View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21151_low_9 (Length: 375)

Name: NF21151_low_9
Description: NF21151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21151_low_9
NF21151_low_9
[»] chr6 (16 HSPs)
chr6 (47-265)||(14326168-14326388)
chr6 (47-265)||(14419178-14419398)
chr6 (144-231)||(16269513-16269600)
chr6 (28-147)||(14328773-14328900)
chr6 (28-147)||(14421783-14421910)
chr6 (47-112)||(13800046-13800112)
chr6 (50-112)||(31740307-31740370)
chr6 (47-148)||(9927621-9927723)
chr6 (177-234)||(22299804-22299861)
chr6 (156-207)||(8412236-8412287)
chr6 (47-112)||(8412351-8412417)
chr6 (47-112)||(12202327-12202393)
chr6 (49-90)||(16251633-16251675)
chr6 (47-112)||(22299938-22300004)
chr6 (47-107)||(1757534-1757595)
chr6 (47-114)||(12203304-12203372)
[»] chr3 (37 HSPs)
chr3 (47-265)||(23561007-23561226)
chr3 (47-238)||(12060673-12060866)
chr3 (47-147)||(23559834-23559936)
chr3 (47-110)||(12062421-12062485)
chr3 (144-231)||(48866275-48866362)
chr3 (48-148)||(35174380-35174482)
chr3 (47-147)||(48867429-48867531)
chr3 (149-231)||(49334233-49334315)
chr3 (47-147)||(54653965-54654067)
chr3 (156-235)||(51825512-51825592)
chr3 (47-112)||(21127940-21128006)
chr3 (48-137)||(43346456-43346547)
chr3 (47-112)||(30431390-30431456)
chr3 (47-116)||(43101909-43101979)
chr3 (47-112)||(43345334-43345400)
chr3 (150-231)||(52293418-52293499)
chr3 (47-148)||(25583129-25583232)
chr3 (47-112)||(8371235-8371301)
chr3 (47-112)||(8372651-8372717)
chr3 (47-112)||(10987688-10987754)
chr3 (150-184)||(29537077-29537111)
chr3 (47-112)||(41387468-41387534)
chr3 (47-139)||(42633893-42633987)
chr3 (144-238)||(47854620-47854714)
chr3 (150-184)||(47855279-47855313)
chr3 (150-184)||(48825952-48825986)
chr3 (47-112)||(51214201-51214267)
chr3 (47-112)||(51401386-51401452)
chr3 (47-147)||(51825620-51825722)
chr3 (47-107)||(2088857-2088918)
chr3 (151-184)||(7820533-7820566)
chr3 (71-116)||(26798937-26798982)
chr3 (47-107)||(50150736-50150797)
chr3 (47-106)||(1031831-1031891)
chr3 (92-147)||(29536775-29536831)
chr3 (167-231)||(39287606-39287670)
chr3 (49-112)||(48866158-48866222)
[»] chr8 (26 HSPs)
chr8 (47-238)||(8096453-8096646)
chr8 (47-147)||(8095361-8095463)
chr8 (48-147)||(13367049-13367150)
chr8 (143-230)||(36071273-36071360)
chr8 (47-139)||(2421300-2421394)
chr8 (47-112)||(22619910-22619976)
chr8 (47-112)||(22621169-22621235)
chr8 (47-112)||(34616144-34616210)
chr8 (47-112)||(3237433-3237498)
chr8 (49-148)||(20308622-20308723)
chr8 (49-148)||(21095255-21095356)
chr8 (48-112)||(31625419-31625484)
chr8 (162-207)||(38589971-38590016)
chr8 (47-145)||(24069447-24069547)
chr8 (47-112)||(35943922-35943989)
chr8 (47-112)||(24068345-24068411)
chr8 (47-147)||(31623921-31624023)
chr8 (47-112)||(38591042-38591108)
chr8 (47-108)||(43277960-43278022)
chr8 (47-112)||(43386737-43386803)
chr8 (47-107)||(4534049-4534110)
chr8 (47-107)||(16346114-16346175)
chr8 (47-111)||(35945473-35945538)
chr8 (47-107)||(45195844-45195905)
chr8 (48-107)||(9190482-9190542)
chr8 (47-106)||(41521332-41521392)
[»] chr2 (21 HSPs)
chr2 (50-238)||(14510417-14510607)
chr2 (48-112)||(7490230-7490295)
chr2 (150-231)||(41312640-41312721)
chr2 (47-148)||(14509224-14509327)
chr2 (47-112)||(3532209-3532275)
chr2 (47-108)||(15850127-15850189)
chr2 (150-231)||(33836909-33836990)
chr2 (50-112)||(3533661-3533724)
chr2 (150-231)||(2305680-2305761)
chr2 (71-147)||(12852926-12853003)
chr2 (146-231)||(42246726-42246811)
chr2 (50-112)||(25569787-25569850)
chr2 (150-184)||(3665364-3665398)
chr2 (47-108)||(5564074-5564136)
chr2 (47-108)||(5565184-5565246)
chr2 (47-112)||(7038367-7038433)
chr2 (47-112)||(12854139-12854205)
chr2 (47-112)||(43015554-43015620)
chr2 (71-112)||(5435199-5435240)
chr2 (153-218)||(6208974-6209039)
chr2 (47-107)||(33553405-33553466)
[»] chr1 (45 HSPs)
chr1 (144-231)||(2971833-2971920)
chr1 (142-238)||(40812500-40812595)
chr1 (145-230)||(21278114-21278199)
chr1 (47-147)||(19466204-19466306)
chr1 (47-147)||(36511330-36511432)
chr1 (150-231)||(35684098-35684179)
chr1 (50-112)||(14765129-14765192)
chr1 (47-147)||(3979312-3979414)
chr1 (47-112)||(14169634-14169700)
chr1 (47-147)||(40109376-40109478)
chr1 (47-112)||(40110687-40110753)
chr1 (150-231)||(48973338-48973419)
chr1 (47-148)||(3978059-3978162)
chr1 (51-105)||(19464619-19464674)
chr1 (47-136)||(22167794-22167885)
chr1 (152-231)||(34531805-34531884)
chr1 (47-112)||(2973043-2973109)
chr1 (47-112)||(14764244-14764310)
chr1 (47-112)||(24517649-24517715)
chr1 (47-139)||(25785983-25786077)
chr1 (162-231)||(25786119-25786189)
chr1 (47-112)||(36509826-36509892)
chr1 (47-112)||(40811210-40811276)
chr1 (157-207)||(47411368-47411418)
chr1 (47-112)||(50679856-50679922)
chr1 (162-231)||(52181200-52181270)
chr1 (177-234)||(13641415-13641472)
chr1 (47-105)||(40812653-40812712)
chr1 (47-112)||(8092613-8092679)
chr1 (47-112)||(13641272-13641338)
chr1 (47-108)||(13929310-13929372)
chr1 (47-112)||(24516349-24516415)
chr1 (157-231)||(25889388-25889462)
chr1 (47-147)||(26056146-26056248)
chr1 (47-112)||(47511382-47511448)
chr1 (47-112)||(51726879-51726945)
chr1 (47-146)||(13930675-13930776)
chr1 (70-146)||(14071203-14071280)
chr1 (71-112)||(20171197-20171238)
chr1 (71-112)||(25866586-25866627)
chr1 (71-112)||(32823498-32823539)
chr1 (47-112)||(45570334-45570399)
chr1 (150-231)||(48935005-48935086)
chr1 (162-206)||(16218399-16218443)
chr1 (47-106)||(51424266-51424326)
[»] chr7 (38 HSPs)
chr7 (144-231)||(33458443-33458530)
chr7 (47-112)||(10257421-10257487)
chr7 (47-112)||(132034-132100)
chr7 (50-142)||(10256141-10256235)
chr7 (47-116)||(19278368-19278438)
chr7 (47-147)||(19279611-19279713)
chr7 (47-112)||(35315257-35315323)
chr7 (47-112)||(8439781-8439847)
chr7 (47-112)||(27897707-27897773)
chr7 (157-231)||(30223872-30223946)
chr7 (144-238)||(43936029-43936123)
chr7 (150-231)||(2903942-2904023)
chr7 (47-114)||(33228862-33228930)
chr7 (151-231)||(36673731-36673811)
chr7 (156-207)||(35128112-35128163)
chr7 (47-148)||(43930334-43930437)
chr7 (47-112)||(17288255-17288321)
