View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21151_low_12 (Length: 325)

Name: NF21151_low_12
Description: NF21151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21151_low_12
NF21151_low_12
[»] chr6 (58 HSPs)
chr6 (1-305)||(26811542-26811846)
chr6 (92-316)||(26617746-26617970)
chr6 (92-316)||(26723674-26723898)
chr6 (52-302)||(26949745-26949995)
chr6 (10-298)||(27214459-27214750)
chr6 (10-298)||(27234478-27234769)
chr6 (9-302)||(26848701-26848994)
chr6 (7-302)||(25071698-25071993)
chr6 (49-298)||(25579800-25580049)
chr6 (49-298)||(26142946-26143195)
chr6 (7-98)||(27665174-27665265)
chr6 (49-298)||(25538621-25538870)
chr6 (52-170)||(28181198-28181316)
chr6 (1-302)||(26635723-26636024)
chr6 (1-302)||(26741689-26741990)
chr6 (217-302)||(26959415-26959500)
chr6 (1-302)||(26975085-26975386)
chr6 (49-284)||(27337936-27338171)
chr6 (49-284)||(27398676-27398911)
chr6 (49-298)||(26056007-26056256)
chr6 (49-298)||(26075977-26076226)
chr6 (52-302)||(28185450-28185700)
chr6 (52-302)||(28297566-28297816)
chr6 (52-302)||(28514257-28514507)
chr6 (52-170)||(28227034-28227152)
chr6 (40-144)||(2184360-2184464)
chr6 (52-259)||(28242888-28243095)
chr6 (52-170)||(28234648-28234765)
chr6 (52-170)||(28325565-28325683)
chr6 (49-153)||(27677616-27677720)
chr6 (49-153)||(27679027-27679131)
chr6 (40-227)||(28098297-28098484)
chr6 (40-97)||(2184970-2185027)
chr6 (49-170)||(26048926-26049047)
chr6 (49-170)||(26070095-26070216)
chr6 (7-98)||(26959205-26959296)
chr6 (8-90)||(26617359-26617441)
chr6 (60-170)||(26623068-26623178)
chr6 (49-298)||(26656070-26656319)
chr6 (8-90)||(26723287-26723369)
chr6 (60-170)||(26729046-26729156)
chr6 (49-298)||(26762041-26762290)
chr6 (49-171)||(26823921-26824043)
chr6 (232-302)||(26937370-26937440)
chr6 (213-259)||(28234808-28234854)
chr6 (36-192)||(26937162-26937318)
chr6 (49-249)||(27718285-27718485)
chr6 (212-267)||(24715829-24715884)
chr6 (40-115)||(26341974-26342049)
chr6 (212-298)||(25481986-25482072)
chr6 (59-137)||(27706420-27706498)
chr6 (116-174)||(29826175-29826233)
chr6 (49-114)||(28150018-28150083)
chr6 (49-117)||(25481823-25481891)
chr6 (49-249)||(27610908-27611108)
chr6 (217-273)||(27664999-27665055)
chr6 (207-259)||(28181353-28181405)
chr6 (207-259)||(28227189-28227241)
[»] chr2 (2 HSPs)
chr2 (1-302)||(17993537-17993838)
chr2 (134-174)||(3279857-3279897)
[»] scaffold0038 (6 HSPs)
scaffold0038 (52-170)||(34809-34927)
scaffold0038 (52-170)||(27532-27650)
scaffold0038 (52-259)||(43050-43257)
scaffold0038 (52-170)||(116880-116998)
scaffold0038 (213-259)||(34970-35016)
scaffold0038 (207-259)||(27687-27739)
[»] chr4 (10 HSPs)
chr4 (50-210)||(5090899-5091059)
chr4 (49-170)||(18655449-18655570)
chr4 (49-170)||(18679539-18679660)
chr4 (214-299)||(18699243-18699328)
chr4 (214-258)||(18655361-18655405)
chr4 (214-258)||(18723969-18724013)
chr4 (214-258)||(18731388-18731432)
chr4 (214-299)||(18679410-18679495)
chr4 (49-170)||(18699372-18699493)
chr4 (49-170)||(18731476-18731597)
[»] scaffold0019 (1 HSPs)
scaffold0019 (49-267)||(58170-58388)
[»] chr1 (3 HSPs)
chr1 (49-258)||(268241-268450)
chr1 (211-298)||(28127523-28127610)
chr1 (211-298)||(28164207-28164294)
[»] chr8 (2 HSPs)
chr8 (49-258)||(29273667-29273876)
chr8 (10-87)||(31903893-31903970)
[»] scaffold0349 (1 HSPs)
scaffold0349 (59-153)||(3423-3517)


Alignment Details
Target: chr6 (Bit Score: 161; Significance: 8e-86; HSPs: 58)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 26811542 - 26811846
Alignment:
Q  1 ctcaaaagcattgaagactccaggattgcagttattgtattctcaaagaactatgctacttcttcattttgtctagatgaacttgtccatatcattcact 100  Q
    ||||| ||||||||| |||| ||||||||  |||||||||||||  |||||||||| ||||| || |||||| ||||||| |||||||| |||||| |||    
T  26811542 ctcaagagcattgaacactctaggattgccattattgtattctctgagaactatgcaacttcgtcgttttgtttagatgagcttgtccacatcattaact 26811641  T
Q  101 acttcaaggaaaagagtcgtctcgttcttccagttttctatgatgtggaaccttctcacgtacgacatcagactaataggtatggtgcagcactttctga 200  Q
    |||||||||||||  |||| || ||||| ||||||||||||| |||||||||||||||||| |||||||| | ||| | |||||||| ||||||| ||||    
T  26811642 acttcaaggaaaaaggtcgccttgttctaccagttttctatggtgtggaaccttctcacgtgcgacatcaaaataacaagtatggtgaagcacttactga 26811741  T
Q  201 gtttgaagaaaggttccaaaataacaagaaaaacatggagcggttgcagaaatggaagacagctctttaccaagctgcgaacttatctggctatcatttc 300  Q
    ||||||||||| |||||||||||||||| |||||||||| ||||||||||||||||||| ||||||| |||||| ||  ||||||||||||| |||||||    
T  26811742 gtttgaagaaatgttccaaaataacaaggaaaacatggatcggttgcagaaatggaagatagctcttaaccaagttggtaacttatctggctttcatttc 26811841  T
Q  301 aagta 305  Q
    |||||    
T  26811842 aagta 26811846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 92 - 316
Target Start/End: Original strand, 26617746 - 26617970
Alignment:
Q  92 tcattcactacttcaaggaaaagagtcgtctcgttcttccagttttctatgatgtggaaccttctcacgtacgacatcagactaataggtatggtgcagc 191  Q
    ||||||||||||| |||||||| ||||| || ||||||||||||||||||||||||||||||||| | ||||||||| | | ||| |||||||||| |||    
T  26617746 tcattcactacttaaaggaaaatagtcgccttgttcttccagttttctatgatgtggaaccttctgaagtacgacattacaataacaggtatggtgaagc 26617845  T
Q  192 actttctgagtttgaagaaaggttccaaaataacaagaaaaacatggagcggttgcagaaatggaagacagctctttaccaagctgcgaacttatctggc 291  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||   ||||||||||||    
T  26617846 acttactgagtttgaagaaaggttccaaaataacaaggaaaacatggagcggttgcagaaatggaagatagctcttaaccaagcttataacttatctggc 26617945  T
Q  292 tatcatttcaagtacgcttcttcat 316  Q
    |||||||||||| || |||||||||    
T  26617946 tatcatttcaagcacacttcttcat 26617970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 92 - 316
Target Start/End: Original strand, 26723674 - 26723898
Alignment:
Q  92 tcattcactacttcaaggaaaagagtcgtctcgttcttccagttttctatgatgtggaaccttctcacgtacgacatcagactaataggtatggtgcagc 191  Q
    ||||||||||||| |||||||| ||||| || ||||||||||||||||||||||||||||||||| | ||||||||| | | ||| |||||||||| |||    
T  26723674 tcattcactacttaaaggaaaatagtcgccttgttcttccagttttctatgatgtggaaccttctgaagtacgacattacaataacaggtatggtgaagc 26723773  T
Q  192 actttctgagtttgaagaaaggttccaaaataacaagaaaaacatggagcggttgcagaaatggaagacagctctttaccaagctgcgaacttatctggc 291  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||   ||||||||||||    
T  26723774 acttactgagtttgaagaaaggttccaaaataacaaggaaaacatggagcggttgcagaaatggaagatagctcttaaccaagcttataacttatctggc 26723873  T
Q  292 tatcatttcaagtacgcttcttcat 316  Q
    |||||||||||| || |||||||||    
T  26723874 tatcatttcaagcacacttcttcat 26723898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 52 - 302
Target Start/End: Original strand, 26949745 - 26949995
Alignment:
Q  52 tatgctacttcttcattttgtctagatgaacttgtccatatcattcactacttcaaggaaaagagtcgtctcgttcttccagttttctatgatgtggaac 151  Q
    |||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||||  |||| || ||||| ||||||||||||||||| ||||    
T  26949745 tatgcttcttcttcattttgtttagacgaacttgtccatatcattcactacttcaaggaaaaaggtcgccttgttctgccagttttctatgatgtagaac 26949844  T
Q  152 cttctcacgtacgacatcagactaataggtatggtgcagcactttctgagtttgaagaaaggttccaaaataacaagaaaaacatggagcggttgcagaa 251  Q
    |||||||||| |||||||||| | |||| ||||||| ||||||| || ||  |||||| ||||||||||| | ||| ||||||||||||||||||| |||    
T  26949845 cttctcacgtgcgacatcagaattatagttatggtgaagcacttgctaagcatgaagagaggttccaaaagagcaaaaaaaacatggagcggttgctgaa 26949944  T
Q  252 atggaagacagctctttaccaagctgcgaacttatctggctatcatttcaa 302  Q
    |||||||| ||||||  || ||| |||  ||||||||||||| ||||||||    
T  26949945 atggaagatagctctgaacaaagttgctgacttatctggctaccatttcaa 26949995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 10 - 298
Target Start/End: Original strand, 27214459 - 27214750
