View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21151_low_24 (Length: 240)

Name: NF21151_low_24
Description: NF21151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21151_low_24
NF21151_low_24
[»] chr1 (5 HSPs)
chr1 (1-143)||(14978043-14978184)
chr1 (144-190)||(25468539-25468585)
chr1 (157-191)||(32039158-32039192)
chr1 (144-180)||(168919-168955)
chr1 (144-180)||(46812174-46812210)
[»] scaffold0085 (2 HSPs)
scaffold0085 (144-225)||(15111-15192)
scaffold0085 (144-172)||(15052-15080)
[»] chr4 (4 HSPs)
chr4 (144-225)||(16903585-16903666)
chr4 (144-218)||(42059374-42059448)
chr4 (144-191)||(9365793-9365839)
chr4 (140-185)||(26279197-26279242)
[»] chr2 (1 HSPs)
chr2 (150-225)||(15774919-15774994)
[»] chr6 (1 HSPs)
chr6 (144-225)||(5861915-5861996)
[»] scaffold0002 (1 HSPs)
scaffold0002 (145-225)||(428843-428923)
[»] chr8 (1 HSPs)
chr8 (150-189)||(31603006-31603045)
[»] chr7 (1 HSPs)
chr7 (144-188)||(5930954-5930998)


Alignment Details
Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 14978043 - 14978184
Alignment:
Q  1 attagaatcgaaatataagatgttttagatccaaattcatttggtaaaaatgtaaatactttgacaatgacattgtaaaaatactgtcacaactatgata 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  ||||||||||||| | | ||||||||||||||||    
T  14978043 attagaatcgaaatataagatgttttagatccaaattcatttggtaaaaatgtaaaaactttgattatgacattgtaaataca-tgtcacaactatgata 14978141  T
Q  101 taagtaagactaaatcaaatctttttaacgataaatgattcat 143  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  14978142 taagtaagactaaatcaaatctttttaacgataaatgattcat 14978184  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 190
Target Start/End: Original strand, 25468539 - 25468585
Alignment:
Q  144 gattcattgacaccaaatctcaaccgtcaatctattttaatcaaagg 190  Q
    |||||||||||||||||||||||||||| ||   |||||||||||||    
T  25468539 gattcattgacaccaaatctcaaccgtcgattgtttttaatcaaagg 25468585  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 191
Target Start/End: Complemental strand, 32039192 - 32039158
Alignment:
Q  157 caaatctcaaccgtcaatctattttaatcaaaggc 191  Q
    |||||||||||||||||| ||||||||||||||||    
T  32039192 caaatctcaaccgtcaatttattttaatcaaaggc 32039158  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 180
Target Start/End: Original strand, 168919 - 168955
Alignment:
Q  144 gattcattgacaccaaatctcaaccgtcaatctattt 180  Q
    |||||||||||||||||||||||||||  ||||||||    
T  168919 gattcattgacaccaaatctcaaccgtttatctattt 168955  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 180
Target Start/End: Complemental strand, 46812210 - 46812174
Alignment:
Q  144 gattcattgacaccaaatctcaaccgtcaatctattt 180  Q
    ||||| |||||||||||||||||||||| ||||||||    
T  46812210 gattcgttgacaccaaatctcaaccgtctatctattt 46812174  T

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Target: scaffold0085 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 144 - 225
Target Start/End: Original strand, 15111 - 15192
Alignment:
Q  144 gattcattgacaccaaatctcaaccgtcaatctattttaatcaaaggccagtaatattctctaaattaactcacgttaatgt 225  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||    
T  15111 gattcattgacaccaaatctcaaccgtcaatctattttaatcaaaggctagtaatattctctaaattgactcacgctaatgt 15192  T

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Target: scaffold0085; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 172
Target Start/End: Original strand, 15052 - 15080
Alignment:
Q  144 gattcattgacaccaaatctcaaccgtca 172  Q
    |||||||||||||||||||||||||||||    
T  15052 gattcattgacaccaaatctcaaccgtca 15080  T

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Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 144 - 225
Target Start/End: Complemental strand, 16903666 - 16903585
Alignment:
Q  144 gattcattgacaccaaatctcaaccgtcaatctattttaatcaaaggccagtaatattctctaaattaactcacgttaatgt 225  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||    
T  16903666 gattcgttgacaccaaatctcaaccgtcaatctattttaatcaaaggctagtaatattctctaaattgactcacgctaatgt 16903585  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 144 - 218
Target Start/End: Complemental strand, 42059448 - 42059374
Alignment:
Q  144 gattcattgacaccaaatctcaaccgtcaatctattttaatcaaaggccagtaatattctctaaattaactcacg 218  Q
    ||||| |||||||||||| ||||||||| ||||||||||||||||||| | |||||||||||||||| |||||||    
T  42059448 gattcgttgacaccaaatttcaaccgtcgatctattttaatcaaaggctaataatattctctaaattgactcacg 42059374  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 191
Target Start/End: Complemental strand, 9365839 - 9365793
Alignment:
Q  144 gattcattgacaccaaatctcaaccgtcaatctattttaatcaaaggc 191  Q
    ||||||||||||||||||| ||||||||||| | ||||||||||||||    
T  9365839 gattcattgacaccaaatcacaaccgtcaat-ttttttaatcaaaggc 9365793  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 185
Target Start/End: Original strand, 26279197 - 26279242
Alignment:
Q  140 tcatgattcattgacaccaaatctcaaccgtcaatctattttaatc 185  Q
    ||||||||| ||||||||||||||||||| |||||||  |||||||    
T  26279197 tcatgattcgttgacaccaaatctcaaccatcaatctcatttaatc 26279242  T

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Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 150 - 225
Target Start/End: Complemental strand, 15774994 - 15774919
Alignment:
Q  150 ttgacaccaaatctcaaccgtcaatctattttaatcaaaggccagtaatattctctaaattaactcacgttaatgt 225  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||    
T  15774994 ttgacaccaaatctcaaccgtcaatctattttaatcaaaggctagtaatattctctaaattgactcacgctaatgt 15774919  T

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Target: chr6 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 144 - 225
Target Start/End: Original strand, 5861915 - 5861996
Alignment:
Q  144 gattcattgacaccaaatctcaaccgtcaatctattttaatcaaaggccagtaatattctctaaattaactcacgttaatgt 225  Q
    ||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||    
T  5861915 gattcgttgacaccaaatctcaaccatcaatctattttaatcaaaggctagtaatattctctaaattgactcacgctaatgt 5861996  T

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Target: scaffold0002 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 145 - 225
Target Start/End: Complemental strand, 428923 - 428843
Alignment:
Q  145 attcattgacaccaaatctcaaccgtcaatctattttaatcaaaggccagtaatattctctaaattaactcacgttaatgt 225  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||| ||||||| ||||||    
T  428923 attcgttgacaccaaatctcaaccgccaatctattttaatcaaaggctaataatattctctaaattgactcacgctaatgt 428843  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 189
Target Start/End: Complemental strand, 31603045 - 31603006
Alignment:
Q  150 ttgacaccaaatctcaaccgtcaatctattttaatcaaag 189  Q
    ||||||||||||||||||||||||| || |||||||||||    
T  31603045 ttgacaccaaatctcaaccgtcaatttactttaatcaaag 31603006  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 188
Target Start/End: Complemental strand, 5930998 - 5930954
Alignment:
Q  144 gattcattgacaccaaatctcaaccgtcaatctattttaatcaaa 188  Q
    |||||||||||||||||||||||||||| || |  ||||||||||    
T  5930998 gattcattgacaccaaatctcaaccgtctattttatttaatcaaa 5930954  T

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