View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21151_low_19 (Length: 280)
Name: NF21151_low_19
Description: NF21151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21151_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 7 - 265
Target Start/End: Complemental strand, 1423641 - 1423396
Alignment:
| Q |
7 |
gaagaaacggtcattgcaacaattcaaatcctttggaagcaaaa-gtagatgatttaactatttggatcatgtatactctttcaaagatattatgatcat |
105 |
Q |
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| T |
1423641 |
gaagaaacggtcattgcaacaattcaaatcctttggaagcaaaaagtagatgatttaactattaggatcatgtatactctttaagagatattatgatcat |
1423542 |
T |
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| Q |
106 |
atttattttaatttaaaataaatatctgaacactattaactctaaattaaatcatacaaaacctaaagaatgaaagatggttcatatatagtttttgaaa |
205 |
Q |
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| T |
1423541 |
atttattttaa-----aataaatatctgaacactattaactctaaat-----catacaaaacctaaagaatgagagatggttcata----gtttttgaaa |
1423456 |
T |
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| Q |
206 |
tgatgagattcttacagggaacacttggtagtagtaatctcccattgtccacaagttgtt |
265 |
Q |
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| T |
1423455 |
tgatgagattcttacaggaaacacttggtagtagtaatctcccattgtccacaagttgtt |
1423396 |
T |
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Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 173 - 250
Target Start/End: Original strand, 2816830 - 2816903
Alignment:
| Q |
173 |
gaatgaaagatggttcatatatagtttttgaaatgatgagattcttacagggaacacttggtagtagtaatctcccat |
250 |
Q |
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| T |
2816830 |
gaatgaaagatggttcata----gtttttgaaatcaagagattcttacagggaacactaggtagtagtaatctcccat |
2816903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 112
Target Start/End: Original strand, 2816659 - 2816752
Alignment:
| Q |
17 |
tcattgcaacaattcaaatcctttggaagcaaaagtagatgatttaactatttggatcatgtatactctttcaaagatattatgatcatatttatt |
112 |
Q |
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| T |
2816659 |
tcatagcaacaattcaaatcctctggaagcaaaagtgtatgatttaactacttggatga--cactctctttcaaagatattgtgatcgtatttatt |
2816752 |
T |
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