Alignment:
Q  10 attgaagactccaggattgcagttattgtattctcaaagaactatgctacttcttcattttgtctagatgaacttgtccatatcattcactacttcaagg 109  Q
    ||||||||||| |||||| | ||||||||||||||| |||||||||||||||||||||||||| | || ||||||||||| |||| ||| | || |||||    
T  27214459 attgaagactcgaggatttctgttattgtattctcagagaactatgctacttcttcattttgtttggacgaacttgtccacatcactcattgctccaagg 27214558  T
Q  110 aaaagagtcgtctcgttcttccagttttctatgatgtggaaccttctcacgtacgacatcagactaata---ggtatggtgcagcactttctgagtttga 206  Q
    ||||  |||| || ||||| || ||||||||||  || |||||||||||| | ||||||| ||  || |   | ||||||| ||| ||| || ||  |||    
T  27214559 aaaaaggtcgccttgttctacctgttttctatggcgttgaaccttctcacttgcgacatctgaacaacaacagttatggtgaagcgcttgctaagcatga 27214658  T
Q  207 agaaaggttccaaaataacaagaaaaacatggagcggttgcagaaatggaagacagctctttaccaagctgcgaacttatctggctatcatt 298  Q
    ||| ||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||    
T  27214659 agagaggtttcaaaataacaaggaaaacatggagcggttgcagaaatggaagatagctcttaaccaagctgctaacttatctggctatcatt 27214750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 10 - 298
Target Start/End: Complemental strand, 27234769 - 27234478
Alignment:
Q  10 attgaagactccaggattgcagttattgtattctcaaagaactatgctacttcttcattttgtctagatgaacttgtccatatcattcactacttcaagg 109  Q
    ||||||||||| |||||| | ||||||||||||||| |||||||||||||||||||||||||| | || ||||||||||| |||| ||| | || |||||    
T  27234769 attgaagactcgaggatttctgttattgtattctcagagaactatgctacttcttcattttgtttggacgaacttgtccacatcactcattgctccaagg 27234670  T
Q  110 aaaagagtcgtctcgttcttccagttttctatgatgtggaaccttctcacgtacgacatcagactaata---ggtatggtgcagcactttctgagtttga 206  Q
    ||||  |||| || ||||| || ||||||||||  || |||||||||||| | ||||||| ||  || |   | ||||||| ||| ||| || ||  |||    
T  27234669 aaaaaggtcgccttgttctacctgttttctatggcgttgaaccttctcacttgcgacatctgaacaacaacagttatggtgaagcgcttgctaagcatga 27234570  T
Q  207 agaaaggttccaaaataacaagaaaaacatggagcggttgcagaaatggaagacagctctttaccaagctgcgaacttatctggctatcatt 298  Q
    ||| ||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||    
T  27234569 agagaggtttcaaaataacaaggaaaacatggagcggttgcagaaatggaagatagctcttaaccaagctgctaacttatctggctatcatt 27234478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 9 - 302
Target Start/End: Original strand, 26848701 - 26848994
Alignment:
Q  9 cattgaagactccaggattgcagttattgtattctcaaagaactatgctacttcttcattttgtctagatgaacttgtccatatcattcactacttcaag 108  Q
    |||||||||||| |||||| |  || ||||||||||  |||||||||| |||||||| |||||| | || ||||||||||| |||||||| | || ||||    
T  26848701 cattgaagactcgaggatttccattcttgtattctctgagaactatgccacttcttcgttttgtttggacgaacttgtccacatcattcattgctccaag 26848800  T
Q  109 gaaaagagtcgtctcgttcttccagttttctatgatgtggaaccttctcacgtacgacatcagactaataggtatggtgcagcactttctgagtttgaag 208  Q
    |||||| || |  | ||| |||| ||||||||||   | ||||||||||| || |||||||||| || ||| ||||||| ||||||| || ||  |||||    
T  26848801 gaaaagggtagcatggttattcctgttttctatggcatagaaccttctcatgtgcgacatcagaatagtagttatggtgaagcacttgctaagcatgaag 26848900  T
Q  209 aaaggttccaaaataacaagaaaaacatggagcggttgcagaaatggaagacagctctttaccaagctgcgaacttatctggctatcatttcaa 302  Q
    |   ||| |||||||||||| ||| ||||||||| ||||  |||||||||| ||||||| |||| ||||| |||||||||||| | ||||||||    
T  26848901 aggtgtttcaaaataacaaggaaagcatggagcgtttgcgtaaatggaagaaagctcttaaccatgctgctaacttatctggccaccatttcaa 26848994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 7 - 302
Target Start/End: Original strand, 25071698 - 25071993
Alignment:
Q  7 agcattgaagactccaggattgcagttattgtattctcaaagaactatgctacttcttcattttgtctagatgaacttgtccatatcattcactacttca 106  Q
    ||||||||||| || || |||||  |||| || ||||| ||  |||||||| |||||||||||||| |||| ||||||||||| ||||||||||||||||    
T  25071698 agcattgaagattcgagaattgccattatcgtcttctctaaagactatgcttcttcttcattttgtttagacgaacttgtccacatcattcactacttca 25071797  T
Q  107 aggaaaagagtcgtctcgttcttccagttttctatgatgtggaaccttctcacgtacgacatcagactaataggtatggtgcagcactttctgagtttga 206  Q
    ||||||||||||| || ||||| ||| |||||||||     |||||||| || || ||| | | || | | || ||||||| | || || || ||  |||    
T  25071798 aggaaaagagtcgccttgttctaccaattttctatggcaccgaaccttcgcaggtgcgaaaactgaatgacagttatggtgaatcatttgctaagcatga 25071897  T
Q  207 agaaaggttccaaaataacaagaaaaacatggagcggttgcagaaatggaagacagctctttaccaagctgcgaacttatctggctatcatttcaa 302  Q
    |||  |||| |||||||||||| || ||||||||||||||| || |||||||| ||||||| || ||||||| |||||||||||  ||||||||||    
T  25071898 agaggggtttcaaaataacaaggaacacatggagcggttgctgacatggaagaaagctcttaacgaagctgctaacttatctggacatcatttcaa 25071993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 49 - 298
Target Start/End: Original strand, 25579800 - 25580049
Alignment:
Q  49 aactatgctacttcttcattttgtctagatgaacttgtccatatcattcactacttcaaggaaaagagtcgtctcgttcttccagttttctatgatgtgg 148  Q
    ||||||||  |||||||||||||| | || ||||||||||| |||||||||| || ||||  ||||||| |  | ||  | || ||||||||||||||||    
T  25579800 aactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaagagttgcttagtattgcccgttttctatgatgtgg 25579899  T
Q  149 aaccttctcacgtacgacatcagactaataggtatggtgcagca-ctttctgagtttgaagaaaggttccaaaataacaagaaaaacatggagcggttgc 247  Q
    ||||| ||||| |||||||||||| |   || ||||||| || | ||| || ||  |||||| ||||| ||||||||| |||||||||||||||| ||||    
T  25579900 aacctactcacatacgacatcagagtgggagttatggtg-agtatcttactaagcatgaagagaggtttcaaaataacgagaaaaacatggagcgattgc 25579998  T
Q  248 agaaatggaagacagctctttaccaagctgcgaacttatctggctatcatt 298  Q
       ||||||||| |||||||  ||||||||| ||||| || ||||||||||    
T  25579999 gtcaatggaagatagctcttacccaagctgctaacttgtccggctatcatt 25580049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 49 - 298
Target Start/End: Original strand, 26142946 - 26143195
Alignment:
Q  49 aactatgctacttcttcattttgtctagatgaacttgtccatatcattcactacttcaaggaaaagagtcgtctcgttcttccagttttctatgatgtgg 148  Q
    ||||||||  |||||||||||||| | || ||||||||||| |||||||||| || ||||  ||||||| |  | ||  |||| ||||||||||||||||    
T  26142946 aactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaagagttgcttagtatttcccgttttctatgatgtgg 26143045  T
Q  149 aaccttctcacgtacgacatcagactaataggtatggtgcagca-ctttctgagtttgaagaaaggttccaaaataacaagaaaaacatggagcggttgc 247  Q
    ||||| ||||| ||||| |||||| |   |  ||||||| |||| ||| || ||  |||||| ||||| ||||||||| |||||||||||||||| ||||    
T  26143046 aacctactcacatacgaaatcagagtgggatttatggtg-agcatcttactaagcatgaagagaggtttcaaaataacgagaaaaacatggagcgattgc 26143144  T
Q  248 agaaatggaagacagctctttaccaagctgcgaacttatctggctatcatt 298  Q
       ||||||||| |||||||  ||||||||| ||||| || ||||||||||    
T  26143145 gtcaatggaagatagctcttatccaagctgctaacttgtccggctatcatt 26143195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 7 - 98
Target Start/End: Complemental strand, 27665265 - 27665174
Alignment:
Q  7 agcattgaagactccaggattgcagttattgtattctcaaagaactatgctacttcttcattttgtctagatgaacttgtccatatcattca 98  Q
    ||||||||||| || ||||||||  ||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  27665265 agcattgaagaatcgaggattgccattattatattctctaagaactatgctacttcttcattttgtttagatgaacttgtccacatcattca 27665174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 49 - 298
Target Start/End: Original strand, 25538621 - 25538870
Alignment:
Q  49 aactatgctacttcttcattttgtctagatgaacttgtccatatcattcactacttcaaggaaaagagtcgtctcgttcttccagttttctatgatgtgg 148  Q
    ||||||||  |||||||||||||| | || ||||||||||| |||||||||| || ||||  ||||||| |  | ||  | || ||||||||||||||||    
T  25538621 aactatgcatcttcttcattttgtttggacgaacttgtccagatcattcactgctacaagacaaagagttgcttagtattgcccgttttctatgatgtgg 25538720  T
Q  149 aaccttctcacgtacgacatcagactaataggtatggtgcagcacttt-ctgagtttgaagaaaggttccaaaataacaagaaaaacatggagcggttgc 247  Q
