View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21151_low_29 (Length: 209)

Name: NF21151_low_29
Description: NF21151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21151_low_29
NF21151_low_29
[»] chr6 (47 HSPs)
chr6 (5-209)||(27214252-27214450)
chr6 (5-209)||(27234778-27234976)
chr6 (1-193)||(26811357-26811546)
chr6 (1-157)||(26949542-26949698)
chr6 (5-168)||(25071529-25071692)
chr6 (1-160)||(26848538-26848697)
chr6 (1-157)||(26974933-26975089)
chr6 (1-166)||(26635562-26635727)
chr6 (1-166)||(26741528-26741693)
chr6 (5-179)||(27665271-27665445)
chr6 (1-157)||(26959046-26959202)
chr6 (6-104)||(26617260-26617358)
chr6 (6-104)||(26723188-26723286)
chr6 (13-143)||(27229127-27229257)
chr6 (1-143)||(27698644-27698786)
chr6 (1-143)||(27724995-27725137)
chr6 (1-143)||(28781034-28781176)
chr6 (1-143)||(28786173-28786315)
chr6 (1-143)||(28792294-28792436)
chr6 (1-143)||(27611152-27611294)
chr6 (1-143)||(27718529-27718671)
chr6 (13-119)||(27531359-27531465)
chr6 (13-143)||(27604867-27604997)
chr6 (13-107)||(29825958-29826052)
chr6 (13-136)||(31284190-31284313)
chr6 (13-143)||(26802337-26802467)
chr6 (13-108)||(27593182-27593277)
chr6 (13-155)||(28234447-28234589)
chr6 (17-108)||(26622906-26622997)
chr6 (17-108)||(26728884-26728975)
chr6 (13-108)||(27338227-27338322)
chr6 (13-108)||(27398967-27399062)
chr6 (13-108)||(27678876-27678971)
chr6 (13-155)||(26936977-26937119)
chr6 (13-155)||(28325364-28325506)
chr6 (19-84)||(28181068-28181133)
chr6 (19-84)||(28185320-28185385)
chr6 (13-101)||(25481679-25481767)
chr6 (13-101)||(25579656-25579744)
chr6 (13-108)||(26655919-26656014)
chr6 (13-108)||(26761890-26761985)
chr6 (49-108)||(27677812-27677871)
chr6 (49-155)||(28098567-28098673)
chr6 (46-107)||(26861547-26861608)
chr6 (46-107)||(26884094-26884155)
chr6 (19-108)||(28139471-28139560)
chr6 (13-101)||(26142802-26142890)
[»] chr2 (1 HSPs)
chr2 (1-156)||(17993834-17993989)
[»] scaffold1254 (1 HSPs)
scaffold1254 (1-143)||(67-209)
[»] scaffold0419 (1 HSPs)
scaffold0419 (1-143)||(7420-7562)
[»] scaffold0349 (2 HSPs)
scaffold0349 (1-143)||(3572-3714)
scaffold0349 (1-143)||(14505-14647)
[»] scaffold0277 (2 HSPs)
scaffold0277 (1-143)||(13782-13924)
scaffold0277 (13-119)||(4833-4939)
[»] chr5 (1 HSPs)
chr5 (13-98)||(16688951-16689036)
[»] scaffold0019 (1 HSPs)
scaffold0019 (13-95)||(58444-58526)
[»] scaffold0038 (2 HSPs)
scaffold0038 (13-155)||(34608-34750)
scaffold0038 (13-155)||(116679-116821)
[»] chr4 (4 HSPs)
chr4 (45-131)||(18699581-18699667)
chr4 (45-94)||(18655658-18655707)
chr4 (45-108)||(18724266-18724329)
chr4 (45-94)||(18731685-18731734)
[»] chr1 (1 HSPs)
chr1 (46-94)||(268539-268587)


Alignment Details
Target: chr6 (Bit Score: 142; Significance: 1e-74; HSPs: 47)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 5 - 209
Target Start/End: Complemental strand, 27214450 - 27214252
Alignment:
Q  5 ggagcgaaggtgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggttcggattcccatgtcagaaagagctttgtagagattaccggtgaa 104  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| |||||||||| |||||||||||||||||    
T  27214450 ggagcgaagatgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggttcggattcctttgtcacaaagagctttatagagattaccggtgaa 27214351  T
Q  105 accgcgtcgagtgtcggtacccctgaaactaatgaacacgtcatagctgaaattatgagagaggcgggaggaggacgaggaagaagaagaaggtggttgc 204  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||      || |||| ||||||||||||||||    
T  27214350 accgtgtcgagtgtcggtacccctgaaactaatgaacacgtcatagctgaaattattagagaggccggag------gaagaagtagaagaaggtggttgc 27214257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 5 - 209
Target Start/End: Original strand, 27234778 - 27234976
Alignment:
Q  5 ggagcgaaggtgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggttcggattcccatgtcagaaagagctttgtagagattaccggtgaa 104  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| |||||||||| |||||||||||||||||    
T  27234778 ggagcgaagatgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggttcggattcctttgtcacaaagagctttatagagattaccggtgaa 27234877  T
Q  105 accgcgtcgagtgtcggtacccctgaaactaatgaacacgtcatagctgaaattatgagagaggcgggaggaggacgaggaagaagaagaaggtggttgc 204  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||      || |||| ||||||||||||||||    
T  27234878 accgtgtcgagtgtcggtacccctgaaactaatgaacacgtcatagctgaaattattagagaggccggag------gaagaagtagaagaaggtggttgc 27234971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 26811546 - 26811357
Alignment:
Q  1 ttgaggagcgaaggtgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggttcggattcccatgtcagaaagagctttgtagagattaccgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| |||||||||| ||||||| |||||    
T  26811546 ttgaggagcgaaggtgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggttcggattcctttgtcacaaagagctttatagagatgaccgg 26811447  T