chr7 (47-112)||(19848869-19848935)
chr7 (47-112)||(22061830-22061896)
chr7 (47-112)||(25153673-25153739)
chr7 (157-231)||(30222792-30222866)
chr7 (47-112)||(36702792-36702858)
chr7 (47-112)||(40501490-40501556)
chr7 (153-231)||(41126382-41126460)
chr7 (47-108)||(43006400-43006462)
chr7 (70-112)||(46458748-46458790)
chr7 (71-108)||(1884280-1884317)
chr7 (71-112)||(40501399-40501440)
chr7 (47-107)||(40881106-40881167)
chr7 (48-112)||(46457086-46457151)
chr7 (47-107)||(47537080-47537141)
chr7 (71-112)||(47809621-47809662)
chr7 (47-106)||(4168890-4168950)
chr7 (163-207)||(22060615-22060659)
chr7 (47-114)||(29754719-29754787)
chr7 (47-149)||(40926516-40926620)
chr7 (47-114)||(43704623-43704691)
chr7 (156-184)||(48671222-48671250)
[»] chr5 (24 HSPs)
chr5 (150-231)||(40059221-40059302)
chr5 (31-147)||(32734125-32734248)
chr5 (46-112)||(22819584-22819651)
chr5 (47-112)||(42510129-42510195)
chr5 (47-148)||(12830936-12831039)
chr5 (49-148)||(12862916-12863017)
chr5 (47-137)||(32735488-32735580)
chr5 (47-112)||(224625-224691)
chr5 (47-112)||(8188235-8188301)
chr5 (47-112)||(15857653-15857719)
chr5 (47-112)||(24761756-24761822)
chr5 (47-112)||(42511701-42511767)
chr5 (47-107)||(11907201-11907262)
chr5 (47-107)||(24071483-24071544)
chr5 (142-231)||(26911290-26911379)
chr5 (49-112)||(19827175-19827239)
chr5 (150-189)||(15613644-15613683)
chr5 (47-104)||(1273383-1273441)
chr5 (47-112)||(5382957-5383023)
chr5 (47-108)||(12829585-12829647)
chr5 (150-231)||(20988830-20988911)
chr5 (71-112)||(37371218-37371259)
chr5 (47-114)||(6914845-6914913)
chr5 (47-106)||(19523998-19524058)
[»] scaffold0122 (2 HSPs)
scaffold0122 (50-183)||(17123-17258)
scaffold0122 (47-82)||(15965-16001)
[»] chr4 (39 HSPs)
chr4 (47-112)||(6139012-6139078)
chr4 (148-231)||(40146528-40146611)
chr4 (47-148)||(50530518-50530621)
chr4 (47-112)||(50531791-50531857)
chr4 (141-231)||(4373508-4373598)
chr4 (50-112)||(38417571-38417634)
chr4 (150-231)||(30671960-30672041)
chr4 (49-112)||(34438423-34438487)
chr4 (156-207)||(55953772-55953823)
chr4 (153-231)||(526614-526692)
chr4 (157-231)||(29834328-29834402)
chr4 (47-147)||(33377363-33377465)
chr4 (47-112)||(34439695-34439761)
chr4 (47-108)||(43419414-43419476)
chr4 (47-112)||(1273468-1273533)
chr4 (47-103)||(5417319-5417376)
chr4 (47-107)||(11482811-11482872)
chr4 (150-238)||(15446555-15446643)
chr4 (50-148)||(15786970-15787070)
chr4 (30-112)||(41348230-41348320)
chr4 (156-207)||(1273353-1273404)
chr4 (156-207)||(26788667-26788718)
chr4 (50-147)||(44159103-44159202)
chr4 (150-184)||(936357-936391)
chr4 (47-112)||(26202421-26202487)
chr4 (47-112)||(28103521-28103587)
chr4 (157-231)||(29833518-29833592)
chr4 (47-112)||(30683062-30683128)
chr4 (47-112)||(37560334-37560400)
chr4 (47-112)||(41349560-41349626)
chr4 (47-147)||(46796025-46796127)
chr4 (157-238)||(47606488-47606570)
chr4 (48-112)||(15787537-15787602)
chr4 (49-148)||(33376235-33376336)
chr4 (48-112)||(37559014-37559079)
chr4 (146-231)||(48206295-48206380)
chr4 (72-112)||(5687216-5687256)
chr4 (48-146)||(21104310-21104410)
chr4 (49-112)||(38419052-38419116)
[»] scaffold0178 (2 HSPs)
scaffold0178 (47-147)||(2264-2366)
scaffold0178 (145-231)||(2160-2246)
[»] scaffold0166 (1 HSPs)
scaffold0166 (47-112)||(4253-4319)
[»] scaffold0098 (1 HSPs)
scaffold0098 (47-139)||(42353-42447)
[»] scaffold0009 (2 HSPs)
scaffold0009 (47-107)||(205592-205653)
scaffold0009 (47-106)||(204551-204613)
[»] scaffold0046 (1 HSPs)
scaffold0046 (47-112)||(23421-23487)
[»] scaffold0025 (2 HSPs)
scaffold0025 (47-112)||(56735-56801)
scaffold0025 (71-112)||(54631-54672)
[»] scaffold0002 (1 HSPs)
scaffold0002 (151-189)||(458398-458436)
[»] scaffold0177 (1 HSPs)
scaffold0177 (150-231)||(1894-1975)
[»] scaffold0041 (1 HSPs)
scaffold0041 (47-107)||(85116-85177)


Alignment Details
Target: chr6 (Bit Score: 165; Significance: 4e-88; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 47 - 265
Target Start/End: Original strand, 14326168 - 14326388
Alignment:
Q  47 cccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataattct-ctatcgtttattattgtggtcctttccg 144  Q
    |||||||||||||||||||| ||| |||| ||||||||||||| |  |||||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  14326168 cccttaacttattttattttctcagtttgatcccttaattattgagcgtctcaatttggtcccataattcttctatcgtttactattgtggtcctttccg 14326267  T
Q  145 ttaaccccttgtccacttgtcatttaagattggtgatcaatggctgaatttagaaagcacacagatatacaatgaactcacaacataggatcatattcat 244  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  14326268 ttaacctcttatccacttgtcatttaagattggtgatcaatggctgaatttagaaagcgcacaaatatacaatgaactcacaacataggatcatattcat 14326367  T
Q  245 ttctattgaatttcttactaa 265  Q
    |||||||||||||||||||||    
T  14326368 ttctattgaatttcttactaa 14326388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 47 - 265
Target Start/End: Original strand, 14419178 - 14419398
Alignment:
Q  47 cccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataattct-ctatcgtttattattgtggtcctttccg 144  Q
    |||||||||||||||||||| ||| |||| ||||||||||||| |  |||||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  14419178 cccttaacttattttattttctcagtttgatcccttaattattgagcgtctcaatttggtcccataattcttctatcgtttactattgtggtcctttccg 14419277  T
Q  145 ttaaccccttgtccacttgtcatttaagattggtgatcaatggctgaatttagaaagcacacagatatacaatgaactcacaacataggatcatattcat 244  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  14419278 ttaacctcttatccacttgtcatttaagattggtgatcaatggctgaatttagaaagcgcacaaatatacaatgaactcacaacataggatcatattcat 14419377  T
Q  245 ttctattgaatttcttactaa 265  Q
    |||||||||||||||||||||    
T  14419378 ttctattgaatttcttactaa 14419398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 144 - 231
Target Start/End: Complemental strand, 16269600 - 16269513
Alignment:
Q  144 gttaaccccttgtccacttgtcatttaagattggtgatcaatggctgaatttagaaagcacacagatatacaatgaactcacaacata 231  Q
    ||||||||||| ||||| ||| ||||||||||||||||||| || || ||||||||||| |||| | ||||||||||| |||||||||    
T  16269600 gttaaccccttatccacgtgtaatttaagattggtgatcaagggttggatttagaaagcgcacaaacatacaatgaacgcacaacata 16269513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 28 - 147
