||||||||||    
T  4696425 gtctttgtagtgaggatctcttgggttgggaaa--cattgtaaacaccttgggtagtgag 4696482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 9054240 - 9054294
Alignment:
Q  4 tttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgag 60  Q
    ||||||| |||  |||||||||||||  |||||||| ||||||||||||||||||||    
T  9054240 tttgtagtgagattctcttgggttgg--aaaacattataatcaccttgggtagtgag 9054294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 5702297 - 5702354
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgag 60  Q
    |||||||||| |||  ||||||||||||||  ||| ||||||| ||||||||||||||||    
T  5702297 gtctttgtagtgaggatctcttgggttggg--aaatattgtaaacaccttgggtagtgag 5702354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 35)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 20357357 - 20357566
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtgt 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  20357357 gtctttgttgagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgt 20357456  T
Q  101 cttctcttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgt-aagcttgaaagctattgtttcttgtaa 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||    
T  20357457 cttctcttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcatgttcttgtgtaaagcttgaaggctattgtttcttgtaa 20357556  T
Q  200 ccctttgtaa 209  Q
    ||||||||||    
T  20357557 ccctttgtaa 20357566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 2058255 - 2058044
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagtt--ggaaggatttaaagcttcctctagt 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || ||||| ||||||||||||||||    
T  2058255 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttgggggaggatctaaagcttcctctagt 2058156  T
Q  99 gtcttctcttttagggttcatattgtgagagtggggaaac-acatatgggtagaatctagggcttgttcttgtgtaagcttgaaagctattgtttcttgt 197  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  2058155 gtcttctcttttagggttcatattgtgagagtggggaaacaacatatgggtagaatctagggcttgttcttgtgtaagcttgaatgctattgtttcttgt 2058056  T
Q  198 aaccctttgtaa 209  Q
    ||||||||||||    
T  2058055 aaccctttgtaa 2058044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 1533254 - 1533462
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtgt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | |||||||||| ||||||||||||||||||    
T  1533254 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcacca-ttggaaggatctaaagcttcctctagtgt 1533352  T
Q  101 cttctcttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttg-ttcttgtgtaagcttgaaagctattgtttcttgtaa 199  Q
    ||||||||||||||||||||||||||||||||| ||||||  | |||||||||||||| |||| |||||||||||||||| |||||||||||||||||||    
T  1533353 cttctcttttagggttcatattgtgagagtgggaaaacaccaaagggtagaatctaggtcttgtttcttgtgtaagcttgcaagctattgtttcttgtaa 1533452  T
Q  200 ccctttgtaa 209  Q
    ||||||||||    
T  1533453 ccctttgtaa 1533462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 21640092 - 21639887
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtgt 100  Q
    ||||||||||||||  ||||||||||||||||||||||||||| |||||||||||||||| | ||||  | |||||||||| ||||||||||||||||||    
T  21640092 gtctttgtagagaggatctcttgggttgggaaaaacattgtaaacaccttgggtagtgag-atttcacca-ttggaaggatctaaagcttcctctagtgt 21639995  T
Q  101 cttctcttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaagctattgtttcttgtaac 200  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||    
T  21639994 cttctcttttagggttcatattgtgagagtggggaaacacaaatgggtagaatctaggtcttgttcttgtgtaagcttgcaagctatt-tttcttgtaac 21639896  T
Q  201 cctttgtaa 209  Q
    |||||||||    
T  21639895 cctttgtaa 21639887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 21646290 - 21646089
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtgt 100  Q
    ||||||||||||||  ||||||||||||||||||||||||||| |||||||||||||||| | ||||  | |||||||||| |||| |||||||||||||    
T  21646290 gtctttgtagagaggatctcttgggttgggaaaaacattgtaaacaccttgggtagtgag-atttcacca-ttggaaggatctaaatcttcctctagtgt 21646193  T
Q  101 cttctcttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaagctattgtttcttgtaac 200  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||    
T  21646192 cttctcttttagggttcatattgtgagagtggggaaacacaaatgggtagaatctaggtcttgttcttgtgtaagcttgcaagctatt-tttcttgtaac 21646094  T
Q  201 ccttt 205  Q
    |||||    
T  21646093 ccttt 21646089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 18413922 - 18413718
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtgt 100  Q
    |||||||||| |||  ||||||||||||||||||||| ||||| |||||||||||||||| | ||||  | |||||||||| | ||||||||||| ||||    
T  18413922 gtctttgtagtgaggatctcttgggttgggaaaaacaatgtaaacaccttgggtagtgag-atttcacca-ttggaaggatcttaagcttcctcttgtgt 18413825  T
Q  101 cttctcttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaagctattgtttcttgtaac 200  Q
    |||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||| || ||||| |||||||||||    
T  18413824 cttc-cttttagggttcatattgtgagagtggggaaacacaaatgggtagaaactaggacttgttcttgtgtaagcttgcaatctatt-tttcttgtaac 18413727  T
Q  201 cctttgtaa 209  Q
    |||||||||    
T  18413726 cctttgtaa 18413718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 18409046 - 18408842
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtgt 100  Q
    |||||||||| |||  ||||||||||||||||||||||||||| |||||||||||||||| | ||||  | ||  |||||| | ||||||||||| ||||    
T  18409046 gtctttgtagtgaggatctcttgggttgggaaaaacattgtaaacaccttgggtagtgag-atttcacca-ttaaaaggatcttaagcttcctcttgtgt 18408949  T
Q  101 cttctcttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaagctattgtttcttgtaac 200  Q
    |||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||| ||| |||| |||||||||||    
T  18408948 cttc-cttttagggttcatattgtgagagtggggaaacacaaatgggtagaaactaggacttgttcttgtgtaagcttgcaagttatt-tttcttgtaac 18408851  T
Q  201 cctttgtaa 209  Q
    |||||||||    
T  18408850 cctttgtaa 18408842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 209
Target Start/End: Complemental strand, 2479600 - 2479415
Alignment:
Q  17 tctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtgtcttctcttttagggtt 116  Q
    |||||||||||||||||  |||||||| |||||||||||||||| | ||||  | ||||||||||  |||||||||| |  | |||||||||| ||||||    
T  2479600 tctcttgggttgggaaa--cattgtaaacaccttgggtagtgag-atttcacca-ttggaaggatcaaaagcttccttttatatcttctcttt-agggtt 2479506  T
Q  117 cat-attgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaagctattgtttcttgtaaccctttgtaa 209  Q
    ||| |||| ||||||||| ||||||| ||||||||||  |||| |||||||||||||||||||| |||||||  |||||| |||| ||||||||    
T  2479505 cattattgagagagtggg-aaacacacatgggtagaaattaggtcttgttcttgtgtaagcttgcaagctat--tttcttataactctttgtaa 2479415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 33 - 205
Target Start/End: Complemental strand, 21983536 - 21983369
Alignment:
Q  33 aaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtgtcttctcttttagggttcatattgtgagagtgg 132  Q
    ||||||||||| |||||||||||||||| | ||||  | ||||||||||   ||||||||| | |||| |||||||| |||||||||||| |||||||||    
T  21983536 aaacattgtaaacaccttgggtagtgag-atttcacca-ttggaaggatcataagcttccttttgtgttttctcttt-agggttcatattttgagagtgg 21983440  T
Q  133 g-gaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaagctattgtttcttgtaacccttt 205  Q
    | || ||| | |||||||||| ||||| |||||||||||||||||||| |||||||  ||||||||||| ||||    
T  21983439 gtgacacaaa-atgggtagaaactaggtcttgttcttgtgtaagcttgcaagctat--tttcttgtaactcttt 21983369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 47263946 - 47263764
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtgt 100  Q
    |||||||||| |||  |||||| ||||||||||  ||||||||  ||||||||||||||| | ||||  | ||||||||||  |||||||||| | ||||    
T  47263946 gtctttgtagtgagaatctcttcggttgggaaa--cattgtaaataccttgggtagtgag-atttcacca-ttggaaggatcaaaagcttccttttgtgt 47263851  T
Q  101 cttctcttttagggttcat-attgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaagctatt 188  Q
    ||||| ||| ||||||||| |||| ||||||||| ||||||| |||| |||||  |||| |||||||||||||||||||| ||||||||    
T  47263850 cttctattt-agggttcattattgagagagtggg-aaacacaaatggatagaaattaggtcttgttcttgtgtaagcttgcaagctatt 47263764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 106 - 209
Target Start/End: Complemental strand, 12406512 - 12406409
Alignment:
Q  106 cttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgt-aagcttgaaagctattgtttcttgtaaccctt 204  Q
    |||||||||||||||||||||||||||||||||||  | ||||||||||||||| |||||| ||||| ||||||||| ||||  | ||||||||||| ||    
T  12406512 cttttagggttcatattgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag-ttcttgtaaccttt 12406414  T
Q  205 tgtaa 209  Q
    |||||    
T  12406413 tgtaa 12406409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 12397144 - 12397091
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggt 54  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  12397144 gtctttgttgagagtgtctcttgggttgggaaaaacattgtaatcaccttgggt 12397091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 31109436 - 31109489
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggt 54  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  31109436 gtctttgttgagagtgtctcttgggttgggaaaaacattgtaatcaccttgggt 31109489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 4873361 - 4873310
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgg 52  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  4873361 gtctttgttgagagtgtctcttgggttgggaaaaacattgtaatcaccttgg 4873310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 12406564 - 12406513
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgg 52  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  12406564 gtctttgttgagagtgtctcttgggttgggaaaaacattgtaatcaccttgg 12406513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 72 - 209
Target Start/End: Original strand, 44848568 - 44848702
Alignment:
Q  72 ttggaaggatttaaagcttcctctagtgtcttctcttttagggttcat-attgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgt 170  Q
    ||||||||||  |||||||||| | ||||||||||||| || |||||| |||| ||||||||| ||||||| ||||||||||  |||| ||| |||||||    
T  44848568 ttggaaggatcaaaagcttccttttgtgtcttctcttt-agagttcattattgagagagtggg-aaacacaaatgggtagaaattaggtcttattcttgt 44848665  T
Q  171 gtaagcttgaaagctattgtttcttgtaaccctttgtaa 209  Q