    ||||| ||||  |||||||||||| |   || ||||||| |||| ||| || ||  |||||| ||||| ||||||||  |||||||||||||||| ||||    
T  25538721 aacctactcagttacgacatcagagtgggagttatggtg-agcattttactaagcatgaagagaggtttcaaaataatgagaaaaacatggagcgattgc 25538819  T
Q  248 agaaatggaagacagctctttaccaagctgcgaacttatctggctatcatt 298  Q
       ||||||||| |||||||  ||||||||| ||||| || ||||||||||    
T  25538820 gtcaatggaagatagctcttatccaagctgctaacttgtccggctatcatt 25538870  T

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Target: chr6; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 52 - 170
Target Start/End: Original strand, 28181198 - 28181316
Alignment:
Q  52 tatgctacttcttcattttgtctagatgaacttgtccatatcattcactacttcaaggaaaagagtcgtctcgttcttccagttttctatgatgtggaac 151  Q
    |||||| |||||||||||||  | || ||||||||||| |||||||||| |||||||||||   | ||||| ||| | ||| ||||||||||||||||||    
T  28181198 tatgcttcttcttcattttgcttggacgaacttgtccacatcattcactgcttcaaggaaagcgggcgtctagttttgccaattttctatgatgtggaac 28181297  T
Q  152 cttctcacgtacgacatca 170  Q
    |||||||||| ||||||||    
T  28181298 cttctcacgtgcgacatca 28181316  T

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Target: chr6; HSP #14
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 26635723 - 26636024
Alignment:
Q  1 ctcaaaagcattgaagactccaggattgcagttattgtattctcaaagaactatgctacttcttcattttgtctagatgaacttgtccatatcattcact 100  Q
    ||||| ||||||||||| || ||||||||  |||| || ||||| ||| | |||||| ||||||  |||||| | |||||||||||||| |||||||| |    
T  26635723 ctcaagagcattgaagagtcgaggattgccattatcgttttctctaaggaatatgcttcttctttgttttgtttggatgaacttgtccacatcattcatt 26635822  T
Q  101 acttcaaggaaaagagtcgtctcgttcttccagttttctatgatgtggaaccttctcacgtacgacatcagactaataggtatggtgcagcactttctga 200  Q
     || ||| |||||| || |    ||| |||| ||||||||||     ||||||||||| || ||| | |  | | | || ||||||| ||| ||| || |    
T  26635823 gctccaatgaaaagggtagcaaggttattcctgttttctatggcaccgaaccttctcatgtgcgaaaactaaatgacagttatggtgaagcgcttgctaa 26635922  T
Q  201 gtttgaagaaaggttccaaaataacaagaaaaacatggagcggttgcagaaatggaagacagctctttaccaagctgcgaacttatctggctatcatttc 300  Q
    |  ||||||   ||| ||||||| |||| ||||||||||| |||||| ||||||||||| ||||||| |||||||||| |||||||||||| | ||||||    
T  26635923 gcatgaagatcagtttcaaaatagcaaggaaaacatggagtggttgctgaaatggaagaaagctcttaaccaagctgctaacttatctggccaccatttc 26636022  T
Q  301 aa 302  Q
    ||    
T  26636023 aa 26636024  T

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Target: chr6; HSP #15
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 26741689 - 26741990
Alignment:
Q  1 ctcaaaagcattgaagactccaggattgcagttattgtattctcaaagaactatgctacttcttcattttgtctagatgaacttgtccatatcattcact 100  Q
    ||||| ||||||||||| || ||||||||  |||| || ||||| ||| | |||||| ||||||  |||||| | |||||||||||||| |||||||| |    
T  26741689 ctcaagagcattgaagagtcgaggattgccattatcgttttctctaaggaatatgcttcttctttgttttgtttggatgaacttgtccacatcattcatt 26741788  T
Q  101 acttcaaggaaaagagtcgtctcgttcttccagttttctatgatgtggaaccttctcacgtacgacatcagactaataggtatggtgcagcactttctga 200  Q
     || ||| |||||| || |    ||| |||| ||||||||||     ||||||||||| || ||| | |  | | | || ||||||| ||| ||| || |    
T  26741789 gctccaatgaaaagggtagcaaggttattcctgttttctatggcaccgaaccttctcatgtgcgaaaactaaatgacagttatggtgaagcgcttgctaa 26741888  T
Q  201 gtttgaagaaaggttccaaaataacaagaaaaacatggagcggttgcagaaatggaagacagctctttaccaagctgcgaacttatctggctatcatttc 300  Q
    |  ||||||   ||| ||||||| |||| ||||||||||| |||||| ||||||||||| ||||||| |||||||||| |||||||||||| | ||||||    
T  26741889 gcatgaagatcagtttcaaaatagcaaggaaaacatggagtggttgctgaaatggaagaaagctcttaaccaagctgctaacttatctggccaccatttc 26741988  T
Q  301 aa 302  Q
    ||    
T  26741989 aa 26741990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 217 - 302
Target Start/End: Original strand, 26959415 - 26959500
Alignment:
Q  217 caaaataacaagaaaaacatggagcggttgcagaaatggaagacagctctttaccaagctgcgaacttatctggctatcatttcaa 302  Q
    ||||||| |||| |||||||||||||||||| ||||||||||| ||||||| |||||||||| |||||||||||| | ||||||||    
T  26959415 caaaatagcaaggaaaacatggagcggttgctgaaatggaagaaagctcttaaccaagctgctaacttatctggccaccatttcaa 26959500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 26975085 - 26975386
Alignment:
Q  1 ctcaaaagcattgaagactccaggattgcagttattgtattctcaaagaactatgctacttcttcattttgtctagatgaacttgtccatatcattcact 100  Q
    ||||| |||||||||||||| |||||| |  |||| || ||||| ||  |||||||| |||||||||||||| | || ||||||||||| |||||||| |    
T  26975085 ctcaagagcattgaagactcgaggattaccattatcgtcttctctaaagactatgcttcttcttcattttgtttggacgaacttgtccacatcattcatt 26975184  T
Q  101 acttcaaggaaaagagtcgtctcgttcttccagttttctatgatgtggaaccttctcacgtacgacatcagactaataggtatggtgcagcactttctga 200  Q
      | ||| |||||| || |  | ||| |||| ||||||||||     ||||||||||| || ||  | | || | | || ||||||| || |||| || |    
T  26975185 gttccaatgaaaagggtagcatagttattcctgttttctatggcacagaaccttctcatgtgcgtaaactgaatgacagttatggtgaagtacttgctaa 26975284  T
Q  201 gtttgaagaaaggttccaaaataacaagaaaaacatggagcggttgcagaaatggaagacagctctttaccaagctgcgaacttatctggctatcatttc 300  Q
    |  ||||||  |||| |||||||| ||  ||||| ||||||||||||  |||||||||| ||||||| |||||||||| |||||||||||| | ||||||    
T  26975285 gcatgaagaggggtttcaaaataaaaatgaaaacttggagcggttgcttaaatggaagaaagctcttaaccaagctgctaacttatctggccaccatttc 26975384  T
Q  301 aa 302  Q
    ||    
T  26975385 aa 26975386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 49 - 284
Target Start/End: Complemental strand, 27338171 - 27337936
Alignment:
Q  49 aactatgctacttcttcattttgtctagatgaacttgtccatatcattcactacttcaaggaaaagagtcgtctcgttcttccagttttctatgatgtgg 148  Q
    ||||||||  |||||||||||||  | || ||||||||||| |||||||||| || ||||  || | || ||   ||| | || |||||||||| || ||    
T  27338171 aactatgcatcttcttcattttgcttggacgaacttgtccacatcattcactgctacaagacaaggggttgttcggttttgcctgttttctatggtgcgg 27338072  T
Q  149 aaccttctcacgtacgacatcagactaataggtatggtgcagca-ctttctgagtttgaagaaaggttccaaaataacaagaaaaacatggagcggttgc 247  Q
    | ||| ||||||||||||||||||||   || ||||||| |||| ||| || ||  |||||| | |||||||||||||||| ||||||||||| |||||     
T  27338071 atcctactcacgtacgacatcagactgggagttatggtg-agcatcttactaagcatgaagataagttccaaaataacaaggaaaacatggagaggttga 27337973  T
Q  248 agaaatggaagacagctctttaccaagctgcgaactt 284  Q
    ||||||||||||  ||||||  ||||||||| |||||    
T  27337972 agaaatggaagatggctcttacccaagctgctaactt 27337936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 49 - 284
Target Start/End: Complemental strand, 27398911 - 27398676
Alignment:
Q  49 aactatgctacttcttcattttgtctagatgaacttgtccatatcattcactacttcaaggaaaagagtcgtctcgttcttccagttttctatgatgtgg 148  Q
    ||||||||  |||||||||||||  | || ||||||||||| |||||||||| || ||||  || | || ||   ||| | || |||||||||| || ||    
T  27398911 aactatgcatcttcttcattttgcttggacgaacttgtccacatcattcactgctacaagacaaggggttgttcggttttgcctgttttctatggtgcgg 27398812  T
Q  149 aaccttctcacgtacgacatcagactaataggtatggtgcagca-ctttctgagtttgaagaaaggttccaaaataacaagaaaaacatggagcggttgc 247  Q
    | ||| ||||||||||||||||||||   || ||||||| |||| ||| || ||  |||||| | |||||||||||||||| ||||||||||| |||||     
T  27398811 atcctactcacgtacgacatcagactgggagttatggtg-agcatcttactaagcatgaagataagttccaaaataacaaggaaaacatggagaggttga 27398713  T
Q  248 agaaatggaagacagctctttaccaagctgcgaactt 284  Q
    ||||||||||||  ||||||  ||||||||| |||||    
T  27398712 agaaatggaagatggctcttacccaagctgctaactt 27398676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 49 - 298
Target Start/End: Original strand, 26056007 - 26056256
Alignment:
Q  49 aactatgctacttcttcattttgtctagatgaacttgtccatatcattcactacttcaaggaaaagagtcgtctcgttcttccagttttctatgatgtgg 148  Q
    ||||||||  |||||||||||||| | || ||||||||||| |||||||||| || |||   ||||||| |  | ||  | || ||||||||||||||||    