Target Start/End: Complemental strand, 14328900 - 14328773
Alignment:
Q  28 aaataaggcttaatacatcccc------ttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataattc-tcta 119  Q
    ||||||||||||||||||||||      ||||||||||||||||| ||| |||| |||||||| |||||| ||||| ||||||||| |||||||| | |     
T  14328900 aaataaggcttaatacatccccagtcccttaacttattttattttctcagtttgatcccttaactattaagtgtcttaatttggtctcataattcttttg 14328801  T
Q  120 tcgtttattattgtggtcctttccgtta 147  Q
    ||||||| |||| ||||||| |||||||    
T  14328800 tcgtttactattttggtcctctccgtta 14328773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 28 - 147
Target Start/End: Complemental strand, 14421910 - 14421783
Alignment:
Q  28 aaataaggcttaatacatcccc------ttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataattc-tcta 119  Q
    ||||||||||||||||||||||      ||||||||||||||||| ||| |||| |||||||| |||||| ||||| ||||||||| |||||||| | |     
T  14421910 aaataaggcttaatacatccccagtcccttaacttattttattttctcagtttgatcccttaactattaagtgtcttaatttggtctcataattcttttg 14421811  T
Q  120 tcgtttattattgtggtcctttccgtta 147  Q
    ||||||| |||| ||||||| |||||||    
T  14421810 tcgtttactattttggtcctctccgtta 14421783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 47 - 112
Target Start/End: Original strand, 13800046 - 13800112
Alignment:
Q  47 cccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataa 112  Q
    |||||||||||||||||||| ||| ||||||||||||| |||||| ||| |||||||||||||||||    
T  13800046 cccttaacttattttattttctcagtttggtcccttaactattaattgtgtcaatttggtcccataa 13800112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 50 - 112
Target Start/End: Complemental strand, 31740370 - 31740307
Alignment:
Q  50 ttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataa 112  Q
    |||||||||||| | |||||| ||||||||||||| ||| || |||||||||||||||||||||    
T  31740370 ttaacttattttttgttttcaatttggtcccttaactataaagtgtctcaatttggtcccataa 31740307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 148
Target Start/End: Original strand, 9927621 - 9927723
Alignment:
Q  47 cccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataattctctatcgtttattattgtggtcctttccgt 145  Q
    ||||||||||||||| | |||| | ||||||||| ||| ||| || |||||||||||||||||||||   || |||||||| |||| ||||| | |||||    
T  9927621 cccttaacttattttttgtttttagtttggtcccctaactataaagtgtctcaatttggtcccataaacttcaatcgtttactattttggtcatctccgt 9927720  T
Q  146 taa 148  Q
    |||    
T  9927721 taa 9927723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 177 - 234
Target Start/End: Complemental strand, 22299861 - 22299804
Alignment:
Q  177 gtgatcaatggctgaatttagaaagcacacagatatacaatgaactcacaacatagga 234  Q
    ||||||||  |||| ||||||| ||| ||||||||||||||||||||| |||||||||    
T  22299861 gtgatcaagagctggatttagagagcgcacagatatacaatgaactcaaaacatagga 22299804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 156 - 207
Target Start/End: Complemental strand, 8412287 - 8412236
Alignment:
Q  156 tccacttgtcatttaagattggtgatcaatggctgaatttagaaagcacaca 207  Q
    ||||| |||||||||||||| ||||||||||| ||||||||  |||||||||    
T  8412287 tccacatgtcatttaagattcgtgatcaatggttgaatttaagaagcacaca 8412236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 8412417 - 8412351
Alignment:
Q  47 cccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataa 112  Q
    ||||||||||||||| | |||||| ||| ||||| ||| ||| || |||||||||||||||||||||    
T  8412417 cccttaacttattttttgttttcaatttagtcccctaactataaagtgtctcaatttggtcccataa 8412351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 12202393 - 12202327
Alignment:
Q  47 cccttaacttattttattttttcattt-ggtcccttaattattaactgtctcaatttggtcccataa 112  Q
    ||||||||||||||| |  |||||||| |||||||||| | | ||| ||||||||||||||||||||    
T  12202393 cccttaacttattttttaatttcattttggtcccttaactttaaaccgtctcaatttggtcccataa 12202327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 90
Target Start/End: Complemental strand, 16251675 - 16251633
Alignment:
Q  49 cttaacttattttattttttca-tttggtcccttaattattaa 90  Q
    ||||| |||||||||||||||| ||||||||||||||||||||    
T  16251675 cttaaattattttattttttcagtttggtcccttaattattaa 16251633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 22300004 - 22299938
Alignment:
Q  47 cccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataa 112  Q
    |||||||||||||||   |||||| ||||||||| ||| ||| || |||||||||||||||||||||    
T  22300004 cccttaacttatttttggttttcactttggtcccctaactataaagtgtctcaatttggtcccataa 22299938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 1757595 - 1757534
Alignment:
Q  47 cccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcc 107  Q
    |||||||||||||||| ||| ||| ||||||||||||| ||||||  || ||||||||||||    
T  1757595 cccttaacttattttaatttctcagtttggtcccttaactattaaacgtttcaatttggtcc 1757534  T

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Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 114
Target Start/End: Complemental strand, 12203372 - 12203304
Alignment:
Q  47 cccttaacttattttattttttcattt-ggtcccttaattattaactgtctcaatttggtcccataatt 114  Q
    |||||||||||||||    |||||||| ||||| |||| | | ||||||||||||||||||||||||||    
T  12203372 cccttaacttatttttgaatttcattttggtcctttaactttaaactgtctcaatttggtcccataatt 12203304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 145; Significance: 3e-76; HSPs: 37)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 47 - 265
Target Start/End: Complemental strand, 23561226 - 23561007
Alignment:
Q  47 cccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataattct-ctatcgtttattattgtggtcctttccg 144  Q
    |||||||||||||||||||| ||| |||| ||||||||||||||| ||||| |||||||||| |||||||| ||  |||||| ||||||| |||||||||    
T  23561226 cccttaacttattttattttctcagtttgatcccttaattattaagtgtcttaatttggtcctataattcttctgacgtttactattgtg-tcctttccg 23561128  T
Q  145 ttaaccccttgtccacttgtcatttaagattggtgatcaatggctgaatttagaaagcacacagatatacaatgaactcacaacataggatcatattcat 244  Q
    |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||    
T  23561127 ttaaccccttgtccacatgtcatttaagattggtgatcaatgactgaatttagaaagcatacagatatataatgaacttacaacataggatcatattcat 23561028  T