    ||||||||| ||||  || ||||||||||| ||||||||    
T  44848666 gtaagcttgcaagc--ttttttcttgtaactctttgtaa 44848702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 33 - 186
Target Start/End: Complemental strand, 29160055 - 29159904
Alignment:
Q  33 aaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaa-gcttcctctagtgtcttctcttttagggttcatattgtgagagtg 131  Q
    ||||||||||| |||||||||||||||| | ||||  | ||||||||||  ||| ||||||| | |||| |||||||  ||| |||||||||||||||||    
T  29160055 aaacattgtaaacaccttgggtagtgag-atttcaaca-ttggaaggatcaaaaagcttccttttgtgttttctctt--aggattcatattgtgagagtg 29159960  T
Q  132 gg-gaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaagcta 186  Q
    || || ||| | ||||||||||  |||| |||||||||||||||||||| ||||||    
T  29159959 ggtgacacaaaaatgggtagaaattaggtcttgttcttgtgtaagcttgtaagcta 29159904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 107 - 174
Target Start/End: Complemental strand, 12397091 - 12397024
Alignment:
Q  107 ttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgtaa 174  Q
    |||||||||||||||||||| |||||||||||||  | ||||||||||||||| |||||| |||||||    
T  12397091 ttttagggttcatattgtgatagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 12397024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 24024179 - 24024232
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggt 54  Q
    |||||||| |||||||||||||||||| |||||||||||||||||||| |||||    
T  24024179 gtctttgttgagagtgtctcttgggtttggaaaaacattgtaatcaccgtgggt 24024232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 21989188 - 21988991
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtgt 100  Q
    |||||||||| |||  |||||||||||||||||  |||||||| ||||||||||||||| || || |  | ||||||||||   ||||||||| || |||    
T  21989188 gtctttgtagtgaggatctcttgggttgggaaa--cattgtaaacaccttgggtagtga-gattttacca-ttggaaggatcataagcttcctttattgt 21989093  T
Q  101 cttctcttttagggttcatattgtgagagtggg-gaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaagctattgtttcttgtaa 199  Q
     ||||| ||||||||||||||| | |||||||| || ||| | |||||||||| |||||  || ||||||| |||||||| || ||||  ||||||||||    
T  21989092 tttctc-tttagggttcatatttttagagtgggtgacaca-aaatgggtagaaactaggttttattcttgtataagcttgcaatctat--tttcttgtaa 21988997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 209
Target Start/End: Complemental strand, 2580533 - 2580469
Alignment:
Q  143 atgggtagaatctagggcttgttcttgtgtaagcttgaaagctattgtttcttgtaaccctttgtaa 209  Q
    |||||||||| ||||| |||||||||||||||||||| |||||||  ||||||||||| | ||||||    
T  2580533 atgggtagaaactaggacttgttcttgtgtaagcttgcaagctat--tttcttgtaactcattgtaa 2580469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 9185128 - 9185189
Alignment:
Q  143 atgggtagaatctagggcttgttcttgtgtaagcttgaaagctattgtttcttgtaacccttt 205  Q
    ||||||||||  |||| |||||||||||||||||||| |||||||| ||||||||||| ||||    
T  9185128 atgggtagaaattaggacttgttcttgtgtaagcttgcaagctatt-tttcttgtaacacttt 9185189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 143 - 209
Target Start/End: Original strand, 9189961 - 9190026
Alignment:
Q  143 atgggtagaatctagggcttgttcttgtgtaagcttgaaagctattgtttcttgtaaccctttgtaa 209  Q
    ||||||||||  |||| |||||||||||||||||||| |||||||| ||||||||||| | ||||||    
T  9189961 atgggtagaaattaggacttgttcttgtgtaagcttgcaagctatt-tttcttgtaactcattgtaa 9190026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 4796485 - 4796542
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgag 60  Q
    |||||||||| |||  |||||||||||||  |||||||||||| ||||||||||||||||    
T  4796485 gtctttgtagtgaggatctcttgggttgg--aaaacattgtaaacaccttgggtagtgag 4796542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 20284369 - 20284312
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgag 60  Q
    |||||||||| |||  |||||||||||||||||  |||||||| ||||||||||||||||    
T  20284369 gtctttgtagtgaggttctcttgggttgggaaa--cattgtaaacaccttgggtagtgag 20284312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 23402830 - 23402887
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgag 60  Q
    |||||||||| |||  |||||||||||||||||  |||||||| ||||||||||||||||    
T  23402830 gtctttgtagtgaggttctcttgggttgggaaa--cattgtaaacaccttgggtagtgag 23402887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 186
Target Start/End: Original strand, 24024232 - 24024312
Alignment:
Q  107 ttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgt-aagcttgaaagcta 186  Q
    |||||||||||||  |||||||||||| ||| ||  | ||||||||||||||| |||||| ||||| ||||||||| ||||    
T  24024232 ttttagggttcatcgtgtgagagtgggaaaataccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaggcta 24024312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 2580654 - 2580613
Alignment:
Q  17 tctcttgggttgggaaaaacattgtaatcaccttgggtagtgag 60  Q
    |||||||||||||  |||||||||||| ||||||||||||||||    
T  2580654 tctcttgggttgg--aaaacattgtaaacaccttgggtagtgag 2580613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 2647514 - 2647571
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgag 60  Q
    |||||||||| |||  ||||||||||||||  |||||| |||| ||||||||||||||||    
T  2647514 gtctttgtagtgaggatctcttgggttggg--aaacatggtaagcaccttgggtagtgag 2647571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 9185007 - 9185048
Alignment:
Q  17 tctcttgggttgggaaaaacattgtaatcaccttgggtagtgag 60  Q
    |||||||||||||||||  |||||||| ||||||||||||||||    
T  9185007 tctcttgggttgggaaa--cattgtaaacaccttgggtagtgag 9185048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 9189840 - 9189881
Alignment:
Q  17 tctcttgggttgggaaaaacattgtaatcaccttgggtagtgag 60  Q
    |||||||||||||||||  |||||||| ||||||||||||||||    
T  9189840 tctcttgggttgggaaa--cattgtaaacaccttgggtagtgag 9189881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 21812099 - 21812143
Alignment:
Q  10 gagagtgtctcttgggttggg-aaaaacattgtaatcaccttggg 53  Q
    |||||||| |||| ||||||| |||||||||||||||||||||||    
T  21812099 gagagtgtttcttaggttggggaaaaacattgtaatcaccttggg 21812143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 171
Target Start/End: Original strand, 31109489 - 31109553
Alignment:
Q  107 ttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtg 171  Q
    |||||||||||||| |||||||||||| ||| |   | ||||||||||||||| |||||| ||||    
T  31109489 ttttagggttcatagtgtgagagtgggaaaatatcaaagggtagaatctagggtttgttcatgtg 31109553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 44847942 - 44847999
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgag 60  Q
    |||||||||| |||  ||||||||||||||  ||||||||||| |||||||| |||||||    
T  44847942 gtctttgtagtgaggatctcttgggttggg--aaacattgtaaacaccttggatagtgag 44847999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 46516122 - 46516179
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgag 60  Q
    |||||||||| |||  ||||||| |||||||||  |||||||| ||||||||||||||||    
T  46516122 gtctttgtagtgaggatctcttgagttgggaaa--cattgtaaacaccttgggtagtgag 46516179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 24742227 - 24742019
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  24742227 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgt 24742128  T
Q  101 cttctcttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaagctattgtttcttgtaac 200  Q
    ||||||||||||||||||||||||||||||||||||||||  | ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  24742127 cttctcttttagggttcatattgtgagagtggggaaacaccaaagggtagaatctagggtttgttcttgtgtaagcttgaaggctattgtttcttgtaac 24742028  T
Q  201 cctttgtaa 209  Q
    |||||||||    
T  24742027 cctttgtaa 24742019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 29760928 - 29760720
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaa-cattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtg 99  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  29760928 gtctttgtagagagtgtctcttgggttgggaaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtg 29760829  T
Q  100 tcttctcttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttg-ttcttgtgtaagcttgaaagctattgtttcttgta 198  Q
    |||||||  |||||||||||| |||||||||||||||||||  | |||||||||||||| |||| |||||||||||||||| | ||||||||||||||||    
T  29760828 tcttctc--ttagggttcatagtgtgagagtggggaaacaccaaagggtagaatctaggtcttgtttcttgtgtaagcttgcaggctattgtttcttgta 29760731  T
Q  199 accctttgtaa 209  Q
    |||||||||||    
T  29760730 accctttgtaa 29760720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 28468351 - 28468553
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtgt 100  Q
    |||||||||| |||  ||||||||||||||||||| ||||||| |||||||||||||||| | ||||  | |||||||||| ||||||||||||| ||||    
T  28468351 gtctttgtagtgaggatctcttgggttgggaaaaatattgtaaacaccttgggtagtgag-atttcacca-ttggaaggatctaaagcttcctcttgtgt 28468448  T
Q  101 cttctcttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaagctattgtttcttgtaac 200  Q
    ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||| ||||||||||||| || ||||| |||||||||||    
T  28468449 cttctcttttagggttcatattgagagagtggggaaacacaaatgggtagaatctaggtcttgttattgtgtaagcttgcaaactattttttcttgtaac 28468548  T
Q  201 ccttt 205  Q
     ||||    
T  28468549 acttt 28468553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 17 - 209
Target Start/End: Original strand, 31985466 - 31985652
Alignment:
Q  17 tctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtgtcttctcttttagggtt 116  Q
    |||||||||||||||||  |||||||| |||||||||||||||  | ||||  | | ||||||||  |||||||||| | ||||||||||||||||||||    
T  31985466 tctcttgggttgggaaa--cattgtaaacaccttgggtagtgaa-atttcacca-tgggaaggatcaaaagcttccttttgtgtcttctcttttagggtt 31985561  T
Q  117 catattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaagctattgtttcttgtaaccctttgtaa 209  Q
    || ||||||||||| |||||||||| ||||||||||  |||| |||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  31985562 cacattgtgagagt-gggaaacacaaatgggtagaaattaggacttgttcttgtgtaagcttgcaagctatt-tttcttgtaaccctttgtaa 31985652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 5396488 - 5396686
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtgt 100  Q
    |||||||||| |||  |||||||||||||||||  |||||||| |||||||||||||||| | ||||  | ||||||| ||  ||||||| || | ||||    
T  5396488 gtctttgtagtgaggatctcttgggttgggaaa--cattgtaaacaccttgggtagtgag-atttcacca-ttggaagaatcaaaagctttcttttgtgt 5396583  T