Q  101 tgaaaccgcgtcgagtgtcggtacccctgaaactaatgaacacgtcatagctgaaattatgagagaggcgggaggaggacgaggaagaagaag 193  Q
    |||| ||   |||||||||| ||||||||||||||||||||||||||||| |||||| || |||||   |||||||||||||||| |||||||    
T  26811446 tgaagccagatcgagtgtcgatacccctgaaactaatgaacacgtcatagatgaaatcattagaga---gggaggaggacgaggaggaagaag 26811357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 26949698 - 26949542
Alignment:
Q  1 ttgaggagcgaaggtgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggttcggattcccatgtcagaaagagctttgtagagattaccgg 100  Q
    |||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||| |||||||| |||||||||||||    
T  26949698 ttgaggagtgaaggtgtgatttcgtcacctttctgaagctccttatcatcaatgaaggttcggattcccttgtcagagagagctttatagagattaccgg 26949599  T
Q  101 tgaaaccgcgtcgagtgtcggtacccctgaaactaatgaacacgtcatagctgaaat 157  Q
    ||||||||  ||||||||||||||| ||||||||||||||||| ||| || ||||||    
T  26949598 tgaaaccgaatcgagtgtcggtacctctgaaactaatgaacacatcaaagttgaaat 26949542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 5 - 168
Target Start/End: Complemental strand, 25071692 - 25071529
Alignment:
Q  5 ggagcgaaggtgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggttcggattcccatgtcagaaagagctttgtagagattaccggtgaa 104  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||||| |||||  |||||||  |||||||||||||||| || ||||||||||| ||    
T  25071692 ggagcgaaggtgtgatttcgtcacctctcttaagctctttgtcatcaataaaggtgtggattcctttgtcagaaagagctttataaagattaccggtaaa 25071593  T
Q  105 accgcgtcgagtgtcggtacccctgaaactaatgaacacgtcatagctgaaattatgagagagg 168  Q
    ||||  |||||||||||||||||||||||||||||||||||||||| |||||| || |||||||    
T  25071592 accgaatcgagtgtcggtacccctgaaactaatgaacacgtcatagatgaaatcattagagagg 25071529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 26848697 - 26848538
Alignment:
Q  1 ttgaggagcgaaggtgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggttcggattcccatgtcagaaagagctttgtagagattaccgg 100  Q
    |||||||||||||||||||| || ||||| |||||||| |||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||| |    
T  26848697 ttgaggagcgaaggtgtgatctcatcaccactctgaagatccttgtcatcaatgaaggttcggattccattgtcagaaagagctttatagagattaccag 26848598  T
Q  101 tgaaaccgcgtcgagtgtcggtacccctgaaactaatgaacacgtcatagctgaaattat 160  Q
    |||||| |  || ||||||||| |||||||||||||||||||| |||||| |||||||||    
T  26848597 tgaaactgaatctagtgtcggtgcccctgaaactaatgaacacatcatagttgaaattat 26848538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 26975089 - 26974933
Alignment:
Q  1 ttgaggagcgaaggtgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggttcggattcccatgtcagaaagagctttgtagagattaccgg 100  Q
    |||||||||||||||||||||||||| ||| | | |||||||||||||||||||||| |   ||||||  |||||||||||||||| ||||| |||||||    
T  26975089 ttgaggagcgaaggtgtgatttcgtccccttttttaagctccttgtcatcaatgaagatgttgattcctttgtcagaaagagctttatagaggttaccgg 26974990  T
Q  101 tgaaaccgcgtcgagtgtcggtacccctgaaactaatgaacacgtcatagctgaaat 157  Q
    ||||||||  ||||||||||||||| |||||||||||||||||||||||| ||||||    
T  26974989 tgaaaccgaatcgagtgtcggtacctctgaaactaatgaacacgtcataggtgaaat 26974933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 26635727 - 26635562
Alignment:
Q  1 ttgaggagcgaaggtgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggttcggattcccatgtcagaaagagctttgtagagattaccgg 100  Q
    ||||||||||||||||||||||| || ||| | | ||||||||||||||||||||||||   ||||||  |||||||||||||||| ||||| |||||||    
T  26635727 ttgaggagcgaaggtgtgatttcatccccttttttaagctccttgtcatcaatgaaggtgttgattcctttgtcagaaagagctttatagaggttaccgg 26635628  T
Q  101 tgaaaccgcgtcgagtgtcggtacccctgaaactaatgaacacgtcatagctgaaattatgagaga 166  Q
    ||||||||  | |||||||||| ||||||||||||||||||||||| ||| |||||| || |||||    
T  26635627 tgaaaccgaattgagtgtcggtgcccctgaaactaatgaacacgtcgtaggtgaaatcattagaga 26635562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 26741693 - 26741528
Alignment:
Q  1 ttgaggagcgaaggtgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggttcggattcccatgtcagaaagagctttgtagagattaccgg 100  Q
    ||||||||||||||||||||||| || ||| | | ||||||||||||||||||||||||   ||||||  |||||||||||||||| ||||| |||||||    
T  26741693 ttgaggagcgaaggtgtgatttcatccccttttttaagctccttgtcatcaatgaaggtgttgattcctttgtcagaaagagctttatagaggttaccgg 26741594  T
Q  101 tgaaaccgcgtcgagtgtcggtacccctgaaactaatgaacacgtcatagctgaaattatgagaga 166  Q
    ||||||||  | |||||||||| ||||||||||||||||||||||| ||| |||||| || |||||    
T  26741593 tgaaaccgaattgagtgtcggtgcccctgaaactaatgaacacgtcgtaggtgaaatcattagaga 26741528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 5 - 179
Target Start/End: Original strand, 27665271 - 27665445
Alignment:
Q  5 ggagcgaaggtgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggttcggattcccatgtcagaaagagctttgtagagattaccggtgaa 104  Q
