View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21151_low_21 (Length: 257)
Name: NF21151_low_21
Description: NF21151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21151_low_21 |
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Alignment Details
Target: chr6 (Bit Score: 138; Significance: 3e-72; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 13 - 170
Target Start/End: Original strand, 7563092 - 7563249
Alignment:
| Q |
13 |
tagggaaccgatgaagctgccaaagtttacggaggaggaggaccgcaatggagggagttgttgggaaatggtgaggccgttaaggcggaggtggacgatt |
112 |
Q |
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| T |
7563092 |
tagggatccgatgaagctgccaaagtttacggaggaggaggaccgcgatggagggagttgttgggaaatggtgaggccgttaaggcggaggtggacaatt |
7563191 |
T |
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| Q |
113 |
atgagggctttgaagacttcatttggatgcattcatattgtttaatttaatttaggag |
170 |
Q |
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| T |
7563192 |
atgagggctttgaaaacttcatttggatgcattcatattgtttagtttaatttaggag |
7563249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 13 - 161
Target Start/End: Original strand, 7558961 - 7559109
Alignment:
| Q |
13 |
tagggaaccgatgaagctgccaaagtttacggaggaggaggaccgcaatggagggagttgttgggaaatggtgaggccgttaaggcggaggtggacgatt |
112 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
7558961 |
tagggagccgatgaagctgccaaagtttacggaggaggaggactgcaatggagggagttgttgggaaatggtgaggccgttaaggcggaggtggacaatt |
7559060 |
T |
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| Q |
113 |
atgagggctttgaagacttcatttggatgcattcatattgtttaattta |
161 |
Q |
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| T |
7559061 |
atgagggctttgaaggcttcatttggatgcattcatattgtttagttta |
7559109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 13 - 162
Target Start/End: Original strand, 7568152 - 7568301
Alignment:
| Q |
13 |
tagggaaccgatgaagctgccaaagtttacggaggaggaggaccgcaatggagggagttgttgggaaatggtgaggccgttaaggcggaggtggacgatt |
112 |
Q |
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| T |
7568152 |
tagggaaccgatgaagctgccgaagtttacggagcaggaggaagttggtggagagagtcgttgggaaatggtgagaccgttaagacggaggtggacgatt |
7568251 |
T |
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| Q |
113 |
atgagggctttgaagacttcatttggatgcattcatattgtttaatttaa |
162 |
Q |
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| T |
7568252 |
atgagtgctttgaaggcttcgtttggatgcattcacattctttagtttaa |
7568301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 242
Target Start/End: Original strand, 7559167 - 7559201
Alignment:
| Q |
208 |
atgttgaaattcattgatttaacaactgattttgt |
242 |
Q |
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| T |
7559167 |
atgttggaattcattgatttaacaactgattttgt |
7559201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 240
Target Start/End: Original strand, 7563299 - 7563331
Alignment:
| Q |
208 |
atgttgaaattcattgatttaacaactgatttt |
240 |
Q |
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| T |
7563299 |
atgttggaattcattgatttaacaactgatttt |
7563331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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