Q  101 cttctcttttagggttcat-attgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaagctattgtttcttgtaa 199  Q
    ||||||||| ||||||||| |||| ||||||| | || |||| ||||||||||  |||| |||||||||||||||||||| |||||||  ||||||||||    
T  5396584 cttctcttt-agggttcatcattgagagagtgagtaa-cacaaatgggtagaaattaggtcttgttcttgtgtaagcttgcaagctat--tttcttgtaa 5396679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 8689313 - 8689509
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtgt 100  Q
    |||||||||| |||  |||||||||||||||||  |||| ||| |||||||| ||||||| | ||||  | ||||||||||  |||| ||||| | ||||    
T  8689313 gtctttgtagtgaggatctcttgggttgggaaa--cattttaaacaccttggatagtgag-atttcacca-ttggaaggatcaaaagtttccttttgtgt 8689408  T
Q  101 cttctcttttagggttcat-attgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaagctattgtttcttgtaa 199  Q
    ||||||||  ||||||||| |||| ||||||||| ||||||| || |||||||  |||| |||||||||||||||||||| |||||||  ||||||||||    
T  8689409 cttctctt--agggttcatcattgagagagtggg-aaacacaaattggtagaaattaggtcttgttcttgtgtaagcttgcaagctat--tttcttgtaa 8689503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 51520690 - 51520637
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggt 54  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  51520690 gtctttgttgagagtgtctcttgggttgggaaaaacattgtaatcaccttgggt 51520637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 16623110 - 16623281
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtgt 100  Q
    |||||||||| |||  |||||||||||||||||  |||||||| ||||||||||||||| || ||||  | ||||||||||  |||||||||| |  |||    
T  16623110 gtctttgtagtgaggatctcttgggttgggaaa--cattgtaaacaccttgggtagtga-gatttcacca-ttggaaggatcaaaagcttccttt--tgt 16623203  T
Q  101 cttctcttttagggttcatattgtgagagtggg-gaaacacatatgggtagaatctagggcttgttcttgtgtaagctt 178  Q
     || ||||||||| ||||||||||||||||||| || ||| | ||||||||||  |||| ||||||||| |||||||||    
T  16623204 gttttcttttaggattcatattgtgagagtgggtgacaca-aaatgggtagaaattaggtcttgttcttctgtaagctt 16623281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 18712618 - 18712671
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggt 54  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||||||||||    
T  18712618 gtctttgttgagagtgtctcttgggttgggaaaaacattgttatcaccttgggt 18712671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 107 - 209
Target Start/End: Complemental strand, 51520637 - 51520535
Alignment:
Q  107 ttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgt-aagcttgaaagctattgtttcttgtaacccttt 205  Q
    ||||||||||||||||  ||||||||||||||||  | ||||||||||||||| |||||| ||||| ||||||||| ||||  | ||||||||||| |||    
T  51520637 ttttagggttcatattaagagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag-ttcttgtaacctttt 51520539  T
Q  206 gtaa 209  Q
    ||||    
T  51520538 gtaa 51520535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 72 - 200
Target Start/End: Complemental strand, 5147891 - 5147766
Alignment:
Q  72 ttggaaggatttaaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggg-gaaacacatatgggtagaatctagggcttgttcttgt 170  Q
    ||||||||||   ||||||||| | |||| |||||||| |||||||||||||||||| |||| || ||| | ||||||||||  |||| |||||||||||    
T  5147891 ttggaaggatcataagcttccttttgtgttttctcttt-agggttcatattgtgagaatgggtgacacaaa-atgggtagaaattaggccttgttcttgt 5147794  T
Q  171 gtaagcttgaaagctattgtttcttgtaac 200  Q
    ||||||||| |||||||  |||||||||||    
T  5147793 gtaagcttgcaagctat--tttcttgtaac 5147766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 16628689 - 16628815
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtgt 100  Q
    |||||||||| |||  |||||||||||||||||  |||||||| ||||||||||||||| || ||||  | ||||||||||  |||||||||| |  |||    
T  16628689 gtctttgtagtgaggatctcttgggttgggaaa--cattgtaaacaccttgggtagtga-gatttcacca-ttggaaggatcaaaagcttccttt--tgt 16628782  T
Q  101 cttctcttttagggttcatattgtgagagtggg 133  Q
     || ||||||||| |||||||||||||||||||    
T  16628783 gttttcttttaggattcatattgtgagagtggg 16628815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 3777829 - 3777628
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaa-gcttcctctagtg 99  Q
    |||||||||| |||  |||||||||||||||||  |||||||| |||||||||||||||| | ||||  | |||||| |||  ||| ||||||| | ||     
T  3777829 gtctttgtagtgaggatctcttgggttgggaaa--cattgtaaacaccttgggtagtgag-atttcacca-ttggaatgatcaaaaagcttccttttgta 3777734  T
Q  100 tcttctcttttagggttcatattgtgagagtggg-gaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaagctattgtttcttgta 198  Q
    | |||||||  ||| ||||||||||||||||||| || ||| | ||||||||||  |||  |||||||||||||||| ||| |||||||  |||||||||    
T  3777733 ttttctctt--aggattcatattgtgagagtgggtgacacaaa-atgggtagaaattagatcttgttcttgtgtaagtttgcaagctat--tttcttgta 3777639  T
Q  199 accctttgtaa 209  Q
    || ||||||||    
T  3777638 actctttgtaa 3777628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 9224259 - 9224312
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggt 54  Q
    |||||||| |||||||||||||||||| || |||||||||||||||||||||||    
T  9224259 gtctttgttgagagtgtctcttgggtttgggaaaacattgtaatcaccttgggt 9224312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 9229046 - 9229099
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggt 54  Q
    |||||||| |||||||||||||||||| || |||||||||||||||||||||||    
T  9229046 gtctttgttgagagtgtctcttgggtttgggaaaacattgtaatcaccttgggt 9229099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 107 - 186
Target Start/End: Original strand, 9224312 - 9224392
Alignment:
Q  107 ttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgt-aagcttgaaagcta 186  Q
    |||||||||||||| |||||||||||||||||||  | ||||||| ||||||| |||||| ||||| ||||||||| ||||    
T  9224312 ttttagggttcatagtgtgagagtggggaaacaccaaagggtagagtctagggtttgttcatgtgtaaagcttgaaggcta 9224392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 107 - 186
Target Start/End: Original strand, 9229099 - 9229179
Alignment:
Q  107 ttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgt-aagcttgaaagcta 186  Q
    |||||||||||||| |||||||||||||||||||  | ||||||| ||||||| |||||| ||||| ||||||||| ||||    
T  9229099 ttttagggttcatagtgtgagagtggggaaacaccaaagggtagagtctagggtttgttcatgtgtaaagcttgaaggcta 9229179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 45347678 - 45347721
Alignment:
Q  10 gagagtgtctcttgggttgggaaaaacattgtaatcaccttggg 53  Q
    ||||||||||||| ||||||||||||||||||||||||||||||    
T  45347678 gagagtgtctcttaggttgggaaaaacattgtaatcaccttggg 45347721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 108 - 186
Target Start/End: Original strand, 45357203 - 45357282
Alignment:
Q  108 tttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgt-aagcttgaaagcta 186  Q
    ||||||||||||| |||||||||||| ||| ||  | ||||||||||||||| |||||| ||||| ||||||||||||||    
T  45357203 tttagggttcatagtgtgagagtgggaaaataccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaagcta 45357282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 3814255 - 3814202
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggt 54  Q
    |||||||  |||||||| |||| |||||||||||||||||||||||||||||||    
T  3814255 gtctttgatgagagtgtttcttaggttgggaaaaacattgtaatcaccttgggt 3814202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 5732887 - 5732844
Alignment:
Q  10 gagagtgtctcttgggttgggaaaaacattgtaatcaccttggg 53  Q
    |||||||| |||| ||||||||||||||||||||||||||||||    
T  5732887 gagagtgtttcttaggttgggaaaaacattgtaatcaccttggg 5732844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 186
Target Start/End: Original strand, 45347723 - 45347802
Alignment:
Q  108 tttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgt-aagcttgaaagcta 186  Q
    ||||||||||||| |||||||||||| ||| ||  | ||||||||||||||| |||||| ||||| ||||||||| ||||    
T  45347723 tttagggttcatagtgtgagagtgggaaaataccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaggcta 45347802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 186
Target Start/End: Complemental strand, 3814202 - 3814123
Alignment:
Q  107 ttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgt-aagcttgaaagcta 186  Q
    |||||||||||||| |||||||||||| ||| ||  | |||||| |||||||| |||||| ||||| ||||||||||||||    
T  3814202 ttttagggttcatagtgtgagagtgggaaaataccaaagggtag-atctagggtttgttcatgtgtaaagcttgaaagcta 3814123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 36315047 - 36315104
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgag 60  Q
    ||||||||||||||  ||||||||||||||  ||||||||||| ||| ||||||||||||    
T  36315047 gtctttgtagagaggatctcttgggttggg--aaacattgtaaacacattgggtagtgag 36315104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 36329256 - 36329313
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgag 60  Q
    ||||||||||||||  ||||||||||||||  ||||||||||| ||| ||||||||||||    
T  36329256 gtctttgtagagaggatctcttgggttggg--aaacattgtaaacacattgggtagtgag 36329313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 18855949 - 18855906
Alignment:
Q  10 gagagtgtctcttgggttgggaaaaacattgtaatcaccttggg 53  Q
    ||||| || |||| ||||||||||||||||||||||||||||||    
T  18855949 gagagagtttcttaggttgggaaaaacattgtaatcaccttggg 18855906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 45357158 - 45357201
Alignment:
Q  10 gagagtgtctcttgggttgggaaaaacattgtaatcaccttggg 53  Q
    ||||| || |||| ||||||||||||||||||||||||||||||    
T  45357158 gagagagtttcttaggttgggaaaaacattgtaatcaccttggg 45357201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 5269017 - 5269190
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggat-ttaaagcttcctctagtg 99  Q
    |||||||||| |||  ||||||||||||||  ||||||||||| |||||||| |||||| || ||||  | ||||||||||   |||||||||| | |||    
T  5269017 gtctttgtagtgaggatctcttgggttggg--aaacattgtaaacaccttggatagtga-gatttcacca-ttggaaggatcaaaaagcttccttttgtg 5269112  T
Q  100 tcttctcttttagggttca-tattgtgagagtggg-gaaacacatatgggtagaatctagggcttgttcttgtgtaagctt 178  Q
    | |||||  ||||| |||| ||||| ||| ||||| || ||||| ||||||||||  |||| |||||||||||||||||||    
T  5269113 ttttctc--ttaggattcattattgagagtgtgggtgacacaca-atgggtagaaattaggtcttgttcttgtgtaagctt 5269190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 5112501 - 5112460
Alignment:
Q  17 tctcttgggttgggaaaaacattgtaatcaccttgggtagtgag 60  Q