Q  245 ttctattgaatttcttactaa 265  Q
    |||||||||||||||||||||    
T  23561027 ttctattgaatttcttactaa 23561007  T

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Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 47 - 238
Target Start/End: Original strand, 12060673 - 12060866
Alignment:
Q  47 cccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataattctctatc-gtttattattgtggtcctttccg 144  Q
    |||||||||||||||||||| ||| ||| ||| ||||| |||||| ||||||||||||| | ||||| | | |  | ||||| |||| ||||||| |||     
T  12060673 cccttaacttattttattttctcagtttagtctcttaactattaagtgtctcaatttggcctcataactattttgccgtttactattttggtcctctcca 12060772  T
Q  145 ttaaccccttgtccacttgtcatttaagattggtgatcaatggctgaatttagaaagcacacagatatacaatgaactcacaacataggatcat 238  Q
    | |||  | | ||||| ||||| ||||||||||||||||||||||||||||||||||||| || ||||||||| ||||| ||||| | ||||||    
T  12060773 tcaacttcatatccacatgtcacttaagattggtgatcaatggctgaatttagaaagcacgcaaatatacaataaactcgcaacagatgatcat 12060866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 47 - 147
Target Start/End: Original strand, 23559834 - 23559936
Alignment:
Q  47 cccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataattc-tctatcgtttattattgtggtcctttccg 144  Q
    |||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||| ||||||||||| ||| ||||||| |||| ||||||| ||||    
T  23559834 cccttaacttattttattttctcagtttggtcccttaattattaagtgtctcaatttgatcccataattcttctgtcgtttactattttggtcctctccg 23559933  T
Q  145 tta 147  Q
    |||    
T  23559934 tta 23559936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 47 - 110
Target Start/End: Complemental strand, 12062485 - 12062421
Alignment:
Q  47 cccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccat 110  Q
    |||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||    
T  12062485 cccttaacttattttattttttcagtttggtcccttaactattaagtgtctcaatttggtcccat 12062421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 144 - 231
Target Start/End: Original strand, 48866275 - 48866362
Alignment:
Q  144 gttaaccccttgtccacttgtcatttaagattggtgatcaatggctgaatttagaaagcacacagatatacaatgaactcacaacata 231  Q
    ||||||||||||| ||| |||||||| |||||| ||||||| | ||| ||||||||||| |||| |||||||||| ||||||||||||    
T  48866275 gttaaccccttgttcacgtgtcattttagattgatgatcaaggactggatttagaaagcgcacaaatatacaatggactcacaacata 48866362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 48 - 148
Target Start/End: Complemental strand, 35174482 - 35174380
Alignment:
Q  48 ccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataattc-tctatcgtttattattgtggtcctttccgt 145  Q
    ||||||||||||||||||||||| ||||||||||||| |||||| ||| ||||  ||||||||||| || ||||||||||| |||| ||||| |||| ||    
T  35174482 ccttaacttattttattttttcattttggtcccttaactattaagtgtttcaaaatggtcccataactcttctatcgtttactattttggtcatttctgt 35174383  T
Q  146 taa 148  Q
    |||    
T  35174382 taa 35174380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 47 - 147
Target Start/End: Complemental strand, 48867531 - 48867429
Alignment:
Q  47 cccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataattctctat-cgtttattattgtggtcctttccg 144  Q
    |||||||||||||||||||| ||| ||||||||||||| |||||| ||| ||||||||||||||| | ||| | | |||||| || |||||||||||| |    
T  48867531 cccttaacttattttattttctcaatttggtcccttaactattaagtgtgtcaatttggtcccattagtctttctacgtttactaatgtggtcctttctg 48867432  T
Q  145 tta 147  Q
    |||    
T  48867431 tta 48867429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 149 - 231
Target Start/End: Complemental strand, 49334315 - 49334233
Alignment:
Q  149 ccccttgtccacttgtcatttaagattggtgatcaatggctgaatttagaaagcacacagatatacaatgaactcacaacata 231  Q
    |||||||||||| | |||||||| |||||||||  ||||||| |||| || ||| |||| |||||||||||||||||||||||    
T  49334315 ccccttgtccacatttcatttaatattggtgattgatggctggatttggacagcgcacaaatatacaatgaactcacaacata 49334233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 47 - 147
Target Start/End: Complemental strand, 54654067 - 54653965
Alignment:
Q  47 cccttaacttattttattttttcattt-ggtcccttaattattaactgtctcaatttggtcccataattc-tctatcgtttattattgtggtcctttccg 144  Q
    |||||||||||||||    |||||||| |||||||||| ||| || |||||||||||||||||||||||| ||| ||||||| |||| ||||||| ||||    
T  54654067 cccttaacttatttttggatttcattttggtcccttaactataaagtgtctcaatttggtcccataattcttctgtcgtttactattttggtcctctccg 54653968  T
Q  145 tta 147  Q
    |||    
T  54653967 tta 54653965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 156 - 235
Target Start/End: Complemental strand, 51825592 - 51825512
Alignment:
Q  156 tccacttgtcatttaagattggtgatcaatggctgaatttagaaagcacaca-gatatacaatgaactcacaacataggat 235  Q
    ||||| ||||| |||||||||||||||||||| |||||||| |||||||||| || ||||  |||||||||| ||||||||    
T  51825592 tccacgtgtcagttaagattggtgatcaatggttgaatttaaaaagcacacatgacatactgtgaactcacagcataggat 51825512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 47 - 112
Target Start/End: Original strand, 21127940 - 21128006
Alignment:
Q  47 cccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataa 112  Q
    |||||||||||||||||||||||| |||| || ||||| |||||| ||| |||||||||||||||||    
T  21127940 cccttaacttattttattttttcagtttgatctcttaactattaagtgtgtcaatttggtcccataa 21128006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 137
Target Start/End: Complemental strand, 43346547 - 43346456
Alignment:
Q  48 ccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataattc-tctatcgtttattattgtggtc 137  Q
    ||||||||||||||||||| ||| |||| |||||||| |||||| ||| ||||||||||| ||||| || ||| |||||||| ||| |||||    
T  43346547 ccttaacttattttattttctcagtttgatcccttaactattaagtgtgtcaatttggtctcataactcttctgtcgtttatcattttggtc 43346456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 112
Target Start/End: Original strand, 30431390 - 30431456
Alignment:
Q  47 cccttaacttattttattttttcattt-ggtcccttaattattaactgtctcaatttggtcccataa 112  Q
    |||||||||||||||    |||||||| |||||||||||| | ||||||||||||||||||||||||    
T  30431390 cccttaacttatttttgaatttcattttggtcccttaattttaaactgtctcaatttggtcccataa 30431456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 116
