View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21151_low_20 (Length: 258)
Name: NF21151_low_20
Description: NF21151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21151_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 16991884 - 16992130
Alignment:
| Q |
1 |
ttataatcccttcttttgttctccattgttttcggtttatttgattccttcatcttttcttcctttatttgaaatgaagaaactcctccatcatctaagc |
100 |
Q |
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||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |
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| T |
16991884 |
ttataatcccttcttttgttctccattgttttctgtttatctgattccttcatcttttcttgctttatttgaaatgaagaaactcctccaacatctaagc |
16991983 |
T |
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| Q |
101 |
ctttaacaaattgatcttttcctcgatcagaatcatcaacattttccttggatttgttttctgatttggcattcacttcaacattcacacattcatcaga |
200 |
Q |
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|||||||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16991984 |
ctttaacaaattgatcttttcctccatcagagtcgccaacattttccttggatttgttttctgatttggcattcacttcaacattcacacattcatcaga |
16992083 |
T |
|
| Q |
201 |
gagatttttcaatttcccttctacactctttggtttcagtgtctctg |
247 |
Q |
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||||||||||| ||||||||| ||||||||| ||||||||||||||| |
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| T |
16992084 |
gagatttttcactttcccttccacactctttcgtttcagtgtctctg |
16992130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 48 - 247
Target Start/End: Original strand, 16968285 - 16968484
Alignment:
| Q |
48 |
cttcatcttttcttcctttatttgaaatgaagaaactcctccatcatctaagcctttaacaaattgatcttttcctcgatcagaatcatcaacattttcc |
147 |
Q |
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|||||||| ||||| |||| |||||| ||| |||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |
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| T |
16968285 |
cttcatctcttcttgctttttttgaactgatgaaattcctccaacatctaagcctttaacaaattgatattttcctcgatcagaatcaccaacattttcc |
16968384 |
T |
|
| Q |
148 |
ttggatttgttttctgatttggcattcacttcaacattcacacattcatcagagagatttttcaatttcccttctacactctttggtttcagtgtctctg |
247 |
Q |
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| T |
16968385 |
ttggatttgttttttgatttggcattcactcctatattcacactttcatcagagagatttttcgctttcccttctacactctttggtttcagtgtctctg |
16968484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 16976624 - 16976694
Alignment:
| Q |
1 |
ttataatcccttcttttgttctccattgttttcggtttatttgattccttcatcttttcttcctttatttg |
71 |
Q |
| |
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||||| ||||||| ||||||||||||| ||||| |||| | |||||||||||||||||||| |||| |||| |
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| T |
16976624 |
ttatagtcccttcctttgttctccattattttctgtttctctgattccttcatcttttcttgctttgtttg |
16976694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 10602319 - 10602216
Alignment:
| Q |
1 |
ttataatcccttcttttgttctccattgttttcggtttatttgattccttcatcttttcttcctttatttgaaatgaagaaactcctccatcatctaagc |
100 |
Q |
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||||||||||||| ||||||||||| ||||| ||||| ||||||||| ||| |||||| |||| |||||| ||||||| || ||| ||||||| | |
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| T |
10602319 |
ttataatcccttcctttgttctccaccattttctgtttacgtgattcctttatcatttcttgctttgtttgaaccaaagaaacgcccccagcatctaaac |
10602220 |
T |
|
| Q |
101 |
cttt |
104 |
Q |
| |
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|||| |
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| T |
10602219 |
cttt |
10602216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 16967749 - 16967852
Alignment:
| Q |
1 |
ttataatcccttcttttgttctccattgttttcggtttatttgattccttcatcttttcttcctttatttgaaatgaagaaactcctccatcatctaagc |
100 |
Q |
| |
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||||||||||||| ||| |||||| | ||||| |||||||||||||||||||| ||||| ||| |||||| || |||||||| ||| || |||| | |
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| T |
16967749 |
ttataatcccttcctttattctccgtcattttctctttatttgattccttcatctcttcttgcttcgtttgaaccgatgaaactccaccaacacctaaac |
16967848 |
T |
|
| Q |
101 |
cttt |
104 |
Q |
| |
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|||| |
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|
| T |
16967849 |
cttt |
16967852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 126; Significance: 5e-65; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 35263494 - 35263305
Alignment:
| Q |
1 |
ttataatcccttcttttgttctccattgttttcggtttatttgattccttcatcttttcttcctttatttgaaatgaagaaactcctccatcatctaagc |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||| |||||| ||||||||||||| |||| | |||| |||||||||||||||| ||||||||| |
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| T |
35263494 |
ttataatcccttcttttgttctccattgttttctgtttatctgattcattcatcttttcttgctttctatgaactgaagaaactcctccaacatctaagc |
35263395 |
T |
|
| Q |
101 |
ctttaacaaattgatcttttcctcgatcagaatcatcaacattttccttggatttgttttctgatttggcattcacttcaacattcacac |
190 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| || ||| |||||||||||| |||||| ||||| |
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| T |
35263394 |
ctttaacaaattgatcttttcctcgatcagaatcaccaacattttctttggatttggcttttgacttggcattcactccaacatccacac |
35263305 |
T |
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