    |||||||||||||||||  |||||||| ||||||||||||||||    
T  5112501 tctcttgggttgggaaa--cattgtaaacaccttgggtagtgag 5112460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 6743232 - 6743289
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgag 60  Q
    |||||||||| |||  ||||||||||||||  ||||||||||| ||||||||||| ||||    
T  6743232 gtctttgtagcgaggatctcttgggttggg--aaacattgtaaacaccttgggtaatgag 6743289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 10047645 - 10047604
Alignment:
Q  17 tctcttgggttgggaaaaacattgtaatcaccttgggtagtgag 60  Q
    |||||||||||||||||  |||||||| ||||||||||||||||    
T  10047645 tctcttgggttgggaaa--cattgtaaacaccttgggtagtgag 10047604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 25861850 - 25861907
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgag 60  Q
    |||||||||| |||  ||||||||||||||  ||||||||||| ||||||| ||||||||    
T  25861850 gtctttgtagtgaggatctcttgggttggg--aaacattgtaaacaccttgagtagtgag 25861907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 162; Significance: 1e-86; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 5674580 - 5674788
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtgt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | |||||||||| ||||||||||||||||||    
T  5674580 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcacca-ttggaaggatctaaagcttcctctagtgt 5674678  T
Q  101 cttctcttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttg-ttcttgtgtaagcttgaaagctattgtttcttgtaa 199  Q
    ||||||||||||||||||||||||||||||||||||||||  | |||||||||||||| |||| |||||||||||||||| |||||||||||||||||||    
T  5674679 cttctcttttagggttcatattgtgagagtggggaaacaccaaagggtagaatctaggtcttgtttcttgtgtaagcttgcaagctattgtttcttgtaa 5674778  T
Q  200 ccctttgtaa 209  Q
    ||||||||||    
T  5674779 ccctttgtaa 5674788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 22709290 - 22709091
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtgt 100  Q
    |||||||||| |||  |||||||||||||||||  |||||||| |||||||| ||||||| | ||||  | ||||||||||  ||| |||||||| ||||    
T  22709290 gtctttgtagtgaggatctcttgggttgggaaa--cattgtaaacaccttggatagtgag-atttcacca-ttggaaggatcaaaaacttcctcttgtgt 22709195  T
Q  101 cttctcttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaagctattgtttcttgtaac 200  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||| |||||||| |||||||||||    
T  22709194 cttctcttttagggttcatattgtgagagtggggaaacacaaatgggtagaaactaggacttgttcttgtgtaagcttgcaagctatt-tttcttgtaac 22709096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 21356317 - 21356115
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtgt 100  Q
    |||||||||| |||  ||||||||||| |||||  |||||||| |||||||||||||||| | ||||| | ||||||| ||  |||||||||| | ||||    
T  21356317 gtctttgtagtgaggatctcttgggttaggaaa--cattgtaaacaccttgggtagtgag-atttcatca-ttggaagaatcaaaagcttccttttgtgt 21356222  T
Q  101 cttctcttttagggttcat-attgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaagctattgtttcttgtaa 199  Q
    ||| ||||| ||||||||| |||| ||||||| | ||||||| ||||||||||  |||| |||||||||||||||||||| ||| |||| ||||||||||    
T  21356221 cttttcttt-agggttcattattgagagagtgag-aaacacaaatgggtagaaattaggtcttgttcttgtgtaagcttgcaagttatt-tttcttgtaa 21356125  T
Q  200 ccctttgtaa 209  Q
    | ||| ||||    
T  21356124 ctcttagtaa 21356115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 17 - 209
Target Start/End: Original strand, 5757311 - 5757496
Alignment:
Q  17 tctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtgtcttctcttttagggtt 116  Q
    |||||||||||||||||  |||||||| |||||||||||||||| | ||||  | ||||||||||  ||||||||||   ||||||||||||| ||||||    
T  5757311 tctcttgggttgggaaa--cattgtaaacaccttgggtagtgag-atttcacca-ttggaaggatcaaaagcttccttccgtgtcttctcttt-agggtt 5757405  T
Q  117 cat-attgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaagctattgtttcttgtaaccctttgtaa 209  Q
    ||| |||| ||||| | |||| |||| ||||||||||  |||| ||||||||||| |||||||| |||||||  ||||||||||| ||||||||    
T  5757406 cattattgagagagagtggaa-cacaaatgggtagaaattaggtcttgttcttgtataagcttgcaagctat--tttcttgtaactctttgtaa 5757496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 107 - 209
Target Start/End: Complemental strand, 11857154 - 11857052
Alignment:
Q  107 ttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgt-aagcttgaaagctattgtttcttgtaacccttt 205  Q
    ||||||||||||||||||||||||||||||||||  | ||||||||||||||| |||||| ||||| ||||||||| ||||  | ||||||||||| |||    
T  11857154 ttttagggttcatattgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag-ttcttgtaacctttt 11857056  T
Q  206 gtaa 209  Q
    ||||    
T  11857055 gtaa 11857052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 11857207 - 11857154
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggt 54  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  11857207 gtctttgttgagagtgtctcttgggttgggaaaaacattgtaatcaccttgggt 11857154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 14737429 - 14737482
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggt 54  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  14737429 gtctttgttgagagtgtctcttgggttgggaaaaacattgtaatcaccttgggt 14737482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 22010549 - 22010602
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggt 54  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  22010549 gtctttgttgagagtgtctcttgggttgggaaaaacattgtaatcaccttgggt 22010602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 14742289 - 14742342
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggt 54  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  14742289 gtctttgttgagagtgtctcttgggttgggaaaaacattgtaatcactttgggt 14742342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 107 - 209
Target Start/End: Original strand, 22010602 - 22010704
Alignment:
Q  107 ttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgt-aagcttgaaagctattgtttcttgtaacccttt 205  Q
    ||||||||||||||||||||||||||||||| |   | ||||||||||||||| |||||| ||||| ||||||||| ||||  | ||||||||||| |||    
T  22010602 ttttagggttcatattgtgagagtggggaaatatcaaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag-ttcttgtaacctttt 22010700  T
Q  206 gtaa 209  Q
    ||||    
T  22010701 gtaa 22010704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 107 - 186
Target Start/End: Complemental strand, 28184684 - 28184604
Alignment:
Q  107 ttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgt-aagcttgaaagcta 186  Q
    |||||||||||||| |||||||||||| ||| ||  | ||||||||||||||| |||||| ||||| ||||||||| ||||    
T  28184684 ttttagggttcatagtgtgagagtgggaaaataccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaggcta 28184604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 28155432 - 28155475
Alignment:
Q  10 gagagtgtctcttgggttgggaaaaacattgtaatcaccttggg 53  Q
    |||||||| |||| ||||||||||||||||||||||||||||||    
T  28155432 gagagtgtttcttaggttgggaaaaacattgtaatcaccttggg 28155475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 186
Target Start/End: Original strand, 14737482 - 14737562
Alignment:
Q  107 ttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgt-aagcttgaaagcta 186  Q
    |||||||||||||| |||||||||||| ||| ||  | ||||||||||||||| |||||| | ||| ||||||||| ||||    
T  14737482 ttttagggttcatagtgtgagagtgggaaaataccaaagggtagaatctagggtttgttcatatgtaaagcttgaaggcta 14737562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 186
Target Start/End: Original strand, 14742342 - 14742422
Alignment:
Q  107 ttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgt-aagcttgaaagcta 186  Q
    |||||||||||||| |||||||||||| ||| ||  | ||||||||||||||| |||||| | ||| ||||||||| ||||    
T  14742342 ttttagggttcatagtgtgagagtgggaaaataccaaagggtagaatctagggtttgttcatatgtaaagcttgaaggcta 14742422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 6438723 - 6438680
Alignment:
Q  10 gagagtgtctcttgggttgggaaaaacattgtaatcaccttggg 53  Q
    ||||| || |||| ||||||||||||||||||||||||||||||    
T  6438723 gagagagtttcttaggttgggaaaaacattgtaatcaccttggg 6438680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 186
Target Start/End: Original strand, 28155477 - 28155555
Alignment:
Q  108 tttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgt-aagcttgaaagcta 186  Q
    ||||||||||||| |||||||||||| ||| ||  | |||||| |||||||| |||||| ||||| ||||||||||||||    
T  28155477 tttagggttcatagtgtgagagtgggaaaataccaaagggtag-atctagggtttgttcatgtgtaaagcttgaaagcta 28155555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 28184740 - 28184684
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttggg---aaaaacattgtaatcaccttgggt 54  Q
    |||||||| |||||||||||||||||| ||   |||||||| |||||||||||||||    
T  28184740 gtctttgttgagagtgtctcttgggtttgggaaaaaaacatagtaatcaccttgggt 28184684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 5017313 - 5017370
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgag 60  Q
    |||||||||| |||  ||||||||||||||  ||||||||||| ||||||||||| ||||    
T  5017313 gtctttgtagtgaggatctcttgggttggg--aaacattgtaaacaccttgggtaatgag 5017370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 5572076 - 5572117
Alignment:
Q  17 tctcttgggttgggaaaaacattgtaatcaccttgggtagtgag 60  Q
    |||||||||||||||||  |||||||| ||||||||||||||||    
T  5572076 tctcttgggttgggaaa--cattgtaaacaccttgggtagtgag 5572117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 31936855 - 31936798
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgag 60  Q
    |||||||||| |||  ||| |||||||||||||  |||||||| ||||||||||||||||    
T  31936855 gtctttgtagtgaggatctattgggttgggaaa--cattgtaaacaccttgggtagtgag 31936798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 158; Significance: 3e-84; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 24787174 - 24787383
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtgt 100  Q
    |||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||    
T  24787174 gtctttgttgagagtgtctcttgggttgggaaaaacattataatcaccttgggcagtgaggagttcattagttggaaggatctaaagcttcctctagtgt 24787273  T
Q  101 cttctcttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgtaa-gcttgaaagctattgtttcttgtaa 199  Q
    |||||||||||||||||||||||||||||| |||||||||  | ||||||||||||||  |||||||||||||| ||||||| |||||||||||||||||    