    |||| ||||||||||||||||||||  |  |||||||||||||||||||||||||  |||||||  ||||||||||||| || ||||| |||||||||||    
T  27665271 ggagtgaaggtgtgatttcgtcaccagttggaagctccttgtcatcaatgaaggtgtggattcctttgtcagaaagagccttatagaggttaccggtgaa 27665370  T
Q  105 accgcgtcgagtgtcggtacccctgaaactaatgaacacgtcatagctgaaattatgagagaggcgggaggagga 179  Q
    |||   ||||||||||||||||||||||||||||||||| ||  || |||||| || |||||||  |||||||||    
T  27665371 accaaatcgagtgtcggtacccctgaaactaatgaacacatcgaagttgaaatcataagagagggaggaggagga 27665445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 26959202 - 26959046
Alignment:
Q  1 ttgaggagcgaaggtgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggttcggattcccatgtcagaaagagctttgtagagattaccgg 100  Q
    ||||| ||||||||||||||||| || ||| | | |||||| |||||||||||||||||   ||||||  |||||||||||||||| ||||| |||||||    
T  26959202 ttgagaagcgaaggtgtgatttcatccccttttttaagctctttgtcatcaatgaaggtgtcgattcctttgtcagaaagagctttatagaggttaccgg 26959103  T
Q  101 tgaaaccgcgtcgagtgtcggtacccctgaaactaatgaacacgtcatagctgaaat 157  Q
    |||||| |  |||||||||||| ||||||||||||||||| ||||| ||| ||||||    
T  26959102 tgaaactgaatcgagtgtcggtgcccctgaaactaatgaagacgtcgtaggtgaaat 26959046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 6 - 104
Target Start/End: Complemental strand, 26617358 - 26617260
Alignment:
Q  6 gagcgaaggtgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggttcggattcccatgtcagaaagagctttgtagagattaccggtgaa 104  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||  ||||| |||||||||| |||||||| ||||||||    
T  26617358 gagcgaaggtgtgatttcatcacctctctgaagctccttgtcatcaatgaaggttcggactcctttgtcacaaagagctttatagagattgccggtgaa 26617260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 6 - 104
Target Start/End: Complemental strand, 26723286 - 26723188
Alignment:
Q  6 gagcgaaggtgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggttcggattcccatgtcagaaagagctttgtagagattaccggtgaa 104  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||  ||||| |||||||||| |||||||| ||||||||    
T  26723286 gagcgaaggtgtgatttcatcacctctctgaagctccttgtcatcaatgaaggttcggactcctttgtcacaaagagctttatagagattgccggtgaa 26723188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 13 - 143
Target Start/End: Complemental strand, 27229257 - 27229127
Alignment:
Q  13 ggtgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggttcggattcccatgtcagaaagagctttgtagagattaccggtgaaaccgcgtc 112  Q
    |||||||||||||| ||||| ||||| || |||||||||||||||||  |||||||| |||||| |||||| ||||||||||| ||||| |||||| | |    
T  27229257 ggtgtgatttcgtctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagattgccggtaaaaccgtgcc 27229158  T
Q  113 gagtgtcggtacccctgaaactaatgaacac 143  Q
    ||||||| || ||||| ||||||| ||||||    
T  27229157 gagtgtcagtgcccctaaaactaaggaacac 27229127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 27698644 - 27698786
Alignment:
Q  1 ttgaggagcgaaggtgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggttcggattcccatgtcagaaagagctttgtagagattaccgg 100  Q
    |||||||| || ||||||||||| || ||||| ||||| || |||||||||||||||||  |||||||| |||||| |||||| ||||||||||| ||||    
T  27698644 ttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagatttccgg 27698743  T
Q  101 tgaaaccgcgtcgagtgtcggtacccctgaaactaatgaacac 143  Q
    | |||||| | |||||||| || ||||| ||||| ||||||||    
T  27698744 taaaaccgtgccgagtgtcagtgcccctaaaactgatgaacac 27698786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 27724995 - 27725137
Alignment:
Q  1 ttgaggagcgaaggtgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggttcggattcccatgtcagaaagagctttgtagagattaccgg 100  Q
    |||||||| || ||||||||||| || ||||| ||||| || |||||||||||||||||  |||||||| |||||| |||||| ||||||||||| ||||    
T  27724995 ttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagatttccgg 27725094  T
Q  101 tgaaaccgcgtcgagtgtcggtacccctgaaactaatgaacac 143  Q
    | |||||| | |||||||| || ||||| ||||||| ||||||    
T  27725095 taaaaccgtgccgagtgtcagtgcccctaaaactaaggaacac 27725137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 28781176 - 28781034
Alignment:
Q  1 ttgaggagcgaaggtgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggttcggattcccatgtcagaaagagctttgtagagattaccgg 100  Q
    |||||||| || ||||||||||| || ||||| ||||| || ||||||||||||||||||  ||||||| |||||| |||||| ||||||||||| ||||    
T  28781176 ttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggttttgattcccttgtcagtaagagccttgtagagattgccgg 28781077  T
Q  101 tgaaaccgcgtcgagtgtcggtacccctgaaactaatgaacac 143  Q
    | |||||| | |||||||| || ||||| ||||| | ||||||    
T  28781076 taaaaccgtggcgagtgtcagtgcccctaaaactgaggaacac 28781034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 28786315 - 28786173
Alignment:
Q  1 ttgaggagcgaaggtgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggttcggattcccatgtcagaaagagctttgtagagattaccgg 100  Q