T  26056007 aactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaacacaaagagttgcttagtattgcccgttttctatgatgtgg 26056106  T
Q  149 aaccttctcacgtacgacatcagactaataggtatggtgcagca-ctttctgagtttgaagaaaggttccaaaataacaagaaaaacatggagcggttgc 247  Q
    ||||| ||||| |||||||||||| |   || ||||||| |||| ||| || ||  | ||||  |||||||||||||| |||||||||||||||| ||||    
T  26056107 aacctactcacatacgacatcagagtgggagttatggtg-agcatcttactaagcataaagaggggttccaaaataacgagaaaaacatggagcgattgc 26056205  T
Q  248 agaaatggaagacagctctttaccaagctgcgaacttatctggctatcatt 298  Q
       |||||||||  ||||||   |||||||| ||||| || ||||||||||    
T  26056206 gtcaatggaagatggctcttactcaagctgctaacttgtccggctatcatt 26056256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 49 - 298
Target Start/End: Original strand, 26075977 - 26076226
Alignment:
Q  49 aactatgctacttcttcattttgtctagatgaacttgtccatatcattcactacttcaaggaaaagagtcgtctcgttcttccagttttctatgatgtgg 148  Q
    ||||||||  |||||||||||||| | || ||||||||||| |||||||||| || |||   ||||||| |  | ||  | || ||||||||||||||||    
T  26075977 aactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaacacaaagagttgcttagtattgcccgttttctatgatgtgg 26076076  T
Q  149 aaccttctcacgtacgacatcagactaataggtatggtgcagca-ctttctgagtttgaagaaaggttccaaaataacaagaaaaacatggagcggttgc 247  Q
    ||||| ||||| |||||||||||| |   || ||||||| |||| ||| || ||  | ||||  |||||||||||||| |||||||||||||||| ||||    
T  26076077 aacctactcacatacgacatcagagtgggagttatggtg-agcatcttactaagcataaagaggggttccaaaataacgagaaaaacatggagcgattgc 26076175  T
Q  248 agaaatggaagacagctctttaccaagctgcgaacttatctggctatcatt 298  Q
       |||||||||  ||||||   |||||||| ||||| || ||||||||||    
T  26076176 gtcaatggaagatggctcttactcaagctgctaacttgtccggctatcatt 26076226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 52 - 302
Target Start/End: Original strand, 28185450 - 28185700
Alignment:
Q  52 tatgctacttcttcattttgtctagatgaacttgtccatatcattcactacttcaaggaaaagagtcgtctcgttcttccagttttctatgatgtggaac 151  Q
    |||||| |||||||||||||  | || ||||||||||| |||||| ||| |||||||||||   | ||||| ||| | ||| ||||||||||||||||||    
T  28185450 tatgcttcttcttcattttgcttggacgaacttgtccacatcattaactgcttcaaggaaagcgggcgtctagttttgccaattttctatgatgtggaac 28185549  T
Q  152 cttctcacgtacgacatcagactaataggtatggtgcagcactttctgagtttgaagaaaggttccaaaataacaagaaaaacatggagcggttgcagaa 251  Q
    |||||||||| |||||||| ||    || ||||||  ||||||   |||   |  | | | |||||||||||||||| | | ||||||| ||||||||||    
T  28185550 cttctcacgtgcgacatcacacgggcagttatggtaaagcactggatgatcatataaagaagttccaaaataacaaggatagcatggagaggttgcagaa 28185649  T
Q  252 atggaagacagctctttaccaagctgcgaacttatctggctatcatttcaa 302  Q
    ||||||||  ||||||   ||| |||| ||||| |||||| | ||||||||    
T  28185650 atggaagagtgctcttactcaaactgctaacttctctggccaccatttcaa 28185700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 52 - 302
Target Start/End: Complemental strand, 28297816 - 28297566
Alignment:
Q  52 tatgctacttcttcattttgtctagatgaacttgtccatatcattcactacttcaaggaaaagagtcgtctcgttcttccagttttctatgatgtggaac 151  Q
    |||||| |||||||||||||  | || ||||||||||| |||||||||| |||||||||||  || ||||| ||| | ||  |||| |||||||||||||    
T  28297816 tatgcttcttcttcattttgcttggacgaacttgtccacatcattcactgcttcaaggaaagtagccgtctagttttgccgattttttatgatgtggaac 28297717  T
Q  152 cttctcacgtacgacatcagactaataggtatggtgcagcactttctgagtttgaagaaaggttccaaaataacaagaaaaacatggagcggttgcagaa 251  Q
    ||||||| || ||||||||   |   || |||| |  ||||||   |||   |  ||| | |||||||||||||||||| ||||||||| ||||||||||    
T  28297716 cttctcatgtgcgacatcaacatggaagttatgctaaagcactggatgatcatatagagaagttccaaaataacaagaataacatggagaggttgcagaa 28297617  T
Q  252 atggaagacagctctttaccaagctgcgaacttatctggctatcatttcaa 302  Q
    ||||||||  ||||||   ||| |||| ||||| |||||| | ||||||||    
T  28297616 atggaagagtgctcttactcaaactgctaacttctctggccaccatttcaa 28297566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 52 - 302
Target Start/End: Original strand, 28514257 - 28514507
Alignment:
Q  52 tatgctacttcttcattttgtctagatgaacttgtccatatcattcactacttcaaggaaaagagtcgtctcgttcttccagttttctatgatgtggaac 151  Q
    |||||| |||||||||||||  | || ||||||||||| |||||||||| |||||||||||  || ||||| ||| | ||  |||| |||||||||||||    
T  28514257 tatgcttcttcttcattttgcttggacgaacttgtccacatcattcactgcttcaaggaaagtagccgtctagttttgccgattttttatgatgtggaac 28514356  T
Q  152 cttctcacgtacgacatcagactaataggtatggtgcagcactttctgagtttgaagaaaggttccaaaataacaagaaaaacatggagcggttgcagaa 251  Q
    ||||||| || ||||||||   |   || |||| |  ||||||   |||   |  ||| | |||||||||||||||||| ||||||||| ||||||||||    
T  28514357 cttctcatgtgcgacatcaacatggaagttatgctaaagcactggatgatcatatagagaagttccaaaataacaagaataacatggagaggttgcagaa 28514456  T
Q  252 atggaagacagctctttaccaagctgcgaacttatctggctatcatttcaa 302  Q
    ||||||||  ||||||   ||| |||| ||||| |||||| | ||||||||    
T  28514457 atggaagagtgctcttactcaaactgctaacttctctggccaccatttcaa 28514507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 52 - 170
Target Start/End: Original strand, 28227034 - 28227152
Alignment:
Q  52 tatgctacttcttcattttgtctagatgaacttgtccatatcattcactacttcaaggaaaagagtcgtctcgttcttccagttttctatgatgtggaac 151  Q
    |||||| |||||||||||||  | || ||||||||||| |||||||| | ||||||||||||  | || || ||| | ||| ||||||||||||||||||    
T  28227034 tatgcttcttcttcattttgcttggacgaacttgtccacatcattcattgcttcaaggaaaatcggcgccttgttttgccaattttctatgatgtggaac 28227133  T
Q  152 cttctcacgtacgacatca 170  Q
    ||||||| || ||||||||    
T  28227134 cttctcatgtgcgacatca 28227152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 40 - 144
Target Start/End: Original strand, 2184360 - 2184464
Alignment:
Q  40 ttctcaaagaactatgctacttcttcattttgtctagatgaacttgtccatatcattcactacttcaaggaaaagagtcgtctcgttcttccagttttct 139  Q
    |||||||||||||||||| |||||||||||||| | || ||||||||||| |||||||  |||| ||||  |||| | || || ||||| ||||||||||    
T  2184360 ttctcaaagaactatgcttcttcttcattttgtttggacgaacttgtccacatcattcgttactccaagtcaaagggacgcctggttctaccagttttct 2184459  T
Q  140 atgat 144  Q
    |||||    
T  2184460 atgat 2184464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 52 - 259
Target Start/End: Original strand, 28242888 - 28243095
Alignment:
Q  52 tatgctacttcttcattttgtctagatgaacttgtccatatcattcactacttcaaggaaaagagtcgtctcgttcttccagttttctatgatgtggaac 151  Q
    |||||| |||||||||||||  | || ||||||||||| |||||||||| || |||| ||||  | || || ||| | ||| ||||||||||||||||||    
T  28242888 tatgcttcttcttcattttgcttggacgaacttgtccacatcattcactgctgcaagaaaaatggacgcctagttttgccaattttctatgatgtggaac 28242987  T
Q  152 cttctcacgtacgacatcagactaataggtatggtgcagcactttctgagtttgaagaaaggttccaaaataacaagaaaaacatggagcggttgcagaa 251  Q
    ||||| ||||  ||||||||| |   || ||||||  ||||||  |||||  |   || | ||||||||||| || | | ||||||||| ||||||||||    
T  28242988 cttctaacgtgagacatcagattggcagttatggtaaagcactggctgagcatattgagaagttccaaaatagcacggataacatggagaggttgcagaa 28243087  T
Q  252 atggaaga 259  Q
    ||||||||    
T  28243088 atggaaga 28243095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 52 - 170
Target Start/End: Original strand, 28234648 - 28234765
Alignment:
Q  52 tatgctacttcttcattttgtctagatgaacttgtccatatcattcactacttcaaggaaaagagtcgtctcgttcttccagttttctatgatgtggaac 151  Q
    |||||| |||||||||||||  | || ||||||||||| |||||| | | |||| ||||||| || || || ||| | ||| ||||||||||||||||||    
T  28234648 tatgcttcttcttcattttgcttggacgaacttgtccacatcattta-tgcttcgaggaaaatagacgcctagttttgccaattttctatgatgtggaac 28234746  T
Q  152 cttctcacgtacgacatca 170  Q
    |||||||||| ||||||||    
T  28234747 cttctcacgtgcgacatca 28234765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 52 - 170
Target Start/End: Original strand, 28325565 - 28325683
Alignment:
Q  52 tatgctacttcttcattttgtctagatgaacttgtccatatcattcactacttcaaggaaaagagtcgtctcgttcttccagttttctatgatgtggaac 151  Q