T  24787274 cttctcttttagggttcatattgtgagagttgggaaacaccaaagggtagaatctaggatttgttcttgtgtaatgcttgaaggctattgtttcttgtaa 24787373  T
Q  200 ccctttgtaa 209  Q
    ||||||||||    
T  24787374 ccctttgtaa 24787383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 24202582 - 24202787
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtgt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||  | |||||||||| ||||||||||||||||||    
T  24202582 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgag-atctcacca-ttggaaggatctaaagcttcctctagtgt 24202679  T
Q  101 cttctcttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaagctattgtttcttgtaac 200  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||    
T  24202680 cttctcttttagggttcatattgtgagagtggggaaacacaaatgggtagaatctaggtcttgttcttgtgtaagcttgcaagctatt-tttcttgtaac 24202778  T
Q  201 cctttgtaa 209  Q
    |||||||||    
T  24202779 cctttgtaa 24202787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 19358657 - 19358861
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtgt 100  Q
    |||||||||| |||  ||| |||||||||||||| |||||||| |||||||||||||||| | ||||  | |||||||||| ||||||||||||| ||||    
T  19358657 gtctttgtagtgaggatcttttgggttgggaaaa-cattgtaaacaccttgggtagtgag-atttcacca-ttggaaggatctaaagcttcctcttgtgt 19358753  T
Q  101 cttctcttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaagctattgtttcttgtaac 200  Q
    ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||    
T  19358754 cttctcttttagggttcatattgagagagtggggaaacacaaatgggtagaatctaggtcttgttcttgtgtaagcttgcaagctatt-tttcttgtaac 19358852  T
Q  201 cctttgtaa 209  Q
    |||||||||    
T  19358853 cctttgtaa 19358861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 19361246 - 19361450
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtgt 100  Q
    |||||||||| |||  |||||||||||||||||| |||||||| |||||||||||||||| | ||||  | |||||||||| ||||||||||||| ||||    
T  19361246 gtctttgtagtgaggatctcttgggttgggaaaa-cattgtaaacaccttgggtagtgag-atttcacca-ttggaaggatctaaagcttcctcttgtgt 19361342  T
Q  101 cttctcttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaagctattgtttcttgtaac 200  Q
    ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||| || ||||| |||||||||||    
T  19361343 cttctcttttagggttcatattgagagagtggggaaacacaaatgggtagaatctaggtcttgttcttgtgtaagcttgcaaactatt-tttcttgtaac 19361441  T
Q  201 cctttgtaa 209  Q
    |||||||||    
T  19361442 cctttgtaa 19361450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 19366121 - 19366297
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtgt 100  Q
    |||||||||| |||  ||||||||||||||||||| ||||||| |||||||||||||||| | ||||  | |||||||||| ||||||||||||| ||||    
T  19366121 gtctttgtagtgaggatctcttgggttgggaaaaatattgtaaacaccttgggtagtgag-atttcacca-ttggaaggatctaaagcttcctcttgtgt 19366218  T
Q  101 cttctcttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgtaagcttg 179  Q
    ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  19366219 cttctcttttagggttcatattgagagagtggggaaacacaaatgggtagaatctaggtcttgttcttgtgtaagcttg 19366297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 32 - 209
Target Start/End: Original strand, 19379916 - 19380090
Alignment:
Q  32 aaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtgtcttctcttttagggttcatattgtgagagtg 131  Q
    |||||||||||| |||||||||||||||| | ||||  | |||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||    
T  19379916 aaaacattgtaaacaccttgggtagtgag-atttcacca-ttggaaggatctaaagcttcctcttgtgtcttctcttttagggttcatattgagagagtg 19380013  T
Q  132 gggaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaagctattgtttcttgtaaccctttgtaa 209  Q
    |||||||||| |||||||||||||||| |||||||||||||||||||| || ||||| ||||||||||||||||||||    
T  19380014 gggaaacacaaatgggtagaatctaggtcttgttcttgtgtaagcttgcaaactatt-tttcttgtaaccctttgtaa 19380090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 2 - 209
Target Start/End: Original strand, 13604440 - 13604641
Alignment:
Q  2 tctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtgtc 101  Q
    ||||||||| |||  |||||||||||||||||  |||||||| |||||||||||||||| | ||||  | ||||||||||  |||||||||| | |||||    
T  13604440 tctttgtagtgaggatctcttgggttgggaaa--cattgtaaacaccttgggtagtgag-atttcacca-ttggaaggatcaaaagcttccttttgtgtc 13604535  T
Q  102 ttctcttttagggttcat-attgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaagctattgtttcttgtaac 200  Q
    |||||||| ||||||||| |||| ||||||||| ||||||| ||||||||||  |||| |||||||||||||||| ||| |||||||| |||||||||||    
T  13604536 ttctcttt-agggttcattattgagagagtggg-aaacacaaatgggtagaaattaggtcttgttcttgtgtaagtttgcaagctatt-tttcttgtaac 13604632  T
Q  201 cctttgtaa 209  Q
     ||||||||    
T  13604633 tctttgtaa 13604641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 3281987 - 3281787
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtgt 100  Q
    |||||||||| |||  |||||||||||||||||  |||||||| |||||||||||||||| | ||||  | ||||||||||  |||||||||| | ||||    
T  3281987 gtctttgtagtgaggatctcttgggttgggaaa--cattgtaaacaccttgggtagtgag-atttcacca-ttggaaggatcaaaagcttccttttgtgt 3281892  T
Q  101 cttctcttttagggttcat-attgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaagctattgtttcttgtaa 199  Q
    ||||||||  ||||||||| |||| ||||||||| ||||||| ||||||||||  |||| |||||||||||||||||||| |||||||  ||||||||||    
T  3281891 cttctctt--agggttcatcattgagagagtggg-aaacacaaatgggtagaaattaggtcttgttcttgtgtaagcttgcaagctat--tttcttgtaa 3281797  T
Q  200 ccctttgtaa 209  Q
    | ||||||||    
T  3281796 ctctttgtaa 3281787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 21 - 209
Target Start/End: Original strand, 26644735 - 26644915
Alignment:
Q  21 ttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtgtcttctcttttagggttcat- 119  Q
    |||||||||||||  |||||||| ||||||| |||||||| | ||||  | ||||||||||  |||||||||| | ||||||||||||  |||||||||     
T  26644735 ttgggttgggaaa--cattgtaaacaccttgagtagtgag-atttcacca-ttggaaggatcaaaagcttccttttgtgtcttctctt--agggttcatc 26644828  T
Q  120 attgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaagctattgtttcttgtaaccctttgtaa 209  Q
    |||| ||||||| | ||||||| ||||||||||  |||| |||||||||||||||||||| |||||||  ||||||||||| ||||||||    
T  26644829 attgagagagtgag-aaacacaaatgggtagaaattaggtcttgttcttgtgtaagcttgcaagctat--tttcttgtaactctttgtaa 26644915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 41390813 - 41390760
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggt 54  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  41390813 gtctttgttgagagtgtctcttgggttgggaaaaacattgtaatcaccttgggt 41390760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 41398468 - 41398415
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggt 54  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  41398468 gtctttgttgagagtgtctcttgggttgggaaaaacattgtaatcaccttgggt 41398415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 21536387 - 21536587
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtgt 100  Q
    |||||||||| |||  |||||| ||||||  |||||||||||| ||||||||||||| || | ||||  | ||||||||||  |||||||||| | ||||    
T  21536387 gtctttgtagtgaggatctcttaggttgg--aaaacattgtaaacaccttgggtagtaag-atttcacca-ttggaaggatcgaaagcttccttttgtgt 21536482  T
Q  101 cttctcttttagggttcat-attgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaagctattgtttcttgtaa 199  Q
    ||||||||  ||||||||| |||| ||||||||| || |||| | ||||||||  || |  ||||||||||||||||||| |||||||  ||||||||||    
T  21536483 cttctctt--agggttcatcattgagagagtgggtaa-cacaaacgggtagaaattaagtattgttcttgtgtaagcttgcaagctat--tttcttgtaa 21536577  T
Q  200 ccctttgtaa 209  Q
    | ||||||||    
T  21536578 ctctttgtaa 21536587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 37070047 - 37069865
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtgt 100  Q
    |||||||||| |||  |||||||||||||||||  |||||||| |||||||| || |||| | ||||  | ||||||||||  |||||||||| | ||||    
T  37070047 gtctttgtagtgaggatctcttgggttgggaaa--cattgtaaacaccttggataatgag-atttcacca-ttggaaggatcaaaagcttccttttgtgt 37069952  T
Q  101 cttctcttttagggttcat-attgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaagctatt 188  Q
    ||||||||| | ||||||| |||| | ||||||| || |||| ||||||||||  |||| |||||||||||||||||||| || |||||    
T  37069951 cttctcttt-atggttcattattgagtgagtgggtaa-cacaaatgggtagaaattaggtcttgttcttgtgtaagcttgcaaactatt 37069865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 107 - 186
Target Start/End: Complemental strand, 41390760 - 41390680
Alignment:
Q  107 ttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgt-aagcttgaaagcta 186  Q
    |||||||||||||| |||||||||||| ||| ||  | ||||||||||||||| |||||| ||||| ||||||||| ||||    
T  41390760 ttttagggttcatagtgtgagagtgggaaaataccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaggcta 41390680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 107 - 186
Target Start/End: Complemental strand, 41398415 - 41398335
Alignment:
Q  107 ttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgt-aagcttgaaagcta 186  Q
    |||||||||||||| |||||||||||| ||| ||  | ||||||||||||||| |||||| ||||| ||||||||| ||||    
T  41398415 ttttagggttcatagtgtgagagtgggaaaataccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaggcta 41398335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 143 - 209
Target Start/End: Complemental strand, 32889583 - 32889518
Alignment:
Q  143 atgggtagaatctagggcttgttcttgtgtaagcttgaaagctattgtttcttgtaaccctttgtaa 209  Q
    ||||||||||  |||| |||||||||||||||||||| |||||||| ||||||||||| | ||||||    
T  32889583 atgggtagaaattaggacttgttcttgtgtaagcttgcaagctatt-tttcttgtaactcattgtaa 32889518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 109 - 186
Target Start/End: Original strand, 47703855 - 47703932
Alignment:
Q  109 ttagggttcatattgtgagagtggg-gaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaagcta 186  Q
    ||||| ||||||||||||||||||| || ||| | ||||||||||  |||| |||||||||||||||||||| ||||||    
T  47703855 ttaggattcatattgtgagagtgggtgacacaaa-atgggtagaaattaggtcttgttcttgtgtaagcttgtaagcta 47703932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 47098642 - 47098699
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgag 60  Q
    |||||||||| |||  |||||||||||||||||  |||||||| ||||||||||||||||    
T  47098642 gtctttgtagcgaggttctcttgggttgggaaa--cattgtaaacaccttgggtagtgag 47098699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 47102656 - 47102713