Target Start/End: Original strand, 43101909 - 43101979
Alignment:
Q  47 cccttaacttattttattttttcattt-ggtcccttaattattaactgtctcaatttggtcccataattct 116  Q
    |||||||||||||||   ||||||||| |||||  ||||||| || |||||||||||||||||||||||||    
T  43101909 cccttaacttatttttggttttcattttggtcctctaattataaagtgtctcaatttggtcccataattct 43101979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 112
Target Start/End: Original strand, 43345334 - 43345400
Alignment:
Q  47 cccttaacttattttattttttcattt-ggtcccttaattattaactgtctcaatttggtcccataa 112  Q
    |||||||||||||||||||| ||| || |||||||||| ||| || ||| |||||||||||||||||    
T  43345334 cccttaacttattttattttctcagttaggtcccttaactataaaatgtttcaatttggtcccataa 43345400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 150 - 231
Target Start/End: Complemental strand, 52293499 - 52293418
Alignment:
Q  150 cccttgtccacttgtcatttaagattggtgatcaatggctgaatttagaaagcacacagatatacaatgaactcacaacata 231  Q
    ||||||||||| ||||||||||||||||||||||| ||||  ||||  |||| |||||  ||||||||   |||||||||||    
T  52293499 cccttgtccacatgtcatttaagattggtgatcaagggctatatttgaaaagtacacaagtatacaataggctcacaacata 52293418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 47 - 148
Target Start/End: Original strand, 25583129 - 25583232
Alignment:
Q  47 cccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataattc-tctatcgtttattattgtggtcctttccg 144  Q
    |||||||||||||||   |||||| ||||||||| ||| ||||||  |||||||||||||||||||| || |||  |||||| |||| ||||||| || |    
T  25583129 cccttaacttatttttgattttcactttggtcccctaactattaaacgtctcaatttggtcccataagtcttctgccgtttactattttggtcctctctg 25583228  T
Q  145 ttaa 148  Q
    ||||    
T  25583229 ttaa 25583232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 112
Target Start/End: Original strand, 8371235 - 8371301
Alignment:
Q  47 cccttaacttattttattttttcattt-ggtcccttaattattaactgtctcaatttggtcccataa 112  Q
    ||||||||||||||| | ||||||||| |||||| ||| ||| || |||||||||||||| ||||||    
T  8371235 cccttaacttattttttgttttcattttggtcccctaactataaaatgtctcaatttggttccataa 8371301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 8372717 - 8372651
Alignment:
Q  47 cccttaacttattttattttttcattt-ggtcccttaattattaactgtctcaatttggtcccataa 112  Q
    |||||||||||||||   ||||||||| |||||| ||| ||| || |||||||||||||||||||||    
T  8372717 cccttaacttatttttggttttcattttggtcccctaactataaagtgtctcaatttggtcccataa 8372651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 10987754 - 10987688
Alignment:
Q  47 cccttaacttattttattttttcattt-ggtcccttaattattaactgtctcaatttggtcccataa 112  Q
    |||||||||||||||   ||||||||| |||||| ||| ||| || |||||||||||||||||||||    
T  10987754 cccttaacttatttttggttttcattttggtcccctaactataaagtgtctcaatttggtcccataa 10987688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 184
Target Start/End: Complemental strand, 29537111 - 29537077
Alignment:
Q  150 cccttgtccacttgtcatttaagattggtgatcaa 184  Q
    ||||||||||| |||||||||||||||||||||||    
T  29537111 cccttgtccacatgtcatttaagattggtgatcaa 29537077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 41387534 - 41387468
Alignment:
Q  47 cccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataa 112  Q
    |||||||||||||||   |||||| ||||||||| ||| ||| || |||||||||||||||||||||    
T  41387534 cccttaacttatttttggttttcaatttggtcccctaactataaaatgtctcaatttggtcccataa 41387468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 139
Target Start/End: Complemental strand, 42633987 - 42633893
Alignment:
Q  47 cccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataattc-tctatcgtttattattgtggtcct 139  Q
    |||||||||||||||   |||||| ||||||||| ||| |||  | ||||||||||||||||||||| || | | |||||||||||| |||||||    
T  42633987 cccttaacttatttttgattttcaatttggtcccctaactatagagtgtctcaatttggtcccataaatcttatgtcgtttattattttggtcct 42633893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 238
Target Start/End: Original strand, 47854620 - 47854714
Alignment:
Q  144 gttaaccccttgtccacttgtcatttaagattggtgatcaatggctgaatttagaaagcacacagatatacaatgaactcacaacataggatcat 238  Q
    ||||| ||||||||||| |||||||||||||| |||||||| |  |  ||||  |||| || ||  ||||||||| |||||||||||| ||||||    
T  47854620 gttaaacccttgtccacatgtcatttaagatttgtgatcaaggattagatttgaaaagtacgcaagtatacaatggactcacaacatatgatcat 47854714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 184
Target Start/End: Complemental strand, 47855313 - 47855279
Alignment:
Q  150 cccttgtccacttgtcatttaagattggtgatcaa 184  Q
    ||||||||||| |||||||||||||||||||||||    
T  47855313 cccttgtccacatgtcatttaagattggtgatcaa 47855279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 184
Target Start/End: Original strand, 48825952 - 48825986
Alignment:
Q  150 cccttgtccacttgtcatttaagattggtgatcaa 184  Q
    ||||||||||| |||||||||||||||||||||||    
T  48825952 cccttgtccacatgtcatttaagattggtgatcaa 48825986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 51214267 - 51214201
Alignment:
Q  47 cccttaacttattttattttttcattt-ggtcccttaattattaactgtctcaatttggtcccataa 112  Q
    |||||||||||||||    |||||||| |||||||||| | | ||||||||||||||||||||||||    
T  51214267 cccttaacttatttttgaatttcattttggtcccttaactttaaactgtctcaatttggtcccataa 51214201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 51401452 - 51401386
Alignment:
Q  47 cccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataa 112  Q
    |||||||||||||||   |||||| ||||||||| ||| ||| || |||||||||||||||||||||    
T  51401452 cccttaacttatttttggttttcactttggtcccctaactataaagtgtctcaatttggtcccataa 51401386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 147
Target Start/End: Complemental strand, 51825722 - 51825620
Alignment:
Q  47 cccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataattc-tctatcgtttattattgtggtcctttccg 144  Q
    |||||||||||||||    ||||| ||||||||||||| ||| || ||| ||||||||||||||||| || ||| ||||||| |||| ||||| | ||||    
T  51825722 cccttaacttatttttggatttcactttggtcccttaactataaagtgtttcaatttggtcccataaatcttctgtcgtttactattttggtcatatccg 51825623  T
Q  145 tta 147  Q
    |||    
T  51825622 tta 51825620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 107
