View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21151_high_5 (Length: 461)
Name: NF21151_high_5
Description: NF21151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21151_high_5 |
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| [»] chr1 (4 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 424; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 18 - 461
Target Start/End: Complemental strand, 1855855 - 1855412
Alignment:
| Q |
18 |
ataatctgaatctttatcaacacattcgctattttccttgcaggcatagctatttgtagtttgggctatttgacatgattcatttgtaacaacccaatta |
117 |
Q |
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| T |
1855855 |
ataatctgaatctttatcaacacattcactattttccttgcaggcatagctatttgtagtttgggctattcgacatgattcatttgtaacaacccaatta |
1855756 |
T |
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| Q |
118 |
acaaccatagggaaagtgttataaggcagtttcttgatatgttctacagaaaaattataggatccttgttttgcaataaaggaatagctacaagaatttt |
217 |
Q |
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| T |
1855755 |
acaaccatagggaaagtgttataaggcagtttcttaatatgttctacagaaaaattataggatccttgttttgcaataaaggaatagctacaagaatttt |
1855656 |
T |
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| Q |
218 |
ccatagatagtgtagaaggtgagaatttaaatgcttctatggtgatatttttcataagtggaggaatatcaacttcacaacaacctaaacctgtgcactt |
317 |
Q |
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| T |
1855655 |
ccatagatagtgtagaaggtgagaatttaaatgcttgtatggtgatatttttcataagtggaggaatatcaacttcacaacaacctaaacctgtgcactt |
1855556 |
T |
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| Q |
318 |
tccagtgttatttccaattaccattttagtatcaaaatcataacatcttgttaagcatcctgtagaataagtggcacccttgaaattactgttgagatat |
417 |
Q |
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| T |
1855555 |
tccagtgttatttccaattaccattttagtatcaaaatcataacatcttgttaagcatcctgtagaataagtggcacccttgaaattactgttgagatat |
1855456 |
T |
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| Q |
418 |
ccgtaactgtcacaaccaactgttatgaatttgttgtctgtgct |
461 |
Q |
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| T |
1855455 |
ccgaaactgtcacaaccaactgttatgaatttgttgtctgtgct |
1855412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 18 - 452
Target Start/End: Original strand, 1817336 - 1817770
Alignment:
| Q |
18 |
ataatctgaatctttatcaacacattcgctattttccttgcaggcatagctatttgtagtttgggctatttgacatgattcatttgtaacaacccaatta |
117 |
Q |
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| T |
1817336 |
ataatctggatcgtcatcgacacattcactatttttcttgcaggcgtagctatttgtagtgtgagctatttgacatgattcatttgtaatagcccaatta |
1817435 |
T |
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| Q |
118 |
acaaccatagggaaagtgttataaggcagtttcttgatatgttctacagaaaaattataggatccttgttttgcaataaaggaatagctacaagaatttt |
217 |
Q |
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| T |
1817436 |
ataaccaaggggaaagtttcattaggtagattatttatatggtctacagaaaatttataggatccttgttttgcaataaaggaatagctacaagaatttt |
1817535 |
T |
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| Q |
218 |
ccatagatagtgtagaaggtgagaatttaaatgcttctatggtgatatttttcataagtggaggaatatcaacttcacaacaacctaaacctgtgcactt |
317 |
Q |
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| T |
1817536 |
ccttagatagggtagaagttgggaatttaaatgcttcaattgtgatatttttcatactagaaggaatatccacttggcaacaccctaaacctgtgcattt |
1817635 |
T |
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| Q |
318 |
tccagtgttatttccaattaccattttagtatcaaaatcataacatcttgttaagcatcctgtagaataagtggcacccttgaaattactgttgagatat |
417 |
Q |
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| T |
1817636 |
tccagtgttattcccaattactattttaggtttaaaatcataacatcttgttaagcaccctgttgaataagtgccacctgtgaaattactgttgagatat |
1817735 |
T |
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| Q |
418 |
ccgtaactgtcacaaccaactgttatgaatttgtt |
452 |
Q |
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| T |
1817736 |
ccgtaactgtcgcaaccaacggttatgaatttgtt |
1817770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 356 - 461
Target Start/End: Original strand, 9220511 - 9220616
Alignment:
| Q |
356 |
cataacatcttgttaagcatcctgtagaataagtggcacccttgaaattactgttgagatatccgtaactgtcacaaccaactgttatgaatttgttgtc |
455 |
Q |
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| T |
9220511 |
cataacatcttgttaagcaaccggttgaatatgtttcttcgttgtaaatactgttgagataaccgtaactgtcacaaccaaccgttatgaacttgttttc |
9220610 |
T |
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| Q |
456 |
tgtgct |
461 |
Q |
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| T |
9220611 |
agtgct |
9220616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 405 - 452
Target Start/End: Original strand, 9158110 - 9158157
Alignment:
| Q |
405 |
actgttgagatatccgtaactgtcacaaccaactgttatgaatttgtt |
452 |
Q |
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| T |
9158110 |
actgttgagataaccgtaactgtcacaaccaaccgttacgaacttgtt |
9158157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 155; Significance: 4e-82; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 183 - 461
Target Start/End: Complemental strand, 37567171 - 37566880
Alignment:
| Q |
183 |
ttgttttgcaataaaggaatagctacaagaattttccatagatagtgtagaaggtgagaatttaaatgcttctatggtgatatttttcataagtggagga |
282 |
Q |
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| T |
37567171 |
ttgttttgcaataaaggaatagctacaagaattttccatagacagtgtagaagttgggaatttaaatgtttcaattgtgatatttttcatactagaagga |
37567072 |
T |
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| Q |
283 |
atatcaacttcacaacaacctaaacct------gtgcactttccagtgttatttccaattaccattttagtatcaaaatcataacatcttgttaa----- |
371 |
Q |
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| T |
37567071 |
atatccacttggcaacaccctaaacctaggcctgtgcattttccagtgttattcccagttaccattttaggatcaaaatcataacatcttgttaactgtt |
37566972 |
T |
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| Q |
372 |
--gcatcctgtagaataagtggcacccttgaaattactgttgagatatccgtaactgtcacaaccaactgttatgaatttgttgtctgtgct |
461 |
Q |
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| T |
37566971 |
aagcatcctgtagaataagtggcacccttgaaattactgttgagatatccgtaactgtcgcaaccaacggttatgaatttgttttccgtgct |
37566880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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