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgag 60  Q
    |||||||||| |||  |||||||||||||||||  |||||||| ||||||||||||||||    
T  47102656 gtctttgtagtgaggttctcttgggttgggaaa--cattgtaaacaccttgggtagtgag 47102713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 1054874 - 1054917
Alignment:
Q  10 gagagtgtctcttgggttgggaaaaacattgtaatcaccttggg 53  Q
    ||||| || |||| ||||||||||||||||||||||||||||||    
T  1054874 gagagagtttcttaggttgggaaaaacattgtaatcaccttggg 1054917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 25439758 - 25439801
Alignment:
Q  10 gagagtgtctcttgggttgggaaaaacattgtaatcaccttggg 53  Q
    ||||| || |||| ||||||||||||||||||||||||||||||    
T  25439758 gagagagtttcttaggttgggaaaaacattgtaatcaccttggg 25439801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 25444951 - 25444994
Alignment:
Q  10 gagagtgtctcttgggttgggaaaaacattgtaatcaccttggg 53  Q
    ||||| || |||| ||||||||||||||||||||||||||||||    
T  25444951 gagagagtttcttaggttgggaaaaacattgtaatcaccttggg 25444994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 39445722 - 39445679
Alignment:
Q  10 gagagtgtctcttgggttgggaaaaacattgtaatcaccttggg 53  Q
    ||||| || |||| ||||||||||||||||||||||||||||||    
T  39445722 gagagagtttcttaggttgggaaaaacattgtaatcaccttggg 39445679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 44023736 - 44023779
Alignment:
Q  10 gagagtgtctcttgggttgggaaaaacattgtaatcaccttggg 53  Q
    ||||| || |||| ||||||||||||||||||||||||||||||    
T  44023736 gagagagtttcttaggttgggaaaaacattgtaatcaccttggg 44023779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 22819711 - 22819657
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagt 57  Q
    |||||||||| |||  |||||||||||||||||  |||||||| |||||||||||||    
T  22819711 gtctttgtagtgaggttctcttgggttgggaaa--cattgtaaacaccttgggtagt 22819657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 13598680 - 13598623
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgag 60  Q
    |||||||||| |||  ||||||||||||| |||  |||||||| ||||||||||||||||    
T  13598680 gtctttgtagtgaggatctcttgggttggcaaa--cattgtaaacaccttgggtagtgag 13598623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 16124347 - 16124388
Alignment:
Q  17 tctcttgggttgggaaaaacattgtaatcaccttgggtagtgag 60  Q
    |||||||||||||||||  |||||||| ||||||||||||||||    
T  16124347 tctcttgggttgggaaa--cattgtaaacaccttgggtagtgag 16124388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 27104219 - 27104275
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgag 60  Q
    |||||||||| ||| ||||||||||||||||||  |||| ||| ||||||||||||||||    
T  27104219 gtctttgtagtgag-gtctcttgggttgggaaa--cattataagcaccttgggtagtgag 27104275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 29652093 - 29652036
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgag 60  Q
    |||||||||| |||  ||| |||||||||||||  |||||||| ||||||||||||||||    
T  29652093 gtctttgtagtgaggatcttttgggttgggaaa--cattgtaaacaccttgggtagtgag 29652036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 154; Significance: 8e-82; HSPs: 37)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 31180500 - 31180292
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtgt 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  31180500 gtctttgttgagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgt 31180401  T
Q  101 cttctcttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgt-aagcttgaaagctattgtttcttgtaa 199  Q
    ||||||||||| ||||||||||||||||||||||||||||  | ||||||||||||||| ||| |||||||| ||||||||| ||||  |||||||||||    
T  31180400 cttctcttttatggttcatattgtgagagtggggaaacaccaaagggtagaatctagggtttg-tcttgtgtaaagcttgaaggctagagtttcttgtaa 31180302  T
Q  200 ccctttgtaa 209  Q
    ||||||||||    
T  31180301 ccctttgtaa 31180292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 24136133 - 24135927
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtgt 100  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  | |||||||||| ||||||||||||||||||    
T  24136133 gtctttgtagaaagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcacca-ttggaaggatctaaagcttcctctagtgt 24136035  T
Q  101 cttctcttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaagctattgtttcttgtaac 200  Q
    |||||||||||||||||| |||||||||||||||||||||  | |||||||||||||| |||||||||||||||||||| |||||||| |||||||||||    
T  24136034 cttctcttttagggttcacattgtgagagtggggaaacaccaaagggtagaatctaggacttgttcttgtgtaagcttgcaagctatt-tttcttgtaac 24135936  T
Q  201 cctttgtaa 209  Q
    |||||||||    
T  24135935 cctttgtaa 24135927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 30631693 - 30631484
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagt-gaggagttcattagttggaaggatttaaagcttcctctagtg 99  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||    
T  30631693 gtctttgttgagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtggaggagttcattagttggaaggatctaaagcttcctctagtg 30631594  T
Q  100 tcttctcttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgt-aagcttgaaagctattgtttcttgta 198  Q
     |||||| |||||||||||||||||||||||||||||||||  | |||||||||||| || |||||| ||||| ||||||||| ||||  ||||||||||    
T  30631593 acttctc-tttagggttcatattgtgagagtggggaaacaccaaagggtagaatctatggtttgttcatgtgtaaagcttgaaggctagagtttcttgta 30631495  T
Q  199 accctttgtaa 209  Q
    |||||||||||    
T  30631494 accctttgtaa 30631484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 35387946 - 35387741
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtgt 100  Q
    |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| | ||||  | |||||||||| |||| |||||||||||||    
T  35387946 gtctttgtagagagggtctcttgggttggaaaaaacattgtaatcaccttgggtagtgag-atttcacca-ttggaaggatctaaaacttcctctagtgt 35387849  T
Q  101 cttctcttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaagctattgtttcttgtaac 200  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||| |||||||||||||||| |||||||| |||||||||||    
T  35387848 cttctcttttagggttcatattgtgagagtggggaaacacaaatgggtagaaactaggacttattcttgtgtaagcttgcaagctatt-tttcttgtaac 35387750  T
Q  201 cctttgtaa 209  Q
    |||||||||    
T  35387749 cctttgtaa 35387741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 38219682 - 38219477
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtgt 100  Q
    |||||||||| |||  ||||||||||||||||||||||||||| |||||||||||||||| | ||||  | |||||||||| ||||||||||||| ||||    
T  38219682 gtctttgtagtgaggatctcttgggttgggaaaaacattgtaaacaccttgggtagtgag-atttcacca-ttggaaggatctaaagcttcctcttgtgt 38219585  T
Q  101 cttctcttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaagctattgtttcttgtaac 200  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||| |||||||| |||||||||||    
T  38219584 cttctcttttagggttcatattgtgagagtggggaaacacaaatgggtagaaactaggacttgttcttgtgtaagcttgcaagctatt-tttcttgtaac 38219486  T
Q  201 cctttgtaa 209  Q
    |||||||||    
T  38219485 cctttgtaa 38219477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 91 - 209
Target Start/End: Complemental strand, 38192369 - 38192252
Alignment:
Q  91 cctctagtgtcttctcttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaagctattgt 190  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||| |||||||| |    
T  38192369 cctcttgtgtcttctcttttagggttcatattgtgagagtggggaaacacaaatgggtagaaactaggacttgttcttgtgtaagcttgcaagctatt-t 38192271  T
Q  191 ttcttgtaaccctttgtaa 209  Q
    |||||||||||||||||||    
T  38192270 ttcttgtaaccctttgtaa 38192252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 15464814 - 15464611
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtgt 100  Q
    |||||||||| |||  |||||||||||||||||  ||| |||| |||||||||||||||| | ||||  | ||||||||||  |||||||||| | ||||    
T  15464814 gtctttgtagtgaggatctcttgggttgggaaa--catcgtaaacaccttgggtagtgag-atttcacca-ttggaaggatcaaaagcttccttttgtgt 15464719  T
Q  101 cttctcttttagggttcat-attgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaagctattgtttcttgtaa 199  Q
    ||||||||||||||||||| |||||||||||||| ||||||| ||||||||||  |||| |||||||||||||||||||| |||||||| ||||||||||    
T  15464718 cttctcttttagggttcattattgtgagagtggg-aaacacaaatgggtagaaattaggtcttgttcttgtgtaagcttgcaagctatt-tttcttgtaa 15464621  T
Q  200 ccctttgtaa 209  Q
    | ||||||||    
T  15464620 ctctttgtaa 15464611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 17 - 209
Target Start/End: Original strand, 36932181 - 36932368
Alignment:
Q  17 tctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtgtcttctcttttagggtt 116  Q
    |||||||||||||||||  |||||||| |||||||||||||||| | ||||  | ||||||||||  |||||||||||| ||||||||| ||||||||||    
T  36932181 tctcttgggttgggaaa--cattgtaaacaccttgggtagtgag-atttcacca-ttggaaggatcaaaagcttcctcttgtgtcttctgttttagggtt 36932276  T
Q  117 ca-tattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaagctattgtttcttgtaaccctttgtaa 209  Q
    || ||||| |||||| |||||||||| ||||||||||  || | ||||||||| ||||| |||| |||||||| ||||||||||| ||||||||    
T  36932277 cattattgagagagt-gggaaacacaaatgggtagaaattaagtcttgttcttatgtaaacttgcaagctatt-tttcttgtaactctttgtaa 36932368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 14520510 - 14520309
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtgt 100  Q
    |||||||||| |||  |||||||||||||||||  |||||||| |||||||| ||||||| | ||||  | ||||||||||  |||||||||| | ||||    
T  14520510 gtctttgtagtgaggatctcttgggttgggaaa--cattgtaaacaccttggatagtgag-atttcacca-ttggaaggatcaaaagcttccttttgtgt 14520415  T
Q  101 cttctcttttagggttcata-ttgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaagctattgtttcttgtaa 199  Q
    ||||||||| |||||||||| ||| ||||||||| || |||| ||||||||||  |||| |||||||||||||||||||| |||||||  ||||||||||    
T  14520414 cttctcttt-agggttcataattgagagagtgggtaa-cacaaatgggtagaaattaggtcttgttcttgtgtaagcttgcaagctat--tttcttgtaa 14520319  T
Q  200 ccctttgtaa 209  Q
    | ||||||||    
T  14520318 ctctttgtaa 14520309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 9353149 - 9353350
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtgt 100  Q
    |||||||||| |||  |||||||||||||||||  |||||||| |||||||||||||||| | ||||  | ||||||||||  |||||||||| | ||||    
T  9353149 gtctttgtagtgaggatctcttgggttgggaaa--cattgtaaacaccttgggtagtgag-atttcacca-ttggaaggatcaaaagcttccttttgtgt 9353244  T