Target Start/End: Original strand, 2088857 - 2088918
Alignment:
Q  47 cccttaacttattttattttttcattt-ggtcccttaattattaactgtctcaatttggtcc 107  Q
    ||||||| |||||||| ||| ||| || ||||||||||||||||| ||| ||||||||||||    
T  2088857 cccttaatttattttaatttctcagttaggtcccttaattattaaatgtttcaatttggtcc 2088918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 184
Target Start/End: Original strand, 7820533 - 7820566
Alignment:
Q  151 ccttgtccacttgtcatttaagattggtgatcaa 184  Q
    |||||||||| |||||||||||||||||||||||    
T  7820533 ccttgtccacatgtcatttaagattggtgatcaa 7820566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 116
Target Start/End: Complemental strand, 26798982 - 26798937
Alignment:
Q  71 tttggtcccttaattattaactgtctcaatttggtcccataattct 116  Q
    ||||||||| ||| ||| || |||||||||||||||||||||||||    
T  26798982 tttggtcccctaactataaaatgtctcaatttggtcccataattct 26798937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 107
Target Start/End: Original strand, 50150736 - 50150797
Alignment:
Q  47 cccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcc 107  Q
    |||||||||||||||| ||| ||| ||||||| ||||| |||||| ||| ||||||||||||    
T  50150736 cccttaacttattttaatttctcagtttggtcacttaactattaaatgtttcaatttggtcc 50150797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 106
Target Start/End: Original strand, 1031831 - 1031891
Alignment:
Q  47 cccttaacttattttattttttcatt-tggtcccttaattattaactgtctcaatttggtc 106  Q
    |||||||||||||||| ||| ||| | ||||||||||| |||||| ||| |||||||||||    
T  1031831 cccttaacttattttaatttctcagtgtggtcccttaactattaaatgtttcaatttggtc 1031891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 147
Target Start/End: Original strand, 29536775 - 29536831
Alignment:
Q  92 tgtctcaatttggtcccataattc-tctatcgtttattattgtggtcctttccgtta 147  Q
    ||||||||||||||||||||| || ||| ||||||| |||| ||||||| |||||||    
T  29536775 tgtctcaatttggtcccataaatcttctttcgtttactattttggtcctctccgtta 29536831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 231
Target Start/End: Original strand, 39287606 - 39287670
Alignment:
Q  167 tttaagattggtgatcaatggctgaatttagaaagcacacagatatacaatgaactcacaacata 231  Q
    |||||||||||||||||| ||||  ||||  |||| ||||| ||||||||||  |||||||||||    
T  39287606 tttaagattggtgatcaagggctagatttgaaaagtacacaaatatacaatgggctcacaacata 39287670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 112
Target Start/End: Original strand, 48866158 - 48866222
Alignment:
Q  49 cttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataa 112  Q
    |||||||||||||||||| ||| ||| |||||| || |||||| ||| |||||||||||| ||||    
T  48866158 cttaacttattttattttctcagtttagtccctgaactattaagtgtgtcaatttggtcctataa 48866222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 47 - 238
Target Start/End: Complemental strand, 8096646 - 8096453
Alignment:
Q  47 cccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataattctct-atcgtttattattgtggtcctttccg 144  Q
    |||||||||||||||||||||||| ||| ||| ||||| ||||||  |||| ||||||||| ||||| ||| | | |||||| |||| ||||||| ||||    
T  8096646 cccttaacttattttattttttcagtttagtctcttaactattaagcgtcttaatttggtctcataactcttttaccgtttactattttggtcctctccg 8096547  T
Q  145 ttaaccccttgtccacttgtcatttaagattggtgatcaatggctgaatttagaaagcacacagatatacaatgaactcacaacataggatcat 238  Q
    | ||| || ||| ||| ||||||||||||||||||||||||||||| ||||||||||||| || ||||||||| ||||| ||||| | ||||||    
T  8096546 tcaactccatgttcacatgtcatttaagattggtgatcaatggctggatttagaaagcacgcaaatatacaataaactcgcaacacatgatcat 8096453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 47 - 147
Target Start/End: Original strand, 8095361 - 8095463
Alignment:
Q  47 cccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataattc-tctatcgtttattattgtggtcctttccg 144  Q
    |||||||||||||||||||| ||| ||||||||||||| |||||| ||||||||||||||||||| | || | | ||||||| |||| ||||||||||||    
T  8095361 cccttaacttattttattttctcagtttggtcccttaactattaagtgtctcaatttggtcccattactcttttgtcgtttactattttggtcctttccg 8095460  T
Q  145 tta 147  Q
    |||    
T  8095461 tta 8095463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 48 - 147
Target Start/End: Complemental strand, 13367150 - 13367049
Alignment:
Q  48 ccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataattc-tctatcgtttattattgtggtcctttccgt 145  Q
    ||||||||||||||||||||||| ||||||||||||| ||| || ||| | ||||||||||||||| || |||  |||||| |||| ||||||| |||||    
T  13367150 ccttaacttattttattttttcactttggtcccttaactataaagtgttttaatttggtcccataaatcttctgccgtttactattttggtcctctccgt 13367051  T
Q  146 ta 147  Q
    ||    
T  13367050 ta 13367049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 143 - 230
Target Start/End: Complemental strand, 36071360 - 36071273
Alignment:
Q  143 cgttaaccccttgtccacttgtcatttaagattggtgatcaatggctgaatttagaaagcacacagatatacaatgaactcacaacat 230  Q
    ||||||||| || ||||| ||| |||||| |||||||||||| ||||| |||||||  || |||| ||||||||| | ||||||||||    
T  36071360 cgttaaccctttatccacgtgttatttaaaattggtgatcaagggctggatttagagggcgcacaaatatacaataacctcacaacat 36071273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 139
Target Start/End: Complemental strand, 2421394 - 2421300
Alignment:
Q  47 cccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataattc-tctatcgtttattattgtggtcct 139  Q
    |||||||||||||||| ||| ||| ||| ||||||||| |||||| ||| |||||||||||||| || || |||  ||||||||||| |||||||    
T  2421394 cccttaacttattttaatttatcagtttagtcccttaaatattaagtgtttcaatttggtcccagaaatcttctgccgtttattattttggtcct 2421300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 112
Target Start/End: Original strand, 22619910 - 22619976
Alignment:
Q  47 cccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataa 112  Q
    |||||||||||||||||||| ||| |||| |||||||| | |||| ||| |||||||||||||||||    
T  22619910 cccttaacttattttattttctcagtttgatcccttaacttttaagtgtgtcaatttggtcccataa 22619976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 22621235 - 22621169
Alignment:
Q  47 cccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataa 112  Q
    |||||||||||||||||||| ||| |||| |||||||| |||||| |||  ||||||||||||||||    