    |||||| ||||||| |||||  | |||||||||||||| || ||||||| |||||| |||||  | || || |||   ||||||||||| ||||||||||    
T  28325565 tatgcttcttcttccttttgcttggatgaacttgtccacattattcactgcttcaaagaaaatgggcgcctagtttagccagttttctacgatgtggaac 28325664  T
Q  152 cttctcacgtacgacatca 170  Q
    |||||||||| ||||||||    
T  28325665 cttctcacgtgcgacatca 28325683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 49 - 153
Target Start/End: Complemental strand, 27677720 - 27677616
Alignment:
Q  49 aactatgctacttcttcattttgtctagatgaacttgtccatatcattcactacttcaaggaaaagagtcgtctcgttcttccagttttctatgatgtgg 148  Q
    ||||||||  |||||||||||||| | || ||||||||||| |||||||||| || ||||  |||| |||| |||||||| || ||||||| || |||||    
T  27677720 aactatgcctcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaagggtcgcctcgttctgcctgttttctttgctgtgg 27677621  T
Q  149 aacct 153  Q
    |||||    
T  27677620 aacct 27677616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 49 - 153
Target Start/End: Original strand, 27679027 - 27679131
Alignment:
Q  49 aactatgctacttcttcattttgtctagatgaacttgtccatatcattcactacttcaaggaaaagagtcgtctcgttcttccagttttctatgatgtgg 148  Q
    ||||||||  |||||||||||||| | || ||||||||||| |||||||||| || ||||  |||| |||| |||||||| || ||||||| || |||||    
T  27679027 aactatgcctcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaagggtcgcctcgttctgcctgttttctttggtgtgg 27679126  T
Q  149 aacct 153  Q
    |||||    
T  27679127 aacct 27679131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 40 - 227
Target Start/End: Complemental strand, 28098484 - 28098297
Alignment:
Q  40 ttctcaaagaactatgctacttcttcattttgtctagatgaacttgtccatatcattcactacttcaaggaaaagagtcgtctcgttcttccagttttct 139  Q
    ||||| |||||||||||| ||||||  |||||| | |||||||||||||| |||||||||   | | | |||||| || |  ||||| ||||  |||| |    
T  28098484 ttctctaagaactatgcttcttctttgttttgtttggatgaacttgtccacatcattcaccgttacgaagaaaagggttgcttcgtttttcctatttttt 28098385  T
Q  140 atgatgtggaaccttctcacgtacgacatcagactaataggtatggtgcagcactttctgagtttgaagaaaggttccaaaataacaa 227  Q
     ||| ||||||||||||||||| |||||||||||    || ||||||| |||| |  || ||  |||||| |||||||||||||||||    
T  28098384 gtgacgtggaaccttctcacgtgcgacatcagacggggagttatggtgaagcattagctaagcatgaagagaggttccaaaataacaa 28098297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 97
Target Start/End: Original strand, 2184970 - 2185027
Alignment:
Q  40 ttctcaaagaactatgctacttcttcattttgtctagatgaacttgtccatatcattc 97  Q
    ||||||||| |||||||| |||||||||||||| | || |||||||||||||||||||    
T  2184970 ttctcaaaggactatgcttcttcttcattttgtttggacgaacttgtccatatcattc 2185027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 170
Target Start/End: Original strand, 26048926 - 26049047
Alignment:
Q  49 aactatgctacttcttcattttgtctagatgaacttgtccatatcattcactacttcaaggaaaagagtcgtctcgttcttccagttttctatgatgtgg 148  Q
    ||||||||  |||||||||||||| | || ||||||||||| |||||||||| || ||||  ||||||| |  | ||  | || ||||| ||||||||||    
T  26048926 aactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaagagttgcttagtattgcccgttttttatgatgtgg 26049025  T
Q  149 aaccttctcacgtacgacatca 170  Q
    ||||| ||||| ||||||||||    
T  26049026 aacctactcacatacgacatca 26049047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 170
Target Start/End: Original strand, 26070095 - 26070216
Alignment:
Q  49 aactatgctacttcttcattttgtctagatgaacttgtccatatcattcactacttcaaggaaaagagtcgtctcgttcttccagttttctatgatgtgg 148  Q
    ||||||||  |||||||||||||| | || ||||||||||| |||||||||| || ||||  ||||||| |  | ||  | || ||||| ||||||||||    
T  26070095 aactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaagagttgcttagtattgcccgttttttatgatgtgg 26070194  T
Q  149 aaccttctcacgtacgacatca 170  Q
    ||||| ||||| ||||||||||    
T  26070195 aacctactcacatacgacatca 26070216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 98
Target Start/End: Original strand, 26959205 - 26959296
Alignment:
Q  7 agcattgaagactccaggattgcagttattgtattctcaaagaactatgctacttcttcattttgtctagatgaacttgtccatatcattca 98  Q
    |||||||||||||| ||||||||  |||| || ||||| ||| | |||||| ||||||| |||| | | |||||||||||||| ||||||||    
T  26959205 agcattgaagactcgaggattgccattatcgttttctctaaggaatatgcttcttcttcgttttatttggatgaacttgtccacatcattca 26959296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 90
Target Start/End: Original strand, 26617359 - 26617441
Alignment:
Q  8 gcattgaagactccaggattgcagttattgtattctcaaagaactatgctacttcttcattttgtctagatgaacttgtccat 90  Q
    |||||||| |||| || |||||  || |||| ||||| ||  |||||||| |||||||||||||| |||||||||||||||||    
T  26617359 gcattgaaaactcaagaattgccattgttgtcttctctaaagactatgcttcttcttcattttgtttagatgaacttgtccat 26617441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 170
Target Start/End: Original strand, 26623068 - 26623178
Alignment:
Q  60 ttcttcattttgtctagatgaacttgtccatatcattcactacttcaaggaaaagagtcgtctcgttcttccagttttctatgatgtggaaccttctcac 159  Q
    ||||||||||||| | |||||||||||||| |||||||||| || |||   |||| ||||||||||| | || || |||||||  ||||| ||| |||||    
T  26623068 ttcttcattttgtttggatgaacttgtccacatcattcactgctacaaaacaaagggtcgtctcgttttgcccgtcttctatggcgtggatcctactcac 26623167  T
Q  160 gtacgacatca 170  Q
     |||| |||||    
T  26623168 atacggcatca 26623178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 298
Target Start/End: Original strand, 26656070 - 26656319
Alignment:
Q  49 aactatgctacttcttcattttgtctagatgaacttgtccatatcattcactacttcaaggaaaagagtcgtctcgttcttccagttttctatgatgtgg 148  Q
    ||||||||  |||||||||||||| | || ||||||||||| |||||||| | ||  |||  |||| || ||   ||| | || |||||||||| |||||    
T  26656070 aactatgcatcttcttcattttgtttggacgaacttgtccacatcattcattgctataagacaaagggttgttcggttttgcctgttttctatggtgtgg 26656169  T
Q  149 aaccttctcacgtacgacatcagactaataggtatggtgcagca-ctttctgagtttgaagaaaggttccaaaataacaagaaaaacatggagcggttgc 247  Q
    | ||| ||||| ||||||||||||||   || || |||| |||| ||| || ||  |||| | | |||||||||||||||| |||||||| || |||||     
T  26656170 atcctactcacatacgacatcagactggaagttacggtg-agcatcttactaagcatgaaaagaagttccaaaataacaaggaaaacatgcagaggttgg 26656268  T
Q  248 agaaatggaagacagctctttaccaagctgcgaacttatctggctatcatt 298  Q
    || |||||||||  |||||   | ||||||| ||||| |||||||| ||||    
T  26656269 agcaatggaagatggctctgaccaaagctgccaacttgtctggctaccatt 26656319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 90
Target Start/End: Original strand, 26723287 - 26723369
Alignment:
Q  8 gcattgaagactccaggattgcagttattgtattctcaaagaactatgctacttcttcattttgtctagatgaacttgtccat 90  Q
    |||||||| |||| || |||||  || |||| ||||| ||  |||||||| |||||||||||||| |||||||||||||||||    
T  26723287 gcattgaaaactcaagaattgccattgttgtcttctctaaagactatgcttcttcttcattttgtttagatgaacttgtccat 26723369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 170
Target Start/End: Original strand, 26729046 - 26729156
Alignment:
Q  60 ttcttcattttgtctagatgaacttgtccatatcattcactacttcaaggaaaagagtcgtctcgttcttccagttttctatgatgtggaaccttctcac 159  Q
    ||||||||||||| | |||||||||||||| |||||||||| || |||   |||| ||||||||||| | || || |||||||  ||||| ||| |||||    
T  26729046 ttcttcattttgtttggatgaacttgtccacatcattcactgctacaaaacaaagggtcgtctcgttttgcccgtcttctatggcgtggatcctactcac 26729145  T
Q  160 gtacgacatca 170  Q
     |||| |||||    
T  26729146 atacggcatca 26729156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 298
Target Start/End: Original strand, 26762041 - 26762290
Alignment:
Q  49 aactatgctacttcttcattttgtctagatgaacttgtccatatcattcactacttcaaggaaaagagtcgtctcgttcttccagttttctatgatgtgg 148  Q
    ||||||||  |||||||||||||| | || ||||||||||| |||||||| | ||  |||  |||| || ||   ||| | || |||||||||| |||||    