    |||||||| || ||||||||||| || ||||| ||||| || ||||||||||||||||||  ||||||| |||||| |||||| ||||||||||| ||||    
T  28786315 ttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggttttgattcccttgtcagtaagagccttgtagagatttccgg 28786216  T
Q  101 tgaaaccgcgtcgagtgtcggtacccctgaaactaatgaacac 143  Q
    | |||||| | |||||||| || ||||| ||||| | ||||||    
T  28786215 taaaaccgtggcgagtgtcagtgcccctaaaactgaggaacac 28786173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 28792436 - 28792294
Alignment:
Q  1 ttgaggagcgaaggtgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggttcggattcccatgtcagaaagagctttgtagagattaccgg 100  Q
    |||||||| || ||||||||||| || ||||| ||||| || ||||||||||||||||||  ||||||| |||||| |||||| ||||||||||| ||||    
T  28792436 ttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggttttgattcccttgtcagtaagagccttgtagagatttccgg 28792337  T
Q  101 tgaaaccgcgtcgagtgtcggtacccctgaaactaatgaacac 143  Q
    | |||||| | |||||||| || ||||| ||||| | ||||||    
T  28792336 taaaaccgtggcgagtgtcagtgcccctaaaactgaggaacac 28792294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 27611152 - 27611294
Alignment:
Q  1 ttgaggagcgaaggtgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggttcggattcccatgtcagaaagagctttgtagagattaccgg 100  Q
    |||||||| || ||||||||||| || |||||  |||| || |||||||||||||||||  |||||||| |||||| |||||| ||||||||||| ||||    
T  27611152 ttgaggagtgatggtgtgatttcatctcctcttggaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagatttccgg 27611251  T
Q  101 tgaaaccgcgtcgagtgtcggtacccctgaaactaatgaacac 143  Q
    | |||||| | |||||||| || ||||| ||||| | ||||||    
T  27611252 taaaaccgtggcgagtgtcagtgcccctaaaactgaggaacac 27611294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 27718529 - 27718671
Alignment:
Q  1 ttgaggagcgaaggtgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggttcggattcccatgtcagaaagagctttgtagagattaccgg 100  Q
    |||||||| || ||||||||||| || ||||| ||||| || |||||||||||||||||  |||||||| |||||| |||||| ||||||||||| ||||    
T  27718529 ttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagatttccgg 27718628  T
Q  101 tgaaaccgcgtcgagtgtcggtacccctgaaactaatgaacac 143  Q
    | |||| | | |||||||| || ||||| ||||| | ||||||    
T  27718629 taaaactgtgccgagtgtcagtgcccctaaaactgaggaacac 27718671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 13 - 119
Target Start/End: Original strand, 27531359 - 27531465
Alignment:
Q  13 ggtgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggttcggattcccatgtcagaaagagctttgtagagattaccggtgaaaccgcgtc 112  Q
    ||||||||||| || ||||| ||||| || |||||||||||||||||   ||||||| |||||| |||||| ||||||||||| ||||| |||||| | |    
T  27531359 ggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggtatagattcccttgtcagtaagagccttgtagagatttccggtaaaaccgtggc 27531458  T
Q  113 gagtgtc 119  Q
    |||||||    
T  27531459 gagtgtc 27531465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 13 - 143
Target Start/End: Original strand, 27604867 - 27604997
Alignment:
Q  13 ggtgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggttcggattcccatgtcagaaagagctttgtagagattaccggtgaaaccgcgtc 112  Q
    ||||||||||| || |||||  |||| || || ||||||||||||||  | |||||| |||||| |||||| ||||||||||| ||||| ||||||  ||    
T  27604867 ggtgtgatttcatctcctcttcgaagatcattttcatcaatgaaggtatgaattcccttgtcagtaagagccttgtagagattgccggtaaaaccgtatc 27604966  T
Q  113 gagtgtcggtacccctgaaactaatgaacac 143  Q
    ||||||| || ||||| ||||||| ||||||    
T  27604967 gagtgtcagtgcccctaaaactaaggaacac 27604997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 13 - 107
Target Start/End: Complemental strand, 29826052 - 29825958
Alignment:
Q  13 ggtgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggttcggattcccatgtcagaaagagctttgtagagattaccggtgaaacc 107  Q
    |||||||||||||| ||||| |||||||| ||||||||||||||||| || |||  | ||||||  ||||||||||||||||| ||||| |||||    
T  29826052 ggtgtgatttcgtcccctctttgaagctctttgtcatcaatgaaggtgcgaattttcttgtcagttagagctttgtagagattgccggtaaaacc 29825958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 13 - 136
Target Start/End: Complemental strand, 31284313 - 31284190
Alignment:
Q  13 ggtgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggttcggattcccatgtcagaaagagctttgtagagattaccggtgaaaccgcgtc 112  Q
    ||||||||||| || ||||| ||||| ||  | ||||||||||||||  |||||||| |||||| |||||| ||||||||||| |||||||||||    |    
T  31284313 ggtgtgatttcatcccctctttgaagttcactatcatcaatgaaggtgtggattcccttgtcagtaagagccttgtagagattgccggtgaaaccatacc 31284214  T
Q  113 gagtgtcggtacccctgaaactaa 136  Q
    |||||||  | |||||||||||||    
T  31284213 gagtgtcacttcccctgaaactaa 31284190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 143
Target Start/End: Complemental strand, 26802467 - 26802337
Alignment:
Q  13 ggtgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggttcggattcccatgtcagaaagagctttgtagagattaccggtgaaaccgcgtc 112  Q
