View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21151_low_25 (Length: 236)
Name: NF21151_low_25
Description: NF21151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21151_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 26507556 - 26507775
Alignment:
| Q |
1 |
caaaaacagcaatagcaacccccattacaattattgaataattaataaccatttcacacccaaatctcttgtatgatcctgaaatcttcaagtagcaaat |
100 |
Q |
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| T |
26507556 |
caaaaacagcaatagcaacccccattacaattattgaataattaataaccatttcacacccaaatctcttgtatgatcctgaaatcttcaagtagcaaat |
26507655 |
T |
|
| Q |
101 |
tgatggcactaaaattgaagctgagacacttaacaatgctccaacaagtgacataagatatccaaataagggaatggtcacagctatagtaagagaacct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26507656 |
tgatggcactaaaattgaagctgagacacttaacaatgctccaacaagtgacataagatatccaaataagggaatggtcacagctatagtaagagaacct |
26507755 |
T |
|
| Q |
201 |
actaataaagatgtactaat |
220 |
Q |
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|||||||||||||||||||| |
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| T |
26507756 |
actaataaagatgtactaat |
26507775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 26478288 - 26478507
Alignment:
| Q |
1 |
caaaaacagcaatagcaacccccattacaattattgaataattaataaccatttcacacccaaatctcttgtatgatcctgaaatcttcaagtagcaaat |
100 |
Q |
| |
|
|||||| ||||||||||||||||| |||||| |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
26478288 |
caaaaatagcaatagcaacccccactacaatgattgaataattaataaccatttcatacccaaatctcttgtatgcacctgaaatcttcaagtaacaaat |
26478387 |
T |
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| Q |
101 |
tgatggcactaaaattgaagctgagacacttaacaatgctccaacaagtgacataagatatccaaataagggaatggtcacagctatagtaagagaacct |
200 |
Q |
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|||||||||||||||||||||||||| | ||| ||||||||||||||||||||||| ||| ||||||| ||||| | ||| |||||| |||||||| | |
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| T |
26478388 |
tgatggcactaaaattgaagctgagatgcataataatgctccaacaagtgacataaggtatgcaaataaaggaatagccactgctataataagagaaatt |
26478487 |
T |
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| Q |
201 |
actaataaagatgtactaat |
220 |
Q |
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| ||| ||||| |||||||| |
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| T |
26478488 |
attaacaaagacgtactaat |
26478507 |
T |
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