T  26762041 aactatgcatcttcttcattttgtttggacgaacttgtccacatcattcattgctataagacaaagggttgttcggttttgcctgttttctatggtgtgg 26762140  T
Q  149 aaccttctcacgtacgacatcagactaataggtatggtgcagca-ctttctgagtttgaagaaaggttccaaaataacaagaaaaacatggagcggttgc 247  Q
    | ||| ||||| ||||||||||||||   || || |||| |||| ||| || ||  |||| | | |||||||||||||||| |||||||| || |||||     
T  26762141 atcctactcacatacgacatcagactggaagttacggtg-agcatcttactaagcatgaaaagaagttccaaaataacaaggaaaacatgcagaggttgg 26762239  T
Q  248 agaaatggaagacagctctttaccaagctgcgaacttatctggctatcatt 298  Q
    || |||||||||  |||||   | ||||||| ||||| |||||||| ||||    
T  26762240 agcaatggaagatggctctgaccaaagctgccaacttgtctggctaccatt 26762290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 171
Target Start/End: Original strand, 26823921 - 26824043
Alignment:
Q  49 aactatgctacttcttcattttgtctagatgaacttgtccatatcattcactacttcaaggaaaagagtcgtctcgttcttccagttttctatgatgtgg 148  Q
    ||||||||  |||||||||||||| | || ||||||||||| ||||||| |  || |||||||||| | || |||||| | || |||||||||| |||||    
T  26823921 aactatgcctcttcttcattttgtttggacgaacttgtccacatcattcgcgtctacaaggaaaaggggcgcctcgttttgcctgttttctatggtgtgg 26824020  T
Q  149 aaccttctcacgtacgacatcag 171  Q
    | |||  | || |||||||||||    
T  26824021 atcctggtgacatacgacatcag 26824043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 302
Target Start/End: Original strand, 26937370 - 26937440
Alignment:
Q  232 aacatggagcggttgcagaaatggaagacagctctttaccaagctgcgaacttatctggctatcatttcaa 302  Q
    ||||||||| |||||| ||||||||||| ||||||| ||||||| || ||||| |||||| | ||||||||    
T  26937370 aacatggagaggttgcggaaatggaagatagctcttaaccaagcggcaaacttgtctggccaccatttcaa 26937440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 259
Target Start/End: Original strand, 28234808 - 28234854
Alignment:
Q  213 gttccaaaataacaagaaaaacatggagcggttgcagaaatggaaga 259  Q
    |||||||||||||||| | ||||||||| ||||||||||||||||||    
T  28234808 gttccaaaataacaaggataacatggagaggttgcagaaatggaaga 28234854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 192
Target Start/End: Original strand, 26937162 - 26937318
Alignment:
Q  36 tgtattctcaaagaactatgctacttcttcattttgtctagatgaacttgtccatatcattcactacttcaaggaaaagagtcgtctcgttcttccagtt 135  Q
    ||||||||| |  |||||||| ||||||||||||||| | || ||||||||||| ||| || ||| |||||||  |||  ||| |||  || | ||  ||    
T  26937162 tgtattctctatcaactatgccacttcttcattttgtttggacgaacttgtccacatcgttgactgcttcaagacaaaaggtcatctaattttgcctatt 26937261  T
Q  136 ttctatgatgtggaaccttctcacgtacgacatcagactaataggtatggtgcagca 192  Q
    |||||||| ||||| ||||||||||| ||||| || |||   || ||||||||||||    
T  26937262 ttctatgaagtggatccttctcacgttcgacaccaaactgggagttatggtgcagca 26937318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 249
Target Start/End: Complemental strand, 27718485 - 27718285
Alignment:
Q  49 aactatgctacttcttcattttgtctagatgaacttgtccatatcattcactacttcaaggaaaagagtcgtctcgttcttccagttttctatgatgtgg 148  Q
    ||||||||  ||||||| |||||| | || ||||||||||| || ||||||| || ||||  |||| |||| |||||| | || |||||||  |  ||||    
T  27718485 aactatgcctcttcttcgttttgtttggacgaacttgtccacataattcactgctacaagacaaagggtcgcctcgttttgcctgttttcttcggcgtgg 27718386  T
Q  149 aaccttctcacgtacgacatcagactaataggtatggtgcagcactttctgagtttgaagaaaggttccaaaataacaagaaaaacatggagcggttgca 248  Q
    ||||| || |||| ||||||||||    ||| ||||||| |||| |  |||||  |||| | ||||| |||||| | ||||| ||||||||| |||||||    
T  27718385 aacctactaacgtgcgacatcagaaaggtagttatggtgaagcattggctgagcatgaaaagaggtttcaaaatgataagaataacatggagaggttgca 27718286  T
Q  249 g 249  Q
    |    
T  27718285 g 27718285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 212 - 267
Target Start/End: Original strand, 24715829 - 24715884
Alignment:
Q  212 ggttccaaaataacaagaaaaacatggagcggttgcagaaatggaagacagctctt 267  Q
    |||| |||||||||||| || ||||||| ||||||| ||||| |||||||||||||    
T  24715829 ggtttcaaaataacaaggaacacatggaccggttgctgaaatagaagacagctctt 24715884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 40 - 115
Target Start/End: Complemental strand, 26342049 - 26341974
Alignment:
Q  40 ttctcaaagaactatgctacttcttcattttgtctagatgaacttgtccatatcattcactacttcaaggaaaaga 115  Q
    |||||||  ||||||||| ||||||| |||||| | || ||||||||||| |||||||| | |||||||| |||||    
T  26342049 ttctcaatcaactatgcttcttcttcgttttgtttggacgaacttgtccacatcattcattgcttcaaggcaaaga 26341974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 298
Target Start/End: Original strand, 25481986 - 25482072
Alignment:
Q  212 ggttccaaaataacaagaaaaacatggagcggttgcagaaatggaagacagctctttaccaagctgcgaacttatctggctatcatt 298  Q
    |||||||||||||| |||||||||||||||| ||||   |||||||||  ||||||   |||||||| || || || ||||||||||    
T  25481986 ggttccaaaataacgagaaaaacatggagcgattgcgtcaatggaagatggctcttactcaagctgctaatttgtccggctatcatt 25482072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #51
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 137
Target Start/End: Complemental strand, 27706498 - 27706420
Alignment:
Q  59 cttcttcattttgtctagatgaacttgtccatatcattcactacttcaaggaaaagagtcgtctcgttcttccagtttt 137  Q
    |||||||||||||| | || ||||||||||| |||||||||| || ||||  |||| |||| |||||||| || |||||    
T  27706498 cttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaagggtcgcctcgttctgcctgtttt 27706420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #52
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 174
Target Start/End: Original strand, 29826175 - 29826233
Alignment:
Q  116 gtcgtctcgttcttccagttttctatgatgtggaaccttctcacgtacgacatcagact 174  Q
    ||||||||||| | ||  |||||||||||||||| |||||||| || ||||||||||||    
T  29826175 gtcgtctcgttttgcctattttctatgatgtggatccttctcatgtgcgacatcagact 29826233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #53
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 114
Target Start/End: Original strand, 28150018 - 28150083
Alignment:
Q  49 aactatgctacttcttcattttgtctagatgaacttgtccatatcattcactacttcaaggaaaag 114  Q
    |||||| || |||||||||||||| | || ||||||||||| || ||||||| |||||||| ||||    
T  28150018 aactatacttcttcttcattttgtttggacgaacttgtccacattattcactgcttcaaggcaaag 28150083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #54
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 117
Target Start/End: Original strand, 25481823 - 25481891
Alignment:
Q  49 aactatgctacttcttcattttgtctagatgaacttgtccatatcattcactacttcaaggaaaagagt 117  Q
    ||||||||  |||||||||||||| | || ||||||||||| |||||||||| || ||||  |||||||    
T  25481823 aactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaagagt 25481891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #55
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 249
Target Start/End: Complemental strand, 27611108 - 27610908
Alignment:
Q  49 aactatgctacttcttcattttgtctagatgaacttgtccatatcattcactacttcaaggaaaagagtcgtctcgttcttccagttttctatgatgtgg 148  Q
    ||||||||  ||||||| |||||| | || ||||||||||| || ||||||| || ||||  |||| |||| |||||| | || |||||||  |  ||||    
T  27611108 aactatgcctcttcttcgttttgtttggacgaacttgtccacataattcactgctacaagacaaagggtcgcctcgttttgcctgttttcttcggcgtgg 27611009  T
Q  149 aaccttctcacgtacgacatcagactaataggtatggtgcagcactttctgagtttgaagaaaggttccaaaataacaagaaaaacatggagcggttgca 248  Q
    ||||| || | || ||||||||||    ||| ||||||| |||| |  |||||  |||| | ||||| |||||| | ||||| ||||||||| |||||||    
T  27611008 aacctactaaagtgcgacatcagaaaggtagttatggtgaagcattggctgagcatgaaaagaggtttcaaaatgataagaataacatggagaggttgca 27610909  T
Q  249 g 249  Q
    |    
T  27610908 g 27610908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #56
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 273
Target Start/End: Complemental strand, 27665055 - 27664999
Alignment:
Q  217 caaaataacaagaaaaacatggagcggttgcagaaatggaagacagctctttaccaa 273  Q