    ||||||||||| || ||||| ||||| || |||||||||||||||||  |||||||| |||||  |||||| ||||||||||| || || ||||||   |    
T  26802467 ggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcaataagagccttgtagagattgcccgtaaaaccgtacc 26802368  T
Q  113 gagtgtcggtacccctgaaactaatgaacac 143  Q
    ||||||| || ||||| ||||| | ||||||    
T  26802367 gagtgtcagtgcccctaaaactgaggaacac 26802337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 13 - 108
Target Start/End: Original strand, 27593182 - 27593277
Alignment:
Q  13 ggtgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggttcggattcccatgtcagaaagagctttgtagagattaccggtgaaaccg 108  Q
    ||||||||||| |  ||||| |||||  | |||||||||||||||||   ||||||| |||||| |||||| ||||||||||| ||||||||||||    
T  27593182 ggtgtgatttcatttcctctttgaagaccattgtcatcaatgaaggtgttgattcccttgtcagtaagagccttgtagagattgccggtgaaaccg 27593277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 155
Target Start/End: Complemental strand, 28234589 - 28234447
Alignment:
Q  13 ggtgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggttcggattcccatgtcagaaagagctttgtagagattaccggtgaaaccgcgtc 112  Q
    ||||| ||||| || ||||  ||||||||| ||||||||||||||||  |||||||| ||| | |||||||| | ||||||||  |||| |||||    |    
T  28234589 ggtgttatttcatctcctccttgaagctccctgtcatcaatgaaggtgtggattcccttgtgacaaagagctctatagagattttcggtaaaaccatagc 28234490  T
Q  113 gagtgtcggtacccctgaaactaatgaacacgtcatagctgaa 155  Q
    |||||||  |||| || ||||||| ||||||||||||| ||||    
T  28234489 gagtgtcactacctctaaaactaaggaacacgtcataggtgaa 28234447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 108
Target Start/End: Complemental strand, 26622997 - 26622906
Alignment:
Q  17 tgatttcgtcacctctctgaagctccttgtcatcaatgaaggttcggattcccatgtcagaaagagctttgtagagattaccggtgaaaccg 108  Q
    |||||||||| ||||| ||||| ||    ||||||||||||||  |||||||| |||||| |||||| ||||||||||| || |||||||||    
T  26622997 tgatttcgtcccctctttgaagttcacgatcatcaatgaaggtgtggattcccttgtcagtaagagccttgtagagatttccagtgaaaccg 26622906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 108
Target Start/End: Complemental strand, 26728975 - 26728884
Alignment:
Q  17 tgatttcgtcacctctctgaagctccttgtcatcaatgaaggttcggattcccatgtcagaaagagctttgtagagattaccggtgaaaccg 108  Q
    |||||||||| ||||| ||||| ||    ||||||||||||||  |||||||| |||||| |||||| ||||||||||| || |||||||||    
T  26728975 tgatttcgtcccctctttgaagttcacgatcatcaatgaaggtgtggattcccttgtcagtaagagccttgtagagatttccagtgaaaccg 26728884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 108
Target Start/End: Original strand, 27338227 - 27338322
Alignment:
Q  13 ggtgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggttcggattcccatgtcagaaagagctttgtagagattaccggtgaaaccg 108  Q
    |||||| |||| || ||||| | ||| || ||||||||||||||||||  ||||||| |||||  |||||| ||||||||||| ||||| ||||||    
T  27338227 ggtgtgctttcatctcctctttcaagatcgttgtcatcaatgaaggttttgattcccttgtcaataagagccttgtagagattgccggtaaaaccg 27338322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 108
Target Start/End: Original strand, 27398967 - 27399062
Alignment:
Q  13 ggtgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggttcggattcccatgtcagaaagagctttgtagagattaccggtgaaaccg 108  Q
    |||||| |||| || ||||| | ||| || ||||||||||||||||||  ||||||| |||||  |||||| ||||||||||| ||||| ||||||    
T  27398967 ggtgtgctttcatctcctctttcaagatcgttgtcatcaatgaaggttttgattcccttgtcaataagagccttgtagagattgccggtaaaaccg 27399062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 108
Target Start/End: Complemental strand, 27678971 - 27678876
Alignment:
Q  13 ggtgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggttcggattcccatgtcagaaagagctttgtagagattaccggtgaaaccg 108  Q
    ||||||||||| || ||||| |||||  | || | ||||||||||||   ||||||| |||||| |||||| ||||||||||| ||||||||||||    
T  27678971 ggtgtgatttcatctcctctttgaagaccattcttatcaatgaaggtgttgattcccttgtcagtaagagccttgtagagattcccggtgaaaccg 27678876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 13 - 155
Target Start/End: Complemental strand, 26937119 - 26936977
Alignment:
Q  13 ggtgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggttcggattcccatgtcagaaagagctttgtagagattaccggtgaaaccgcgtc 112  Q
    ||||||||||| || ||||  || ||||||||||||||||||||||| || |||||    ||| ||||||||||||| |||| |||  | |||  |   |    
T  26937119 ggtgtgatttcttctcctccatggagctccttgtcatcaatgaaggtgcgaattccacaatcacaaagagctttgtaaagatgaccaataaaatggaagc 26937020  T
Q  113 gagtgtcggtacccctgaaactaatgaacacgtcatagctgaa 155  Q
    |||||||||| || |||||||| | ||||||||||||| ||||    
T  26937019 gagtgtcggtgcctctgaaactgaggaacacgtcataggtgaa 26936977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 13 - 155
Target Start/End: Complemental strand, 28325506 - 28325364
Alignment:
Q  13 ggtgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggttcggattcccatgtcagaaagagctttgtagagattaccggtgaaaccgcgtc 112  Q
    ||||| |||||||||||||  ||||| || ||||||||||||||||| || |||| | |   | ||||| ||||||||||||| || || |||||    |    
T  28325506 ggtgttatttcgtcacctcgttgaaggtctttgtcatcaatgaaggtacgaattctcttcctacaaagatctttgtagagatttccagtaaaaccataac 28325407  T
Q  113 gagtgtcggtacccctgaaactaatgaacacgtcatagctgaa 155  Q
    |||||||  |||| || ||||||| ||||||||||||| ||||    
T  28325406 gagtgtcactacctctaaaactaaggaacacgtcataggtgaa 28325364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 28181133 - 28181068
Alignment:
Q  19 atttcgtcacctctctgaagctccttgtcatcaatgaaggttcggattcccatgtcagaaagagct 84  Q
    ||||| |||||||  ||||||||  ||||||| |||||||||||||||||| ||||| ||||||||    
T  28181133 atttcttcacctccttgaagctctctgtcatccatgaaggttcggattcccttgtcacaaagagct 28181068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 28185385 - 28185320
Alignment:
Q  19 atttcgtcacctctctgaagctccttgtcatcaatgaaggttcggattcccatgtcagaaagagct 84  Q
    ||||| |||||||  ||||||||  ||||||| |||||||||||||||||| ||||| ||||||||    
T  28185385 atttcttcacctccttgaagctctctgtcatccatgaaggttcggattcccttgtcacaaagagct 28185320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 101
Target Start/End: Complemental strand, 25481767 - 25481679
Alignment:
Q  13 ggtgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggttcggattcccatgtcagaaagagctttgtagagattaccggt 101  Q
    ||||||||||| || ||||| ||||| || || ||||||||||| || || |||||| |||||  |||||| || ||||||||||||||    
T  25481767 ggtgtgatttcatctcctctttgaagatcattttcatcaatgaaagtacgaattcccttgtcaacaagagccttatagagattaccggt 25481679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 101
Target Start/End: Complemental strand, 25579744 - 25579656
Alignment:
Q  13 ggtgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggttcggattcccatgtcagaaagagctttgtagagattaccggt 101  Q
    ||||||||||| || ||||| ||||| || || ||||||| |||||| || |||||| |||||  |||||| || ||||||||||||||    
T  25579744 ggtgtgatttcatctcctctttgaagatcattatcatcaaagaaggtacgaattcccttgtcaacaagagccttatagagattaccggt 25579656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 13 - 108
Target Start/End: Complemental strand, 26656014 - 26655919
Alignment:
Q  13 ggtgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggttcggattcccatgtcagaaagagctttgtagagattaccggtgaaaccg 108  Q
    ||||||||||| || |||||  |||| || |||||||||||||| ||  |||||||| | |||  |||||| ||||||||||| ||||| ||||||    
T  26656014 ggtgtgatttcatctcctctgagaagatcattgtcatcaatgaaagtatggattcccttatcaataagagccttgtagagattgccggtaaaaccg 26655919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 13 - 108
Target Start/End: Complemental strand, 26761985 - 26761890
Alignment:
Q  13 ggtgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggttcggattcccatgtcagaaagagctttgtagagattaccggtgaaaccg 108  Q
    ||||||||||| || |||||  |||| || |||||||||||||| ||  |||||||| | |||  |||||| ||||||||||| ||||| ||||||    
T  26761985 ggtgtgatttcatctcctctgagaagatcattgtcatcaatgaaagtatggattcccttatcaataagagccttgtagagattgccggtaaaaccg 26761890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 49 - 108
Target Start/End: Original strand, 27677812 - 27677871
Alignment:
Q  49 tcaatgaaggttcggattcccatgtcagaaagagctttgtagagattaccggtgaaaccg 108  Q
    |||||||||||  |||||||| |||||  |||||| ||||||||||| ||||||||||||    
T  27677812 tcaatgaaggtgtggattcccttgtcatcaagagccttgtagagattgccggtgaaaccg 27677871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 155
Target Start/End: Original strand, 28098567 - 28098673
Alignment:
Q  49 tcaatgaaggttcggattcccatgtcagaaagagctttgtagagattaccggtgaaaccgcgtcgagtgtcggtacccctgaaactaatgaacacgtcat 148  Q
    ||||||||||| |||| |||   |||| ||||||||||||||||||| || || |||||    ||||||||||| ||||| ||| |||  ||||||||||    
T  28098567 tcaatgaaggtgcggactcctccgtcacaaagagctttgtagagatttccagtaaaaccataccgagtgtcggtgcccctaaaattaagaaacacgtcat 28098666  T
Q  149 agctgaa 155  Q
    || ||||    
T  28098667 aggtgaa 28098673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 46 - 107
Target Start/End: Complemental strand, 26861608 - 26861547
Alignment:
Q  46 tcatcaatgaaggttcggattcccatgtcagaaagagctttgtagagattaccggtgaaacc 107  Q
    ||||| ||||||||  | |||||| |||||| |||||| ||||||||||||||||| |||||    
T  26861608 tcatccatgaaggtgtgaattcccttgtcagtaagagccttgtagagattaccggtaaaacc 26861547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 46 - 107
Target Start/End: Complemental strand, 26884155 - 26884094
Alignment:
Q  46 tcatcaatgaaggttcggattcccatgtcagaaagagctttgtagagattaccggtgaaacc 107  Q
    ||||||||||||||  |||||||| ||| || |||||| ||||||||||| || ||||||||    
T  26884155 tcatcaatgaaggtgtggattcccttgttagtaagagccttgtagagatttccagtgaaacc 26884094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 28139560 - 28139471
Alignment:
Q  19 atttcgtcacctctctgaagctccttgtcatcaatgaaggttcggattcccatgtcagaaagagctttgtagagattaccggtgaaaccg 108  Q
    |||||||||||||  ||||||||| | |||||||| || ||  |||||||   ||||  |||||||||||||||||| || |||||||||    
T  28139560 atttcgtcacctccttgaagctccctatcatcaataaaagtgtggattccacagtcacgaagagctttgtagagatttccagtgaaaccg 28139471  T

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Target: chr6; HSP #47
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 101
Target Start/End: Complemental strand, 26142890 - 26142802
Alignment:
Q  13 ggtgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggttcggattcccatgtcagaaagagctttgtagagattaccggt 101  Q
    ||||||||||| || ||||| | ||| || || ||||||||||| || || |||||| |||||  |||||| || ||||||||||||||    
T  26142890 ggtgtgatttcatctcctctttcaagatcattatcatcaatgaaagtacgaattcccttgtcaacaagagccttatagagattaccggt 26142802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 17993834 - 17993989
Alignment:
Q  1 ttgaggagcgaaggtgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggttcggattcccatgtcagaaagagctttgtagagattaccgg 100  Q
    ||||||||||| ||||||||||| ||||||||||||||||| |||||||| ||||||||||| |||||| |||||||||||||||| |||||||||||||    
T  17993834 ttgaggagcgacggtgtgatttcatcacctctctgaagctctttgtcatcgatgaaggttcgaattcccttgtcagaaagagctttatagagattaccgg 17993933  T
Q  101 tgaaaccgcgtcgagtgtcggtacccctgaaactaatgaacacgtcatagctgaaa 156  Q
    |||||||   |||||| |||||||||||||||||||||||||| ||  ||||||||    
T  17993934 tgaaaccatatcgagtatcggtacccctgaaactaatgaacacatcgaagctgaaa 17993989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1254 (Bit Score: 63; Significance: 1e-27; HSPs: 1)
Name: scaffold1254
Description:

Target: scaffold1254; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 67 - 209
Alignment:
Q  1 ttgaggagcgaaggtgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggttcggattcccatgtcagaaagagctttgtagagattaccgg 100  Q
    |||||||| || ||||||||||| || ||||| ||||| || ||||||||||||||||||  ||||||| |||||| |||||| ||||||||||| ||||    
T  67 ttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggttttgattcccttgtcagtaagagccttgtagagattgccgg 166  T
Q  101 tgaaaccgcgtcgagtgtcggtacccctgaaactaatgaacac 143  Q
    | |||||| | |||||||| || ||||| ||||||| ||||||    
T  167 taaaaccgtggcgagtgtcagtgcccctaaaactaaggaacac 209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 63; Significance: 1e-27; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 7562 - 7420
Alignment:
Q  1 ttgaggagcgaaggtgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggttcggattcccatgtcagaaagagctttgtagagattaccgg 100  Q
    |||||||| || ||||||||||| || ||||| ||||| || ||||||||||||||||||  ||||||| |||||| |||||| ||||||||||| ||||    
T  7562 ttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggttttgattcccttgtcagtaagagccttgtagagattgccgg 7463  T
Q  101 tgaaaccgcgtcgagtgtcggtacccctgaaactaatgaacac 143  Q
    | |||||| | |||||||| || ||||| ||||||| ||||||    
T  7462 taaaaccgtggcgagtgtcagtgcccctaaaactaaggaacac 7420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 63; Significance: 1e-27; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 3572 - 3714
Alignment:
Q  1 ttgaggagcgaaggtgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggttcggattcccatgtcagaaagagctttgtagagattaccgg 100  Q
    |||||||| || ||||||||||| || ||||| ||||| || |||||||||||||||||  |||||||| |||||| |||||| ||||||||||| ||||    
T  3572 ttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagatttccgg 3671  T
Q  101 tgaaaccgcgtcgagtgtcggtacccctgaaactaatgaacac 143  Q
    | |||||| | |||||||| || ||||| ||||||| ||||||    
T  3672 taaaaccgtgccgagtgtcagtgcccctaaaactaaggaacac 3714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 14505 - 14647
Alignment:
Q  1 ttgaggagcgaaggtgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggttcggattcccatgtcagaaagagctttgtagagattaccgg 100  Q
    |||||||| || ||||||||||| || ||||| ||||| || |||||||||||||||||  |||||||| |||||| |||||| ||||||||||| ||||    
T  14505 ttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagatttccgg 14604  T
Q  101 tgaaaccgcgtcgagtgtcggtacccctgaaactaatgaacac 143  Q
    | |||||| | |||||||| || ||||| ||||| ||||||||    
T  14605 taaaaccgtgccgagtgtcagtgcccctaaaactgatgaacac 14647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 59; Significance: 3e-25; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 13782 - 13924
Alignment:
Q  1 ttgaggagcgaaggtgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggttcggattcccatgtcagaaagagctttgtagagattaccgg 100  Q
    |||||||| || ||||||||||| || ||||| ||||| || ||||||||||||||||||  ||||||| |||||| |||||| ||||||||||| ||||    
T  13782 ttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggttttgattcccttgtcagtaagagccttgtagagattgccgg 13881  T
Q  101 tgaaaccgcgtcgagtgtcggtacccctgaaactaatgaacac 143  Q