Q  101 cttctcttttagggttcat-attgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaagctattgtttcttgtaa 199  Q
    ||||||||| ||| ||||| |||| ||||||||| ||||||| ||||||||||  |||  |||||||||||||||||||| ||||  || ||||||||||    
T  9353245 cttctctttaagg-ttcattattgagagagtggg-aaacacaaatgggtagaaattagatcttgttcttgtgtaagcttgcaagc--ttttttcttgtaa 9353340  T
Q  200 ccctttgtaa 209  Q
    | ||||||||    
T  9353341 ctctttgtaa 9353350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 107 - 209
Target Start/End: Original strand, 1457067 - 1457169
Alignment:
Q  107 ttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgt-aagcttgaaagctattgtttcttgtaacccttt 205  Q
    ||||||||||||||||||||||||||||||||||  | ||||||||||||||| |||||| ||||| ||||||||| ||||  | ||||||||||| |||    
T  1457067 ttttagggttcatattgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag-ttcttgtaacctttt 1457165  T
Q  206 gtaa 209  Q
    ||||    
T  1457166 gtaa 1457169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 1457014 - 1457067
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggt 54  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  1457014 gtctttgttgagagtgtctcttgggttgggaaaaacattgtaatcaccttgggt 1457067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 27445203 - 27445150
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggt 54  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  27445203 gtctttgttgagagtgtctcttgggttgggaaaaacattgtaatcaccttgggt 27445150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 27450047 - 27449994
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggt 54  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  27450047 gtctttgttgagagtgtctcttgggttgggaaaaacattgtaatcaccttgggt 27449994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 43592512 - 43592459
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggt 54  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  43592512 gtctttgttgagagtgtctcttgggttgggaaaaacattgtaatcaccttgggt 43592459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 43598957 - 43598904
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggt 54  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  43598957 gtctttgttgagagtgtctcttgggttgggaaaaacattgtaatcaccttgggt 43598904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 43604449 - 43604396
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggt 54  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  43604449 gtctttgttgagagtgtctcttgggttgggaaaaacattgtaatcaccttgggt 43604396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 43609941 - 43609888
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggt 54  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  43609941 gtctttgttgagagtgtctcttgggttgggaaaaacattgtaatcaccttgggt 43609888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 2 - 205
Target Start/End: Original strand, 11916790 - 11916985
Alignment:
Q  2 tctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtgtc 101  Q
    ||||||||| |||  |||||||||||||||||  |||||||| ||||||||||||||| || ||||  | ||||||||||  ||| |||||| | ||||     
T  11916790 tctttgtagtgaggatctcttgggttgggaaa--cattgtaaacaccttgggtagtga-gatttcacca-ttggaaggatcaaaaacttccttttgtgtt 11916885  T
Q  102 ttctcttttagggttcatattgtgagagtggg-gaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaagctattgtttcttgtaac 200  Q
    |||||  |||||||||||  | |||||||||| || ||| | ||||||||||  |||| |||||||||||||||||||| || ||||  |||||||||||    
T  11916886 ttctc--ttagggttcatcgtttgagagtgggtgacaca-aaatgggtagaaattaggtcttgttcttgtgtaagcttgcaaactat--tttcttgtaac 11916980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 107 - 209
Target Start/End: Complemental strand, 27445150 - 27445048
Alignment:
Q  107 ttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgt-aagcttgaaagctattgtttcttgtaacccttt 205  Q
    ||||||||||||||||  ||||||||||||||||  | ||||||||||||||| |||||| ||||| ||||||||| ||||  | ||||||||||| |||    
T  27445150 ttttagggttcatattaagagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag-ttcttgtaacctttt 27445052  T
Q  206 gtaa 209  Q
    ||||    
T  27445051 gtaa 27445048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 107 - 209
Target Start/End: Complemental strand, 27449994 - 27449892
Alignment:
Q  107 ttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgt-aagcttgaaagctattgtttcttgtaacccttt 205  Q
    ||||||||||||||||  ||||||||||||||||  | ||||||||||||||| |||||| ||||| ||||||||| ||||  | ||||||||||| |||    
T  27449994 ttttagggttcatattaagagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag-ttcttgtaacctttt 27449896  T
Q  206 gtaa 209  Q
    ||||    
T  27449895 gtaa 27449892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 107 - 209
Target Start/End: Complemental strand, 43592459 - 43592357
Alignment:
Q  107 ttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgt-aagcttgaaagctattgtttcttgtaacccttt 205  Q
    ||||||||||||||||  ||||||||||||||||  | ||||||||||||||| |||||| ||||| ||||||||| ||||  | ||||||||||| |||    
T  43592459 ttttagggttcatattaagagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag-ttcttgtaacctttt 43592361  T
Q  206 gtaa 209  Q
    ||||    
T  43592360 gtaa 43592357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 107 - 209
Target Start/End: Complemental strand, 43598904 - 43598802
Alignment:
Q  107 ttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgt-aagcttgaaagctattgtttcttgtaacccttt 205  Q
    ||||||||||||||||  ||||||||||||||||  | ||||||||||||||| |||||| ||||| ||||||||| ||||  | ||||||||||| |||    
T  43598904 ttttagggttcatattaagagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag-ttcttgtaacctttt 43598806  T
Q  206 gtaa 209  Q
    ||||    
T  43598805 gtaa 43598802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 107 - 209
Target Start/End: Complemental strand, 43604396 - 43604294
Alignment:
Q  107 ttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgt-aagcttgaaagctattgtttcttgtaacccttt 205  Q
    ||||||||||||||||  ||||||||||||||||  | ||||||||||||||| |||||| ||||| ||||||||| ||||  | ||||||||||| |||    
T  43604396 ttttagggttcatattaagagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag-ttcttgtaacctttt 43604298  T
Q  206 gtaa 209  Q
    ||||    
T  43604297 gtaa 43604294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 107 - 209
Target Start/End: Complemental strand, 43609888 - 43609786
Alignment:
Q  107 ttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgt-aagcttgaaagctattgtttcttgtaacccttt 205  Q
    ||||||||||||||||  ||||||||||||||||  | ||||||||||||||| |||||| ||||| ||||||||| ||||  | ||||||||||| |||    
T  43609888 ttttagggttcatattaagagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag-ttcttgtaacctttt 43609790  T
Q  206 gtaa 209  Q
    ||||    
T  43609789 gtaa 43609786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 15044919 - 15044865
Alignment:
Q  1 gtctttgtagagagtgtctcttgggtt-gggaaaaacattgtaatcaccttgggt 54  Q
    |||||||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  15044919 gtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggt 15044865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 107 - 186
Target Start/End: Complemental strand, 15044865 - 15044785
Alignment:
Q  107 ttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgt-aagcttgaaagcta 186  Q
    |||||||||||||| |||||||||||| ||| ||  | ||||||||||||||| |||||| ||||| ||||||||||||||    
T  15044865 ttttagggttcatagtgtgagagtgggaaaataccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaagcta 15044785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 17 - 178
Target Start/End: Original strand, 12084010 - 12084164
Alignment:
Q  17 tctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtgtcttctcttttagggtt 116  Q
    ||||||||||||| |||  |||| ||| |||||||||||||||| | ||||  | ||||||||||  |||||||||| | |||| || ||||  ||| ||    
T  12084010 tctcttgggttggtaaa--cattttaaacaccttgggtagtgagaa-ttcaccatttggaaggata-aaagcttccttttgtgttttttctt--aggatt 12084103  T
Q  117 catattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgtaagctt 178  Q
    |||||||||||||||||  | |||| ||||||||||  |||| |||||||||||||||||||    
T  12084104 catattgtgagagtgggtga-cacaaatgggtagaaattaggtcttgttcttgtgtaagctt 12084164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 17003776 - 17003949
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggat-ttaaagcttcctctagtg 99  Q
    |||||||||| |||  ||||||||||| |||||  |||||||| ||||||||||||||| || ||||  | ||||||||||   |||||||||| | |||    
T  17003776 gtctttgtagtgaggttctcttgggtttggaaa--cattgtaaacaccttgggtagtga-gatttcacca-ttggaaggatcaaaaagcttccttttgtg 17003871  T
Q  100 tcttctcttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgtaagcttg 179  Q
    | |||||  ||||| ||||||||||||||||| |  ||   | ||||||||||  |||| ||||||||||||||||||||    
T  17003872 ttttctc--ttaggattcatattgtgagagtgagtgaaattaaatgggtagaaattaggtcttgttcttgtgtaagcttg 17003949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 28807436 - 28807479
Alignment:
Q  10 gagagtgtctcttgggttgggaaaaacattgtaatcaccttggg 53  Q
    |||||||| |||| ||||||||||||||||||||||||||||||    
T  28807436 gagagtgtttcttaggttgggaaaaacattgtaatcaccttggg 28807479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 186
Target Start/End: Complemental strand, 10282002 - 10281852
Alignment:
Q  33 aaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaa-gcttcctctagtgtcttctcttttagggttcatattgtgagagtg 131  Q
    ||||||||||| |||||||||||||||| | ||||  | ||||||||||  ||| |||| || | |||| |||||||  ||| ||||||||||||| |||    
T  10282002 aaacattgtaaacaccttgggtagtgag-atttcacca-ttggaaggatcaaaaagctttcttttgtgttttctctt--aggattcatattgtgagtgtg 10281907  T
Q  132 gg-gaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaagcta 186  Q
    || || ||| | ||||||||||  |||| |||||||||||||||||||| ||||||    
T  10281906 ggtgacacaaa-atgggtagaaattaggtcttgttcttgtgtaagcttgtaagcta 10281852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 24553344 - 24553401
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgag 60  Q
    |||||||||| |||  |||||||||||||||||  |||||||| ||||||||||||||||    
T  24553344 gtctttgtagtgaggttctcttgggttgggaaa--cattgtaaacaccttgggtagtgag 24553401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 28832537 - 28832480