    |||||| ||| | |||||||||||||||||| ||||||||||  ||||||| |||||    
T  27665055 caaaatgacatggaaaacatggagcggttgctgaaatggaaggaagctcttcaccaa 27664999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #57
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 259
Target Start/End: Original strand, 28181353 - 28181405
Alignment:
Q  207 agaaaggttccaaaataacaagaaaaacatggagcggttgcagaaatggaaga 259  Q
    ||| |||||||||||||||||| | | ||||||  ||||||||||||||||||    
T  28181353 agagaggttccaaaataacaagcatagcatggataggttgcagaaatggaaga 28181405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #58
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 259
Target Start/End: Original strand, 28227189 - 28227241
Alignment:
Q  207 agaaaggttccaaaataacaagaaaaacatggagcggttgcagaaatggaaga 259  Q
    ||| |||||||||||||||||| | | ||||||  ||||||||||||||||||    
T  28227189 agagaggttccaaaataacaagcatagcatggataggttgcagaaatggaaga 28227241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 17993838 - 17993537
Alignment:
Q  1 ctcaaaagcattgaagactccaggattgcagttattgtattctcaaagaactatgctacttcttcattttgtctagatgaacttgtccatatcattcact 100  Q
    ||||| |||||||||||||| || |||||  |||| || ||||||||| |||||||| |||||||||||||| |||| ||||||||||| |||||||| |    
T  17993838 ctcaagagcattgaagactcaagaattgcgattatcgtcttctcaaaggactatgcttcttcttcattttgtttagacgaacttgtccacatcattcaat 17993739  T
Q  101 acttcaaggaaaagagt-cgtctcgttcttccagttttctatgatgtggaaccttctcacgtacgacatcagactaataggtatggtgcagcactttctg 199  Q
     || ||| |||||| || || |  ||  |||| ||||||||||     ||||||||||| || |||||||||| | |||| ||||||| ||||||| ||     
T  17993738 gctccaatgaaaagggtacgacg-gtaattcctgttttctatggcacagaaccttctcaggtgcgacatcagaatgatagttatggtgaagcacttgcta 17993640  T
Q  200 agtttgaagaaaggttccaaaataacaagaaaaacatggagcggttgcagaaatggaagacagctctttaccaagctgcgaacttatctggctatcattt 299  Q
    ||  ||||||  | || ||||||| |||| |||||||||||||||||  ||||||||||| ||||||| |||||||||| |||||||||||| | |||||    
T  17993639 agcatgaagagggttttcaaaatagcaaggaaaacatggagcggttgttgaaatggaagaaagctcttaaccaagctgctaacttatctggccaccattt 17993540  T
Q  300 caa 302  Q
    |||    
T  17993539 caa 17993537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 174
Target Start/End: Original strand, 3279857 - 3279897
Alignment:
Q  134 ttttctatgatgtggaaccttctcacgtacgacatcagact 174  Q
    |||||||||||||||||||||| ||||| ||||||||||||    
T  3279857 ttttctatgatgtggaaccttcccacgtgcgacatcagact 3279897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 55; Significance: 1e-22; HSPs: 6)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 52 - 170
Target Start/End: Original strand, 34809 - 34927
Alignment:
Q  52 tatgctacttcttcattttgtctagatgaacttgtccatatcattcactacttcaaggaaaagagtcgtctcgttcttccagttttctatgatgtggaac 151  Q
    |||||| |||||||||||||  | || ||||||||||| |||||||||| |||||||||||   | ||||| ||| | ||| ||||||||||||||||||    
T  34809 tatgcttcttcttcattttgcttggacgaacttgtccacatcattcactgcttcaaggaaagcgggcgtctagttttgccaattttctatgatgtggaac 34908  T
Q  152 cttctcacgtacgacatca 170  Q
    |||||||||| ||||||||    
T  34909 cttctcacgtgcgacatca 34927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 52 - 170
Target Start/End: Original strand, 27532 - 27650
Alignment:
Q  52 tatgctacttcttcattttgtctagatgaacttgtccatatcattcactacttcaaggaaaagagtcgtctcgttcttccagttttctatgatgtggaac 151  Q
    |||||| |||||||||||||  | || ||||||||||| |||||||| | ||||||||||||  | || || ||| | ||| ||||||||||||||||||    
T  27532 tatgcttcttcttcattttgcttggacgaacttgtccacatcattcattgcttcaaggaaaatcggcgccttgttttgccaattttctatgatgtggaac 27631  T
Q  152 cttctcacgtacgacatca 170  Q
    ||||||| || ||||||||    
T  27632 cttctcatgtgcgacatca 27650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 52 - 259
Target Start/End: Original strand, 43050 - 43257
Alignment:
Q  52 tatgctacttcttcattttgtctagatgaacttgtccatatcattcactacttcaaggaaaagagtcgtctcgttcttccagttttctatgatgtggaac 151  Q
    |||||| |||||||||||||  | || ||||||||||| |||||||||| || |||| ||||  | || || ||| | ||| ||||||||||||||||||    
T  43050 tatgcttcttcttcattttgcttggacgaacttgtccacatcattcactgctgcaagaaaaatggacgcctagttttgccaattttctatgatgtggaac 43149  T
Q  152 cttctcacgtacgacatcagactaataggtatggtgcagcactttctgagtttgaagaaaggttccaaaataacaagaaaaacatggagcggttgcagaa 251  Q
    ||||| ||||  ||||||||| |   || ||||||  ||||||  |||||  |   || | ||||||||||| || | | ||||||||| ||||||||||    
T  43150 cttctaacgtgagacatcagattggcagttatggtaaagcactggctgagcatattgagaagttccaaaatagcacggataacatggagaggttgcagaa 43249  T
Q  252 atggaaga 259  Q
    ||||||||    
T  43250 atggaaga 43257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 52 - 170
Target Start/End: Original strand, 116880 - 116998
Alignment:
Q  52 tatgctacttcttcattttgtctagatgaacttgtccatatcattcactacttcaaggaaaagagtcgtctcgttcttccagttttctatgatgtggaac 151  Q
    |||||| ||||||| |||||  | |||||||||||||| || ||||||| |||||| |||||  | || || |||   ||||||||||| ||||||||||    
T  116880 tatgcttcttcttccttttgcttggatgaacttgtccacattattcactgcttcaaagaaaatgggcgcctagtttagccagttttctacgatgtggaac 116979  T
Q  152 cttctcacgtacgacatca 170  Q
    |||||||||| ||||||||    
T  116980 cttctcacgtgcgacatca 116998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 259
Target Start/End: Original strand, 34970 - 35016
Alignment:
Q  213 gttccaaaataacaagaaaaacatggagcggttgcagaaatggaaga 259  Q
    |||||||||||||||| | ||||||||| ||||||||||||||||||    
T  34970 gttccaaaataacaaggataacatggagaggttgcagaaatggaaga 35016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 259
Target Start/End: Original strand, 27687 - 27739
Alignment:
Q  207 agaaaggttccaaaataacaagaaaaacatggagcggttgcagaaatggaaga 259  Q
    ||| |||||||||||||||||| | | ||||||  ||||||||||||||||||    
T  27687 agagaggttccaaaataacaagcatagcatggataggttgcagaaatggaaga 27739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 50 - 210
Target Start/End: Complemental strand, 5091059 - 5090899
Alignment:
Q  50 actatgctacttcttcattttgtctagatgaacttgtccatatcattcactacttcaaggaaaagagtcgtctcgttcttccagttttctatgatgtgga 149  Q
    |||||||| ||||||| |||||| ||||||||||||||||||| ||||||| || |||||||||  || | || ||| | ||  ||||||||| ||||||    
T  5091059 actatgcttcttcttcgttttgtttagatgaacttgtccatattattcactgctccaaggaaaatggttgcctggttttgcctattttctatggtgtgga 5090960  T
Q  150 accttctcacgtacgacatcagactaataggtatggtgcagcactttctgagtttgaagaa 210  Q
    ||||||||| || ||| ||||||||   || ||||||| ||||||| |||||  |||||||    
T  5090959 accttctcatgtgcgatatcagactggaagttatggtgaagcacttgctgagcatgaagaa 5090899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 49 - 170
Target Start/End: Complemental strand, 18655570 - 18655449
Alignment:
Q  49 aactatgctacttcttcattttgtctagatgaacttgtccatatcattcactacttcaaggaaaagagtcgtctcgttcttccagttttctatgatgtgg 148  Q
    ||||||||  |||||||||||||| | || ||||||||||  |||||||||| || ||||  |||| ||||||||||| |||| ||||||||||  ||||    
T  18655570 aactatgcctcttcttcattttgtttggacgaacttgtccgcatcattcactgctacaagacaaagggtcgtctcgtttttcctgttttctatggcgtgg 18655471  T
Q  149 aaccttctcacgtacgacatca 170  Q
    | ||| ||||| ||||||||||    
T  18655470 atcctactcacatacgacatca 18655449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 170
Target Start/End: Complemental strand, 18679660 - 18679539
Alignment:
Q  49 aactatgctacttcttcattttgtctagatgaacttgtccatatcattcactacttcaaggaaaagagtcgtctcgttcttccagttttctatgatgtgg 148  Q
    ||||||||  |||||||||||||| | || ||||||||||| |||||||||| || ||||  |||| ||||||| ||| | || ||||||||||  ||||    
T  18679660 aactatgcctcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaagggtcgtcttgttttgcctgttttctatgtcgtgg 18679561  T
Q  149 aaccttctcacgtacgacatca 170  Q
    | ||| ||||| || |||||||    