    | |||||| | |||||||| || ||||| ||||| | ||||||    
T  13882 taaaaccgtggcgagtgtcagtgcccctaaaactgaggaacac 13924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 13 - 119
Target Start/End: Original strand, 4833 - 4939
Alignment:
Q  13 ggtgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggttcggattcccatgtcagaaagagctttgtagagattaccggtgaaaccgcgtc 112  Q
    ||||||||||| || ||||| ||||| || ||||||||||||||||||  ||||||| |||||| |||||| ||||||||||| ||||| |||||| | |    
T  4833 ggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggttttgattcccttgtcagtaagagccttgtagagatttccggtaaaaccgtggc 4932  T
Q  113 gagtgtc 119  Q
    |||||||    
T  4933 gagtgtc 4939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 13 - 98
Target Start/End: Complemental strand, 16689036 - 16688951
Alignment:
Q  13 ggtgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggttcggattcccatgtcagaaagagctttgtagagattacc 98  Q
    |||||||||| ||||||||||||||| ||||||||||||||||||   ||||||||| ||||| | ||||||||||| ||||||||    
T  16689036 ggtgtgattttgtcacctctctgaagttccttgtcatcaatgaagacacggattcccttgtcacatagagctttgtacagattacc 16688951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 13 - 95
Target Start/End: Original strand, 58444 - 58526
Alignment:
Q  13 ggtgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggttcggattcccatgtcagaaagagctttgtagagatt 95  Q
    ||||| |||||||||||||  ||||||||  ||||||| |||||||||||||||||| ||||| |||||||| ||||||||||    
T  58444 ggtgttatttcgtcacctccttgaagctctctgtcatccatgaaggttcggattcccttgtcacaaagagctctgtagagatt 58526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 155
Target Start/End: Complemental strand, 34750 - 34608
Alignment:
Q  13 ggtgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggttcggattcccatgtcagaaagagctttgtagagattaccggtgaaaccgcgtc 112  Q
    ||||| ||||| || ||||  ||||||||| ||||||||||||||||  |||||||| ||| | |||||||| | ||||||||  |||| |||||    |    
T  34750 ggtgttatttcatctcctccttgaagctccctgtcatcaatgaaggtgtggattcccttgtgacaaagagctctatagagattttcggtaaaaccatagc 34651  T
Q  113 gagtgtcggtacccctgaaactaatgaacacgtcatagctgaa 155  Q
    |||||||  |||| || ||||||| ||||||||||||| ||||    
T  34650 gagtgtcactacctctaaaactaaggaacacgtcataggtgaa 34608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 13 - 155
Target Start/End: Complemental strand, 116821 - 116679
Alignment:
Q  13 ggtgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggttcggattcccatgtcagaaagagctttgtagagattaccggtgaaaccgcgtc 112  Q
    ||||| |||||||||||||  ||||| || ||||||||||||||||| || |||| | |   | ||||| ||||||||||||| || || |||||    |    
T  116821 ggtgttatttcgtcacctcgttgaaggtctttgtcatcaatgaaggtacgaattctcttcctacaaagatctttgtagagatttccagtaaaaccataac 116722  T
Q  113 gagtgtcggtacccctgaaactaatgaacacgtcatagctgaa 155  Q
    |||||||  |||| || ||||||| ||||||||||||| ||||    
T  116721 gagtgtcactacctctaaaactaaggaacacgtcataggtgaa 116679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.00000000007; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 45 - 131
Target Start/End: Original strand, 18699581 - 18699667
Alignment:
Q  45 gtcatcaatgaaggttcggattcccatgtcagaaagagctttgtagagattaccggtgaaaccgcgtcgagtgtcggtacccctgaa 131  Q
    |||||||||||||||  |||||||| |||||| |||||||||||||||||  || || ||||||   |||||||| || ||||||||    
T  18699581 gtcatcaatgaaggtgtggattcccttgtcagtaagagctttgtagagatggccagtaaaaccgtcacgagtgtcagtgcccctgaa 18699667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 94
Target Start/End: Original strand, 18655658 - 18655707
Alignment:
Q  45 gtcatcaatgaaggttcggattcccatgtcagaaagagctttgtagagat 94  Q
    |||||||||||||||  |||||||| |||||| |||||||||||||||||    
T  18655658 gtcatcaatgaaggtgtggattcccttgtcagtaagagctttgtagagat 18655707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 45 - 108
Target Start/End: Original strand, 18724266 - 18724329
Alignment:
Q  45 gtcatcaatgaaggttcggattcccatgtcagaaagagctttgtagagattaccggtgaaaccg 108  Q
    |||||||||||||||  |||||||| |||||| |||||| |||||||||| ||| || ||||||    
T  18724266 gtcatcaatgaaggtgtggattcccttgtcagtaagagccttgtagagatgaccagtaaaaccg 18724329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 45 - 94
Target Start/End: Original strand, 18731685 - 18731734
Alignment:
Q  45 gtcatcaatgaaggttcggattcccatgtcagaaagagctttgtagagat 94  Q
    |||||||||||||||  |||||||| |||||| ||||||| |||||||||    
T  18731685 gtcatcaatgaaggtgtggattcccttgtcagtaagagctctgtagagat 18731734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 94
Target Start/End: Original strand, 268539 - 268587
Alignment:
Q  46 tcatcaatgaaggttcggattcccatgtcagaaagagctttgtagagat 94  Q
    ||||||||||||||  |||||||| |||||| |||||| ||||||||||    
T  268539 tcatcaatgaaggtgtggattcccttgtcagtaagagccttgtagagat 268587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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