View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21151_low_18 (Length: 280)
Name: NF21151_low_18
Description: NF21151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21151_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 20 - 269
Target Start/End: Original strand, 16991611 - 16991860
Alignment:
| Q |
20 |
atgtccacctttttaaggctccatatccgttcacgaggtgtctccacagagactggtggtggccgtgtatgatgctgatcaacaccatcgtcgttgacct |
119 |
Q |
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| T |
16991611 |
atgtccacctttttaaggctccatatccgttcacgaggtgtctccacagagactggtggtggccgtgtatgatgctgatcaacaccatcgtcgttgacct |
16991710 |
T |
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| Q |
120 |
ctaacacaattgaatcattgttcatgaaattctttctttcccaatagcatttaacaaggagttcgagtgaacctaactccttgcgcgtaaaatgtgtgtt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |
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| T |
16991711 |
ctaacacaattgaatcattgttcatgaaattctttctttcccaatagcatttaacaaggagttcgagtgaacgtaactccttgcgcgtaaaatgtgtgct |
16991810 |
T |
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| Q |
220 |
tttgatgctttgattcaatccattgttatcaattgattccttcttctcac |
269 |
Q |
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| T |
16991811 |
tttgacgctttgattcaatccattgttatcagttgattccttcttctcac |
16991860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 23 - 266
Target Start/End: Original strand, 16967473 - 16967716
Alignment:
| Q |
23 |
tccacctttttaaggctccatatccgttcacgaggtgtctccacagagactggtggtggccgtgtatgatgctgatcaacaccatcgtcgttgacctcta |
122 |
Q |
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| T |
16967473 |
tccacctttttgaggctccatatccgttcatgaggtgtgtccacagaaactggtggtggctgtgtatcttgccgatcaacgcaatcttcattgacctcca |
16967572 |
T |
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| Q |
123 |
acacaattgaatcattgttcatgaaattctttctttcccaatagcatttaacaaggagttcgagtgaacctaactccttgcgcgtaaaatgtgtgttttt |
222 |
Q |
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| T |
16967573 |
acacaattgaatctttgttcatggtattctttctttcccaatagcattgagcaaggagttcgagtgaacgcaactcctttggcgtaaaatgtgggctttt |
16967672 |
T |
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| Q |
223 |
gatgctttgattcaatccattgttatcaattgattccttcttct |
266 |
Q |
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| T |
16967673 |
gacgctttgattcaaacaactgttatcaatagattccttcttct |
16967716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 27 - 268
Target Start/End: Original strand, 16976283 - 16976524
Alignment:
| Q |
27 |
cctttttaaggctccatatccgttcacgaggtgtctccacagagactggtggtggccgtgtatgatgctgatcaacaccatcgtcgttgacctctaacac |
126 |
Q |
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| T |
16976283 |
cctttttgaggctccatatccgttcatgaggtgtgtccacagaaactggtggtggctgtgtatcttgccgatcaacgcaatcttcattgacctccatcac |
16976382 |
T |
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| Q |
127 |
aattgaatcattgttcatgaaattctttctttcccaatagcatttaacaaggagttcgagtgaacctaactccttgcgcgtaaaatgtgtgtttttgatg |
226 |
Q |
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| T |
16976383 |
aattgaatctttgttcatggtattctttctttcccaatagcattgagcaaggagttcgagtgaacgcaactcctttggcataaaatgtgggtttttgacg |
16976482 |
T |
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| Q |
227 |
ctttgattcaatccattgttatcaattgattccttcttctca |
268 |
Q |
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| T |
16976483 |
ctttgattcaaaccatggttatcaatagattccttcttctca |
16976524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 166 - 266
Target Start/End: Original strand, 17007266 - 17007366
Alignment:
| Q |
166 |
gcatttaacaaggagttcgagtgaacctaactccttgcgcgtaaaatgtgtgtttttgatgctttgattcaatccattgttatcaattgattccttcttc |
265 |
Q |
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||||||| |||| ||||| ||| |||| |||||||| || ||||| ||| | |||||| |||||||||||| |||||||||||||| |||||||||||| |
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| T |
17007266 |
gcatttaccaagcagttcaagtaaacccaactccttcggcataaaaagtgagcttttgaagctttgattcaaaccattgttatcaatagattccttcttc |
17007365 |
T |
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| Q |
266 |
t |
266 |
Q |
| |
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| |
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| T |
17007366 |
t |
17007366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 62
Target Start/End: Original strand, 17007123 - 17007162
Alignment:
| Q |
23 |
tccacctttttaaggctccatatccgttcacgaggtgtct |
62 |
Q |
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| T |
17007123 |
tccacctttttaaggctccatatccgttcatgaggtgtct |
17007162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 180
Target Start/End: Complemental strand, 10602544 - 10602420
Alignment:
| Q |
56 |
ggtgtctccacagagactggtggtggccgtgtatgatgctgatcaacaccatcgtcgttgacctctaacacaattgaatcattgttcatgaaattctttc |
155 |
Q |
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|||||||||||||| || ||| ||||| |||||| || ||||||| ||||| || | | ||| |||| | |||||||||| |||||| |||| | | |
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| T |
10602544 |
ggtgtctccacagaaaccggttgtggctgtgtatcttgtcgatcaacgccatcctcctcaaactcgaacaaagttgaatcattcttcatggtattcatac |
10602445 |
T |
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| Q |
156 |
tttcccaatagcatttaacaaggag |
180 |
Q |
| |
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| T |
10602444 |
tgtcccaatagcatttagcaaggag |
10602420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 23 - 269
Target Start/End: Complemental strand, 35263764 - 35263518
Alignment:
| Q |
23 |
tccacctttttaaggctccatatccgttcacgaggtgtctccacagagactggtggtggccgtgtatgatgctgatcaacaccatcgtcgttgacctcta |
122 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||| |||||| |
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| T |
35263764 |
tccacctttttaaggctccatatccgttcacgaggtgtctccacagagactggtggtggccatgtatcttgctgaccaacaccatcgtcgttatcctcta |
35263665 |
T |
|
| Q |
123 |
acacaattgaatcattgttcatgaaattctttctttcccaatagcatttaacaaggagttcgagtgaacctaactccttgcgcgtaaaatgtgtgttttt |
222 |
Q |
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||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||| |
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| T |
35263664 |
acacaattgaatcattgttaatggtattctttctttcccaatagcatttaacaaggagttcgagtgaacgcaactccttccgcgtaaaatgtgtgctttt |
35263565 |
T |
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| Q |
223 |
gatgctttgattcaatccattgttatcaattgattccttcttctcac |
269 |
Q |
| |
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|| |||||||||||| |||||| ||||||| |||||||||||||||| |
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| T |
35263564 |
gacgctttgattcaaaccattggtatcaatagattccttcttctcac |
35263518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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