T  22621235 cccttaacttattttattttctcagtttgatcccttaactattaagtgtggcaatttggtcccataa 22621169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 112
Target Start/End: Original strand, 34616144 - 34616210
Alignment:
Q  47 cccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataa 112  Q
    |||||||||||||||||||| ||| |||| || ||||| ||| || |||||||||||||||||||||    
T  34616144 cccttaacttattttattttctcagtttgatctcttaactataaagtgtctcaatttggtcccataa 34616210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 47 - 112
Target Start/End: Original strand, 3237433 - 3237498
Alignment:
Q  47 cccttaacttattttattttttcatttggtcccttaattattaactgtctcaatttggtcccataa 112  Q
    |||||||||||||||    |||||||||||||| ||| | | ||||||||||||||||||||||||    
T  3237433 cccttaacttatttttggatttcatttggtcccctaactttaaactgtctcaatttggtcccataa 3237498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 49 - 148
Target Start/End: Original strand, 20308622 - 20308723
Alignment:
Q  49 cttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataattc-tctatcgtttattattgtggtcctttccgtt 146  Q
    |||||||||||||||||| ||| ||| ||  ||||| |||||| ||||||||||||||| ||||| || ||| ||||||| |||| ||||| ||||| ||    
T  20308622 cttaacttattttattttctcagtttagtatcttaactattaagtgtctcaatttggtctcataactcttctgtcgtttactattttggtcatttccatt 20308721  T
Q  147 aa 148  Q
    ||    
T  20308722 aa 20308723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 49 - 148
Target Start/End: Original strand, 21095255 - 21095356
Alignment:
Q  49 cttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataattc-tctatcgtttattattgtggtcctttccgtt 146  Q
    |||||||||||||||||| ||| ||| ||  ||||| |||||| ||||||||||||||| ||||| || ||| ||||||| |||| ||||| ||||| ||    
T  21095255 cttaacttattttattttctcagtttagtatcttaactattaagtgtctcaatttggtctcataactcttctgtcgtttactattttggtcatttccatt 21095354  T
Q  147 aa 148  Q
    ||    
T  21095355 aa 21095356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 48 - 112
Target Start/End: Complemental strand, 31625484 - 31625419
Alignment:
Q  48 ccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataa 112  Q
    ||||||||||||||   |||||| ||||||||| ||||||| || |||||||||||||||||||||    
T  31625484 ccttaacttatttttggttttcaatttggtcccctaattataaagtgtctcaatttggtcccataa 31625419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 162 - 207
Target Start/End: Original strand, 38589971 - 38590016
Alignment:
Q  162 tgtcatttaagattggtgatcaatggctgaatttagaaagcacaca 207  Q
    ||||||||||||||||||||||| || |||||||| ||||||||||    
T  38589971 tgtcatttaagattggtgatcaacggttgaatttaaaaagcacaca 38590016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 145
Target Start/End: Complemental strand, 24069547 - 24069447
Alignment:
Q  47 cccttaacttattttattttttcatttgg-tcccttaattattaactgtctcaatttggtcccataattc-tctatcgtttattattgtggtcctttccg 144  Q
    |||||||||||||||   ||||||||| | |||||||| ||| || ||||||||||||||||||||| || |||  ||||||  ||| ||||||||||||    
T  24069547 cccttaacttatttttggttttcattttgatcccttaactataaagtgtctcaatttggtcccataactcttctgccgtttaccattttggtcctttccg 24069448  T
Q  145 t 145  Q
    |    
T  24069447 t 24069447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 47 - 112
Target Start/End: Original strand, 35943922 - 35943989
Alignment:
Q  47 cccttaacttattttattttttcattt-ggtcccttaattattaac-tgtctcaatttggtcccataa 112  Q
    |||||||||||||||   ||||||||| |||||||||||||| ||  |||||||||||||||||||||    
T  35943922 cccttaacttatttttggttttcattttggtcccttaattataaaaatgtctcaatttggtcccataa 35943989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 112
Target Start/End: Original strand, 24068345 - 24068411
Alignment:
Q  47 cccttaacttattttattttttcattt-ggtcccttaattattaactgtctcaatttggtcccataa 112  Q
    |||||||||||||||   ||||||||| |||||| ||| ||| || |||||||||||||||||||||    
T  24068345 cccttaacttatttttggttttcattttggtcccctaactataaagtgtctcaatttggtcccataa 24068411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 147
Target Start/End: Original strand, 31623921 - 31624023
Alignment:
Q  47 cccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataattc-tctatcgtttattattgtggtcctttccg 144  Q
    |||||||||||||||   |||||| ||||||||| ||| ||| || ||| ||||||||||||||||| || | | |||||||||||| | ||||| ||||    
T  31623921 cccttaacttatttttggttttcaatttggtcccctaactataaagtgtttcaatttggtcccataaatcttatgtcgtttattattttagtcctctccg 31624020  T
Q  145 tta 147  Q
    |||    
T  31624021 tta 31624023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 38591108 - 38591042
Alignment:
Q  47 cccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataa 112  Q
    |||||||||||||||   |||||| ||||||||| ||| ||| || |||||||||||||||||||||    
T  38591108 cccttaacttatttttgattttcaatttggtcccctaactataaagtgtctcaatttggtcccataa 38591042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 108
Target Start/End: Complemental strand, 43278022 - 43277960
Alignment:
Q  47 cccttaacttattttat-tttttcatttggtcccttaattattaactgtctcaatttggtccc 108  Q
    ||||||||||||||| | ||||| |||||||||| ||| ||| || |||||||||||||||||    
T  43278022 cccttaacttattttttatttttaatttggtcccctaactataaaatgtctcaatttggtccc 43277960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 43386803 - 43386737
Alignment:
Q  47 cccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataa 112  Q
    |||||||||||||||   |||||| ||||||||| ||| ||| || |||||||||||||||||||||    
T  43386803 cccttaacttatttttggttttcagtttggtcccctaactataaaatgtctcaatttggtcccataa 43386737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 107
Target Start/End: Original strand, 4534049 - 4534110
Alignment:
Q  47 cccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcc 107  Q
    |||||||||||||||| ||| ||| |||||||| |||| |||||| ||| ||||||||||||    
T  4534049 cccttaacttattttaatttctcagtttggtcctttaaatattaaatgtttcaatttggtcc 4534110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 107
Target Start/End: Original strand, 16346114 - 16346175
Alignment:
Q  47 cccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcc 107  Q
    |||||||||||||||| ||| ||| ||||||||||||| ||||||  || ||||||||||||    