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgag 60  Q
    |||||||||| |||  |||||||||||||||||  |||||||| ||||||||||||||||    
T  28832537 gtctttgtagtgaggttctcttgggttgggaaa--cattgtaaacaccttgggtagtgag 28832480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 11181649 - 11181705
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtga 59  Q
    |||||||||| |||  |||||||||||||||||  |||||||| |||||||||||||||    
T  11181649 gtctttgtagtgaggttctcttgggttgggaaa--cattgtaaacaccttgggtagtga 11181705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 209
Target Start/End: Original strand, 28807485 - 28807580
Alignment:
Q  112 gggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgt-aagcttgaaagctattgtttcttgtaaccctttgtaa 209  Q
    ||||||||| |||||||||||| ||| ||  | |||||| |||||||| |||||| ||||| ||||||||||||||  | ||||||||||| |||||||    
T  28807485 gggttcatagtgtgagagtgggaaaataccaaagggtag-atctagggtttgttcatgtgtaaagcttgaaagcta--gattcttgtaaccttttgtaa 28807580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 3880476 - 3880407
Alignment:
Q  110 tagggttcatattgtgagagtggg-gaaacacatatgggtagaatctagggcttgttcttgtgtaagcttg 179  Q
    |||| ||||||||||||||||||| || ||| | ||||||||||  |||| ||||||||||||||||||||    
T  3880476 taggattcatattgtgagagtgggtgacacaaa-atgggtagaaattaggtcttgttcttgtgtaagcttg 3880407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 31300412 - 31300469
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgag 60  Q
    |||||||||| |||  |||||||||||| ||||  |||||||| ||||||||||||||||    
T  31300412 gtctttgtagtgaggttctcttgggttgagaaa--cattgtaaacaccttgggtagtgag 31300469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 17765 - 17970
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtgt 100  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| | ||||  | |||||||||| ||||||||||||| ||||    
T  17765 gtctttgtagagaggatctcttgggttgggaaaaacattgtaatcaccttgggtagtgag-atttcacca-ttggaaggatctaaagcttcctcttgtgt 17862  T
Q  101 cttctcttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaagctattgtttcttgtaac 200  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| | |||||||||||||||||||| |||||||| |||||||||||    
T  17863 cttctcttttagggttcatattgtgagagtggggaaacacaaatgggtagaaactatgacttgttcttgtgtaagcttgcaagctatt-tttcttgtaac 17961  T
Q  201 cctttgtaa 209  Q
    |||||||||    
T  17962 cctttgtaa 17970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 23858 - 24063
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtgt 100  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| | ||||  | |||||||||| ||||||||||||| ||||    
T  23858 gtctttgtagagaggatctcttgggttgggaaaaacattgtaatcaccttgggtagtgag-atttcacca-ttggaaggatctaaagcttcctcttgtgt 23955  T
Q  101 cttctcttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaagctattgtttcttgtaac 200  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| | |||||||||||||||||||| |||||||| |||||||||||    
T  23956 cttctcttttagggttcatattgtgagagtggggaaacacaaatgggtagaaactatgacttgttcttgtgtaagcttgcaagctatt-tttcttgtaac 24054  T
Q  201 cctttgtaa 209  Q
    |||||||||    
T  24055 cctttgtaa 24063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 8234 - 8437
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtgt 100  Q
    |||||||||| |||  |||||||||||||||||  |||||||| |||||||||||||||| | ||||  | ||||||||||| |||||||||| | ||||    
T  8234 gtctttgtagtgaggatctcttgggttgggaaa--cattgtaaacaccttgggtagtgag-atttcacca-ttggaaggattaaaagcttccttttgtgt 8329  T
Q  101 cttctcttttagggttca-tattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaagctattgtttcttgtaa 199  Q
    |||||||||||||||||| ||||| |||||| |||||||||| ||  ||||||  |||| |||||||||||||||||||| |||||||| ||||||||||    
T  8330 cttctcttttagggttcattattgagagagt-gggaaacacaaatacgtagaaattaggtcttgttcttgtgtaagcttgcaagctatt-tttcttgtaa 8427  T
Q  200 ccctttgtaa 209  Q
    | ||||||||    
T  8428 ctctttgtaa 8437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 2 - 209
Target Start/End: Original strand, 133097 - 133298
Alignment:
Q  2 tctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtgtc 101  Q
    ||||||||| |||  |||||||||||||||||  |||||||| |||||||||||||||| | ||||  | ||||||||||  |||||||||| | |||||    
T  133097 tctttgtagtgaggatctcttgggttgggaaa--cattgtaaacaccttgggtagtgag-atttcacca-ttggaaggatcaaaagcttccttttgtgtc 133192  T
Q  102 ttctcttttagggttcat-attgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaagctattgtttcttgtaac 200  Q
    |||||||| ||||||||| |||| ||||||||| ||||||| ||||||||||  |||| |||||||||||||||| ||| |||||||| |||||||||||    
T  133193 ttctcttt-agggttcattattgagagagtggg-aaacacaaatgggtagaaattaggtcttgttcttgtgtaagtttgcaagctatt-tttcttgtaac 133289  T
Q  201 cctttgtaa 209  Q
     ||||||||    
T  133290 tctttgtaa 133298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 5965 - 5908
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgag 60  Q
    |||||||||| |||  ||||||||||||| |||  |||||||| ||||||||||||||||    
T  5965 gtctttgtagtgaggatctcttgggttggcaaa--cattgtaaacaccttgggtagtgag 5908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 36649 - 36850
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtgt 100  Q
    |||||||||| |||  |||||||||||||  |||||||||||| |||||||||||||||| | ||||  | ||||||||||  |||||||||| | ||||    
T  36649 gtctttgtagtgaggatctcttgggttgg--aaaacattgtaaacaccttgggtagtgag-atttcacca-ttggaaggatcaaaagcttccttttgtgt 36744  T
Q  101 cttctcttttagggttcat-attgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaagctattgtttcttgtaa 199  Q
    ||||||||| ||||||||| |||| ||||||||| ||||||| ||||||||||   | | |||||||||||||||||||| |||||||  ||||||||||    
T  36745 cttctcttt-agggttcattattgagagagtggg-aaacacaaatgggtagaaatcatgtcttgttcttgtgtaagcttgcaagctat--tttcttgtaa 36840  T
Q  200 ccctttgtaa 209  Q
    | ||||||||    
T  36841 ctctttgtaa 36850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 43778 - 43979
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtgt 100  Q
    |||||||||| |||  ||| |||||||||||||  |||||||| |||||||||||||||| | ||||  | ||||||||||  |||||||||| | ||||    
T  43778 gtctttgtagtgaggatcttttgggttgggaaa--cattgtaaacaccttgggtagtgag-atttcacca-ttggaaggatcaaaagcttccttttgtgt 43873  T
Q  101 cttctcttttagggttcat-attgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaagctattgtttcttgtaa 199  Q
    ||||||||| ||||||||| |||| ||||| | |||| |||| ||||||||||  |||| ||||||||||| |||||||| |||||||  ||||||||||    
T  43874 cttctcttt-agggttcattattgagagagagtggaa-cacaaatgggtagaaattaggtcttgttcttgtataagcttgcaagctat--tttcttgtaa 43969  T
Q  200 ccctttgtaa 209  Q
    | ||||||||    
T  43970 ctctttgtaa 43979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0355 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 4)
Name: scaffold0355
Description:

Target: scaffold0355; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 3701 - 3754
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggt 54  Q
    |||||||| ||||||||||||| |||| ||||||||||||||||||||||||||    
T  3701 gtctttgttgagagtgtctcttaggttaggaaaaacattgtaatcaccttgggt 3754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0355; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 54
Target Start/End: Original strand, 9514 - 9549
Alignment:
Q  19 tcttgggttgggaaaaacattgtaatcaccttgggt 54  Q
    |||| |||||||||||||||||||||||||||||||    
T  9514 tcttaggttgggaaaaacattgtaatcaccttgggt 9549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0355; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 186
Target Start/End: Original strand, 3754 - 3833
Alignment:
Q  107 ttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgt-aagcttgaaagcta 186  Q
    |||||||||||||| |||||||||||| ||| ||  | |||||| |||||||| |||||| ||||| ||||||||| ||||    
T  3754 ttttagggttcatagtgtgagagtgggaaaataccaaagggtag-atctagggtttgttcatgtgtaaagcttgaaggcta 3833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0355; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 186
Target Start/End: Original strand, 9549 - 9628
Alignment:
Q  107 ttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgt-aagcttgaaagcta 186  Q
    |||||||||||||| |||||||||||| ||| ||  | |||||| |||||||| |||||| ||||| ||||||||| ||||    
T  9549 ttttagggttcatagtgtgagagtgggaaaataccaaagggtag-atctagggtttgttcatgtgtaaagcttgaaggcta 9628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 34914 - 34967
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggt 54  Q
    |||||||| |||||||||||||||||| || |||||||||||||||||||||||    
T  34914 gtctttgttgagagtgtctcttgggtttgggaaaacattgtaatcaccttgggt 34967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 107 - 186
Target Start/End: Original strand, 34967 - 35047
Alignment:
Q  107 ttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgt-aagcttgaaagcta 186  Q
    |||||||||||||| |||||||||||||||||||  | ||||||| ||||||| |||||| ||||| ||||||||| ||||    
T  34967 ttttagggttcatagtgtgagagtggggaaacaccaaagggtagagtctagggtttgttcatgtgtaaagcttgaaggcta 35047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 85963 - 85762
Alignment:
Q  1 gtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatttaaagcttcctctagtgt 100  Q
    |||||||||| |||  ||||||||||||||  ||||||||||| ||| ||||||||||| || ||||  | ||||||||||  ||| |||||| | ||||    
T  85963 gtctttgtagtgaggatctcttgggttggg--aaacattgtaaacactttgggtagtga-gatttcacca-ttggaaggatcaaaaacttccttttgtgt 85868  T
Q  101 cttctcttttagggttcatattgtgagagtggg-gaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaagctattgtttcttgtaa 199  Q
     || ||| ||||  ||||||||||| ||||||| || ||| | ||||||||||  |||| |||| ||||||||||||||  ||||||   ||||||||||    
T  85867 -ttttctcttagaattcatattgtgggagtgggagacaca-aaatgggtagaaattaggtcttgctcttgtgtaagcttttaagcta--atttcttgtaa 85772  T
Q  200 ccctttgtaa 209  Q
    | ||||||||    
T  85771 ctctttgtaa 85762  T

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Target: scaffold0464 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 585 - 542
Alignment:
Q  10 gagagtgtctcttgggttgggaaaaacattgtaatcaccttggg 53  Q
    ||||| || |||| ||||||||||||||||||||||||||||||    
T  585 gagagagtttcttaggttgggaaaaacattgtaatcaccttggg 542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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