View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21151_low_3 (Length: 516)
Name: NF21151_low_3
Description: NF21151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21151_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 471; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 16 - 510
Target Start/End: Complemental strand, 2627090 - 2626596
Alignment:
| Q |
16 |
cagttgtttcagaataaaattttgattattccagacgctgcagctaccagtggtaaggctgaactctttatgcattctcctgccttaagcccgttccaca |
115 |
Q |
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| T |
2627090 |
cagttgtttcagaataaaattttgattattccagacgctgcagctaccagtggtaaggctgaactctttatgcattctcctgccttaagcccgttccaca |
2626991 |
T |
|
| Q |
116 |
tttggggaaagaatctaaagttggaaaggaagaaccatccgagacttaaaaatatattagagcatggaatggttgatatgtgctttgaaaattgttcaag |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
2626990 |
tttggggaaagaatctaaagttggaaaggaagaaccatccgagacttaaaaatatattagagcatggaatggttgatatgtgctttgaaaattgttctag |
2626891 |
T |
|
| Q |
216 |
aatgagtgaagctcatttttctatcgcttccaatttcaagactcatttctctaggttgcctgacatagaaaccactatatgccttaacagaaaaagaaag |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2626890 |
aatgagtgaagctcatttttctatcgcttccaatttcaagactcatttctctagtttgcctgacatagaaaccactatatgccttaacagaaaaagaaag |
2626791 |
T |
|
| Q |
316 |
cgaccagataaacatgctttatgtcctcaaattggcagagctcaagaaaatgaaggttttgcatacatctcaaaaaataccagacctaggatctcacaca |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
2626790 |
cgaccagataaacatgctttatgtcctcaaattggcagagctcaagaaaatgaaggttttgcatacatctcaaaaaataccagacctaggatctcaaaca |
2626691 |
T |
|
| Q |
416 |
tcagtactcttgaaccagaagaaagtattcgaaaagacattctgtcctgcacacactttcctgaaattagcataatcttcactgatgatgtccat |
510 |
Q |
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| T |
2626690 |
tcagtactcttgaaccagaagaaagtattcgaaaagacattctgtcctgcacacactttcatgaaactagcataatcttcactgatgaggtccat |
2626596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 18 - 263
Target Start/End: Complemental strand, 2638818 - 2638573
Alignment:
| Q |
18 |
gttgtttcagaataaaattttgattattccagacgctgcagctaccagtggtaaggctgaactctttatgcattctcctgccttaagcccgttccacatt |
117 |
Q |
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|||||||||||||||| ||| |||||||||||| ||| || |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
2638818 |
gttgtttcagaataaactttggattattccagaggctccaactacgggtggtaaggctgaactctttatgcattctcctgccttaagcccattccacatt |
2638719 |
T |
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| Q |
118 |
tggggaaagaatctaaagttggaaaggaagaaccatccgagacttaaaaatatattagagcatggaatggttgatatgtgctttgaaaattgttcaagaa |
217 |
Q |
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|||||||||||||||||||| |||||| ||||| ||||| | ||||||||||||||||||| ||||| |||||||| ||||||||||||||||| |||| |
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| T |
2638718 |
tggggaaagaatctaaagttagaaaggcagaacagtccgatatttaaaaatatattagagcacggaatagttgatatctgctttgaaaattgttctagaa |
2638619 |
T |
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| Q |
218 |
tgagtgaagctcatttttctatcgcttccaatttcaagactcattt |
263 |
Q |
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| T |
2638618 |
tgagtgaagctcatttttctatcgcttccaatttcaagactcattt |
2638573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 265 - 367
Target Start/End: Complemental strand, 2638526 - 2638424
Alignment:
| Q |
265 |
tctaggttgcctgacatagaaaccactatatgccttaacagaaaaagaaagcgaccagataaacatgctttatgtcctcaaattggcagagctcaagaaa |
364 |
Q |
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||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||| | ||||||| |
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| T |
2638526 |
tctaggttgcctgacatagaaacgactatgtgcctcgacagaaaaagaaagcgaccagataaacatgctttatgttctcaaattcgcagggagcaagaaa |
2638427 |
T |
|
| Q |
365 |
atg |
367 |
Q |
| |
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||| |
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|
| T |
2638426 |
atg |
2638424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 87 - 193
Target Start/End: Original strand, 44003835 - 44003941
Alignment:
| Q |
87 |
gcattctcctgccttaagcccgttccacatttggggaaagaatctaaagttggaaaggaagaaccatccgagacttaaaaatatattagagcatggaatg |
186 |
Q |
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||||||||||| ||||||||| |||||||| |||||||||| |||||||||||||||| | | || || ||| || ||||| ||||||| ||||| ||| |
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| T |
44003835 |
gcattctcctggcttaagcccattccacatatggggaaagagtctaaagttggaaaggcatagccttcttagattttaaaatttattagatcatggcatg |
44003934 |
T |
|
| Q |
187 |
gttgata |
193 |
Q |
| |
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||||||| |
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| T |
44003935 |
gttgata |
44003941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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