View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21151_low_7 (Length: 438)
Name: NF21151_low_7
Description: NF21151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21151_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 11 - 330
Target Start/End: Original strand, 47088110 - 47088428
Alignment:
| Q |
11 |
cagagattaacctcacacttaaaggaagcattagttatgtgctaaaatcacattcactacacaactgctgagctatgttgtgtgtgtaggtgggtagaca |
110 |
Q |
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| T |
47088110 |
cagagattaacctcacacttaaaggaagcattagttatgtgctaaaatcacattcactacacaactgctgagctatgttgtgtgtgtaggtgggtagaca |
47088209 |
T |
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| Q |
111 |
cgtctgtgttagagagagagaatcctaaccagacaaactccaaagctccaatgacagaaaagtatcagaggctcggattcnnnnnnnnnnnntgtagcac |
210 |
Q |
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| T |
47088210 |
cgtctgtgttagagagagagaatcctaaccagacaaactccaaagctccaatgacagaaaagtaacagaggctcggattc-aaaaaaaaaaatgtagcac |
47088308 |
T |
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| Q |
211 |
atttgttttcaaaacaataaaacaaacatgttatacgttattttctagtattccacattacgggcagctaactgtctaagacaaagaatgagtgtaaatt |
310 |
Q |
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| T |
47088309 |
atttgttttcaaaacaataaaacaaacatgttataagttattttctagcattccacattacgggcagctaactgtctaagacaaagaatgagtgtaaatt |
47088408 |
T |
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| Q |
311 |
attgcattagctggccagat |
330 |
Q |
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| T |
47088409 |
attgcattagctggccagat |
47088428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 325 - 421
Target Start/End: Original strand, 47088458 - 47088554
Alignment:
| Q |
325 |
ccagatgttttgtttaacatcacaagcagaagctacttaagttcacgctataaaattacattaccaagatacaatagtatgtaatgacatgaaatat |
421 |
Q |
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| T |
47088458 |
ccagatgttttgtttaacatcacaagcagaagctacttaagttcacactataaaattacattaccaagatacaatagtatgtaatgacatgaaatat |
47088554 |
T |
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