View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21151_low_6 (Length: 439)
Name: NF21151_low_6
Description: NF21151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21151_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 401; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 17 - 429
Target Start/End: Original strand, 49271678 - 49272090
Alignment:
| Q |
17 |
aagaacaccaggaacagagggacagaacttaaagctatatatctcataagcatgttcacctgcaagcctctcaattttgaacttgctaacaagatcccca |
116 |
Q |
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| T |
49271678 |
aagaacaccaggaacagagggacagaacttaaagctatatatctcataagcatgttcacctgcaagcctctcaatcttgaacttgctaacaagatcccca |
49271777 |
T |
|
| Q |
117 |
gctgtaccaccagtgctcacaaaccaaaacccagacccaacctttaaaagcctccacacttttggttcattgcaaggactacccagaataggaatctcaa |
216 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49271778 |
gctgcaccaccagtgctcacaaaccaaaacccagacccaacctttaaaagcctccacacttttggttcattgcaaggactacccagaataggaatctcaa |
49271877 |
T |
|
| Q |
217 |
tggtgaggtcagtgagagttggaatgtaatcaagacctgatgcagagaaatacaccggtgtgccgattgcatcagggttacggattacatcaagagggca |
316 |
Q |
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| T |
49271878 |
tggtgaggtcagtgagagttggaatgtaatcaagacctgatgcagagaaatacaccggtgtgccgattgcatcagggttacggattacatcaagagggca |
49271977 |
T |
|
| Q |
317 |
tgttttgtttcttgtatgtcctaatgtaatgcctccattgtcggcccaaagtggaaatacgtagtaaccttcacctggtttaagagggttaccttgtttg |
416 |
Q |
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| T |
49271978 |
tgttttgtttcttgtgtgtcctaatgtaatgcctccattgtcggcccaaagtggaaatacgtagtaaccttcacctggtttaagagggttaccttgtttg |
49272077 |
T |
|
| Q |
417 |
tctactactgcct |
429 |
Q |
| |
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| T |
49272078 |
tctactactgcct |
49272090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 23 - 429
Target Start/End: Original strand, 49277601 - 49278013
Alignment:
| Q |
23 |
accaggaacagagggacagaacttaaagctatatatctcataagcatgttcacctgcaagcctctcaattttgaacttgctaacaagatccccagctgta |
122 |
Q |
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| T |
49277601 |
accaggaacagaaggacagtacagaaagctataaatctcataagcatgttctccctcaagcctctcaatcttaaactggctaaaaaggttcccaggaaaa |
49277700 |
T |
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| Q |
123 |
ccaccagtgctcacaaaccaaaacccagacccaa------cctttaaaagcctccacacttttggttcattgcaaggactacccagaataggaatctcaa |
216 |
Q |
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| T |
49277701 |
ccaccggtgctcacaaaccaaaacctagctctagttccctcttttgaaatcttccacacttttctctcactgcaaggactacccaatattggaatctcaa |
49277800 |
T |
|
| Q |
217 |
tggtgaggtcagtgagagttggaatgtaatcaagacctgatgcagagaaatacaccggtgtgccgattgcatcagggttacggattacatcaagagggca |
316 |
Q |
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| T |
49277801 |
cggtgagatcagtgagagttggaatgtaatcatgttcatattcatagaaataaactggcgagccaatggcttcagggttacggataacatcaagagggca |
49277900 |
T |
|
| Q |
317 |
tgttttgtttcttgtatgtcctaatgtaatgcctccattgtcggcccaaagtggaaatacgtagtaaccttcacctggtttaagagggttaccttgtttg |
416 |
Q |
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||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49277901 |
tgttttgtttcttgtttgtcctaatgttatgcctccattgtcagcccaaagtggaaatacgtagtaaccttcacctggtttaagagggttaccttgtttg |
49278000 |
T |
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| Q |
417 |
tctactactgcct |
429 |
Q |
| |
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||||||||||||| |
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| T |
49278001 |
tctactactgcct |
49278013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 79 - 331
Target Start/End: Original strand, 49269292 - 49269544
Alignment:
| Q |
79 |
caagcctctcaattttgaacttgctaacaagatccccagctgtaccaccagtgctcacaaaccaaaacccagacccaacctttaaaagcctccacacttt |
178 |
Q |
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||||| ||||||| |||||||| ||||||| |||||||||| |||||||||||||| |||||| |||||||| || | ||| ||||| || ||||||| |
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| T |
49269292 |
caagcttctcaatcttgaacttactaacaacatccccagctacaccaccagtgctcaaaaaccagaacccagatccctcttttgaaagcttcaacacttt |
49269391 |
T |
|
| Q |
179 |
tggttcattgcaaggactacccagaataggaatctcaatggtgaggtcagtgagagttggaatgtaatcaagacctgatgcagagaaatacaccggtgtg |
278 |
Q |
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|| | ||||| | ||||| | || |||| | ||||| || ||||| |||||||||||| | || ||||| ||||||||| ||||| || | | |
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| T |
49269392 |
tgactggttgcatgaactactcctaaatcgaattttaatggaaagatcagtttgagttggaatgtgtttaaaacctggtgcagagaagtacactggcgag |
49269491 |
T |
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| Q |
279 |
ccgattgcatcagggttacggattacatcaagagggcatgttttgtttcttgt |
331 |
Q |
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| T |
49269492 |
ccgagttctttagggttacgaattacatcaagaggacatgttttgtttcttgt |
49269544 |
T |
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