T  18679560 atcctactcacatatgacatca 18679539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 299
Target Start/End: Complemental strand, 18699328 - 18699243
Alignment:
Q  214 ttccaaaataacaagaaaaacatggagcggttgcagaaatggaagacagctctttaccaagctgcgaacttatctggctatcattt 299  Q
    |||||||||||||||||||||||||||||||||||  ||||||||  ||||||   | ||||||| ||||| || ||||| |||||    
T  18699328 ttccaaaataacaagaaaaacatggagcggttgcatcaatggaagttagctctgaccgaagctgctaacttgtccggctaccattt 18699243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 18655405 - 18655361
Alignment:
Q  214 ttccaaaataacaagaaaaacatggagcggttgcagaaatggaag 258  Q
    |||||||||||||||||||||||||||||||||||  ||||||||    
T  18655405 ttccaaaataacaagaaaaacatggagcggttgcatcaatggaag 18655361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 18724013 - 18723969
Alignment:
Q  214 ttccaaaataacaagaaaaacatggagcggttgcagaaatggaag 258  Q
    |||||||||||||||||||||||||||||||||||  ||||||||    
T  18724013 ttccaaaataacaagaaaaacatggagcggttgcatcaatggaag 18723969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 18731432 - 18731388
Alignment:
Q  214 ttccaaaataacaagaaaaacatggagcggttgcagaaatggaag 258  Q
    |||||||||||||||||||||||||||||||||||  ||||||||    
T  18731432 ttccaaaataacaagaaaaacatggagcggttgcatcaatggaag 18731388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 214 - 299
Target Start/End: Complemental strand, 18679495 - 18679410
Alignment:
Q  214 ttccaaaataacaagaaaaacatggagcggttgcagaaatggaagacagctctttaccaagctgcgaacttatctggctatcattt 299  Q
    |||||||||||||| ||||||||||||||||||||  ||||||||  ||||||   | ||||||| ||||| || ||||| |||||    
T  18679495 ttccaaaataacaataaaaacatggagcggttgcatcaatggaagttagctctgaccgaagctgctaacttgtccggctaccattt 18679410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 49 - 170
Target Start/End: Complemental strand, 18699493 - 18699372
Alignment:
Q  49 aactatgctacttcttcattttgtctagatgaacttgtccatatcattcactacttcaaggaaaagagtcgtctcgttcttccagttttctatgatgtgg 148  Q
    ||||||||  |||||||||||||| | || |||||||| || |||||||||| || ||||  |||  ||||||||||| | || ||||||||||  || |    
T  18699493 aactatgcctcttcttcattttgtttggacgaacttgttcacatcattcactgctacaagacaaaaggtcgtctcgttttgcctgttttctatggcgtag 18699394  T
Q  149 aaccttctcacgtacgacatca 170  Q
    | ||| ||||| ||||||||||    
T  18699393 atcctactcacatacgacatca 18699372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 49 - 170
Target Start/End: Complemental strand, 18731597 - 18731476
Alignment:
Q  49 aactatgctacttcttcattttgtctagatgaacttgtccatatcattcactacttcaaggaaaagagtcgtctcgttcttccagttttctatgatgtgg 148  Q
    ||||||||  |||||||||||||| | || ||||||||||| ||||| |||| || ||||  |||| ||||||| ||| | || ||||||||||  ||||    
T  18731597 aactatgcctcttcttcattttgtttggacgaacttgtccacatcatgcactgctacaagacaaagggtcgtcttgttttgcctgttttctatggcgtgg 18731498  T
Q  149 aaccttctcacgtacgacatca 170  Q
    | |||  |||| ||||||||||    
T  18731497 atcctagtcacatacgacatca 18731476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 49 - 267
Target Start/End: Complemental strand, 58388 - 58170
Alignment:
Q  49 aactatgctacttcttcattttgtctagatgaacttgtccatatcattcactacttcaaggaaaagagtcgtctcgttcttccagttttctatgatgtgg 148  Q
    ||||||||| |||||||||||||  |  | ||||||||||| |||||||||| |||| ||||| |  | || || ||| | ||| |||||||||| ||||    
T  58388 aactatgcttcttcttcattttgcttgaacgaacttgtccacatcattcactgcttcgaggaatatgggcgcctagttttgccaattttctatgacgtgg 58289  T
Q  149 aaccttctcacgtacgacatcagactaataggtatggtgcagcactttctgagtttgaagaaaggttccaaaataacaagaaaaacatggagcggttgca 248  Q
    ||||||||||||| ||||||||   |   || ||||||  ||||||| | |||  |   || ||||||||||||| |||| | | ||| ||| |||||||    
T  58288 aaccttctcacgtgcgacatcaagatggaagttatggtaaagcacttgccgagcatattgagaggttccaaaatagcaaggatagcatagagaggttgca 58189  T
Q  249 gaaatggaagacagctctt 267  Q
    |||||||||||||||||||    
T  58188 gaaatggaagacagctctt 58170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 49 - 258
Target Start/End: Complemental strand, 268450 - 268241
Alignment:
Q  49 aactatgctacttcttcattttgtctagatgaacttgtccatatcattcactacttcaaggaaaagagtcgtctcgttcttccagttttctatgatgtgg 148  Q
    ||||||||  |||||||||||||| | || ||||||||||| |||||||||| || |||| ||||| |||||||| || | || || |||||||  ||||    
T  268450 aactatgcctcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagaaaaagggtcgtctcattttgcccgtcttctatggcgtgg 268351  T
Q  149 aaccttctcacgtacgacatcagactaataggtatggtgcagcactttctgagtttgaagaaaggttccaaaataacaagaaaaacatggagcggttgca 248  Q
    | ||| ||||| |||||||||| | |   || ||||||| |   ||  || ||   ||||| || |||||||||| ||||||||||||||||||||||||    
T  268350 atcctactcacatacgacatcaaagtgggagttatggtgaacatctcactaagcacgaagagagtttccaaaatagcaagaaaaacatggagcggttgca 268251  T
Q  249 gaaatggaag 258  Q
      ||||||||    
T  268250 tcaatggaag 268241  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 211 - 298
Target Start/End: Complemental strand, 28127610 - 28127523
Alignment:
Q  211 aggttccaaaataacaagaaaaacatggagcggttgcagaaatggaagacagctctttaccaagctgcgaacttatctggctatcatt 298  Q
    |||||||||||||||||||||||||||||||| |||||  ||||||||| ||||||   ||||||||| ||||| || ||||| ||||    
T  28127610 aggttccaaaataacaagaaaaacatggagcgattgcaccaatggaagatagctctaacccaagctgctaacttgtccggctaccatt 28127523  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 211 - 298
Target Start/End: Complemental strand, 28164294 - 28164207
Alignment:
Q  211 aggttccaaaataacaagaaaaacatggagcggttgcagaaatggaagacagctctttaccaagctgcgaacttatctggctatcatt 298  Q
    |||||||||||||||||||||||||||||||| |||||  ||||||||| ||||||   ||||||||| ||||| || ||||| ||||    
T  28164294 aggttccaaaataacaagaaaaacatggagcgattgcaccaatggaagatagctctaacccaagctgctaacttgtccggctaccatt 28164207  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 49 - 258
Target Start/End: Complemental strand, 29273876 - 29273667
Alignment:
Q  49 aactatgctacttcttcattttgtctagatgaacttgtccatatcattcactacttcaaggaaaagagtcgtctcgttcttccagttttctatgatgtgg 148  Q
    ||||||||  |||||||||||||| | || ||||||||||| |||||||||| || ||||  |||| |||||||| || | || || |||||||  ||||    
T  29273876 aactatgcctcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaagggtcgtctcattttgcctgtcttctatggcgtgg 29273777  T
Q  149 aaccttctcacgtacgacatcagactaataggtatggtgcagcactttctgagtttgaagaaaggttccaaaataacaagaaaaacatggagcggttgca 248  Q
    | ||| ||||| |||||||||| | |   || ||||||| |   ||  || |||  ||||| || |||||||||| ||||||||||||||| ||||||||    
T  29273776 atcctactcacatacgacatcaaagtgggagttatggtgaacatctcactaagtacgaagagagtttccaaaatagcaagaaaaacatggatcggttgca 29273677  T
Q  249 gaaatggaag 258  Q
      ||||||||    
T  29273676 tcaatggaag 29273667  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 87
Target Start/End: Original strand, 31903893 - 31903970
Alignment:
Q  10 attgaagactccaggattgcagttattgtattctcaaagaactatgctacttcttcattttgtctagatgaacttgtc 87  Q
    |||||||| || ||||||||  |||||||  |||| || ||||||||| |||||||||||||  || |||||||||||    
T  31903893 attgaagagtctaggattgccattattgtgctctctaaaaactatgcttcttcttcattttgcttacatgaacttgtc 31903970  T

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Target: scaffold0349 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 59 - 153
Target Start/End: Complemental strand, 3517 - 3423
Alignment:
Q  59 cttcttcattttgtctagatgaacttgtccatatcattcactacttcaaggaaaagagtcgtctcgttcttccagttttctatgatgtggaacct 153  Q
    |||||||||||||| | || ||||||||||| |||||||||| || ||||  |||| |||| |||||||| || ||||| | || ||||||||||    
T  3517 cttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaagggtcgcctcgttctgcctgttttatttggtgtggaacct 3423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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