T  16346114 cccttaacttattttaatttctcagtttggtcccttaactattaaacgtttcaatttggtcc 16346175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 111
Target Start/End: Complemental strand, 35945538 - 35945473
Alignment:
Q  47 cccttaacttattttattttttcatttg-gtcccttaattattaactgtctcaatttggtcccata 111  Q
    ||||||||||||||| | |||||||||  ||||||||| ||| || ||||||| ||||||||||||    
T  35945538 cccttaacttattttttgttttcattttagtcccttaactataaaatgtctcactttggtcccata 35945473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 45195905 - 45195844
Alignment:
Q  47 cccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcc 107  Q
    |||||||||||||||| ||| ||| ||||||||||||| ||| || ||||||||||| ||||    
T  45195905 cccttaacttattttaatttctcagtttggtcccttaaatataaagtgtctcaatttagtcc 45195844  T

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Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 107
Target Start/End: Complemental strand, 9190542 - 9190482
Alignment:
Q  48 ccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcc 107  Q
    ||||||||||||||| ||| ||| ||| ||||||||| |||||| ||| ||||||||||||    
T  9190542 ccttaacttattttaatttctcagtttagtcccttaactattaaatgtttcaatttggtcc 9190482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 106
Target Start/End: Original strand, 41521332 - 41521392
Alignment:
Q  47 cccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtc 106  Q
    |||||||||||||||||||||||| |||| |||||||| ||| || ||| | |||||||||    
T  41521332 cccttaacttattttattttttcagtttgatcccttaactataaagtgtgttaatttggtc 41521392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 50 - 238
Target Start/End: Complemental strand, 14510607 - 14510417
Alignment:
Q  50 ttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataattct-ctatcgtttattattgtggtcctttccgtta 147  Q
    ||||||||||||||||| | | ||| ||||||||| |||||| |||||||||||||||| |||| ||| ||  |||||| |||| | ||| | | |||||    
T  14510607 ttaacttattttattttcttagtttagtcccttaactattaagtgtctcaatttggtcctataactcttctgccgtttactattttagtcatcttcgtta 14510508  T
Q  148 accccttgtccacttgtcatttaagattggtgatcaatggctgaatttagaaagcacacagatatacaatgaactcacaacataggatcat 238  Q
    ||||| |||| |  ||||||||||||||| ||||||||| ||| |||||||||||||||| |||||||||| |||||||||||| ||||||    
T  14510507 accccctgtctatgtgtcatttaagattgatgatcaatgactggatttagaaagcacacaaatatacaatgcactcacaacatatgatcat 14510417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 48 - 112
Target Start/End: Complemental strand, 7490295 - 7490230
Alignment:
Q  48 ccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataa 112  Q
    ||||||||||||||||||| ||| |||||||| |||||||| || |||||||||||||||||||||    
T  7490295 ccttaacttattttattttctcagtttggtcctttaattataaaatgtctcaatttggtcccataa 7490230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 150 - 231
Target Start/End: Original strand, 41312640 - 41312721
Alignment:
Q  150 cccttgtccacttgtcatttaagattggtgatcaatggctgaatttagaaagcacacagatatacaatgaactcacaacata 231  Q
    ||||||||||| ||||||||||||||||||||||| || |  ||||  |||| |||||| ||||||||| ||||||||||||    
T  41312640 cccttgtccacatgtcatttaagattggtgatcaagggttagatttgaaaagtacacaggtatacaatggactcacaacata 41312721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 47 - 148
Target Start/End: Original strand, 14509224 - 14509327
Alignment:
Q  47 cccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataattc-tctatcgtttattattgtggtcctttccg 144  Q
    |||||||||||||||||||| ||| ||||||||||||| ||| || ||| | |||| |||||||||| || ||| ||||||| |||| ||||||| ||||    
T  14509224 cccttaacttattttattttctcactttggtcccttaactataaagtgttttaattcggtcccataaatcttctgtcgtttactattttggtcctctccg 14509323  T
Q  145 ttaa 148  Q
    ||||    
T  14509324 ttaa 14509327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 47 - 112
Target Start/End: Original strand, 3532209 - 3532275
Alignment:
Q  47 cccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataa 112  Q
    ||||||| |||||||||||||||| |||| ||||||||||||||| ||| ||||||||||| |||||    
T  3532209 cccttaatttattttattttttcagtttgatcccttaattattaagtgtgtcaatttggtcacataa 3532275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 47 - 108
Target Start/End: Original strand, 15850127 - 15850189
Alignment:
Q  47 cccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtccc 108  Q
    |||||||||||||||||||||||| ||||||| ||||| ||| || |||||||||||||||||    
T  15850127 cccttaacttattttattttttcagtttggtctcttaactataaagtgtctcaatttggtccc 15850189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 231
Target Start/End: Original strand, 33836909 - 33836990
Alignment:
Q  150 cccttgtccacttgtcatttaagattggtgatcaatggctgaatttagaaagcacacagatatacaatgaactcacaacata 231  Q
    ||||||||||| ||||||||||||||||||||||| ||||  ||||  |||| |||||  |||||||||  |||||||||||    
T  33836909 cccttgtccacatgtcatttaagattggtgatcaagggctagatttgaaaagtacacaagtatacaatgggctcacaacata 33836990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 50 - 112
Target Start/End: Complemental strand, 3533724 - 3533661
Alignment:
Q  50 ttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataa 112  Q
    ||||||||||||||||||| | ||||||||||||| |||||| ||| ||||||||||| |||||    
T  3533724 ttaacttattttatttttttagtttggtcccttaactattaagtgtgtcaatttggtctcataa 3533661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 150 - 231
Target Start/End: Original strand, 2305680 - 2305761
Alignment:
Q  150 cccttgtccacttgtcatttaagattggtgatcaatggctgaatttagaaagcacacagatatacaatgaactcacaacata 231  Q
    ||||||||||| |||||||||||||||| |||||| ||||  ||||  |||| |||||  |||||||||  |||||||||||    
T  2305680 cccttgtccacatgtcatttaagattggagatcaagggctagatttgaaaagtacacaagtatacaatgggctcacaacata 2305761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 71 - 147
Target Start/End: Original strand, 12852926 - 12853003
Alignment:
Q  71 tttggtcccttaattattaactgtctcaatttggtcccataattc-tctatcgtttattattgtggtcctttccgtta 147  Q
    ||||||||| ||| ||| || ||||||||||||||||||||| || ||||||||||| |||| ||||| | |||||||    
T  12852926 tttggtcccctaactataaagtgtctcaatttggtcccataaatcttctatcgtttactattttggtcatctccgtta 12853003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 146 - 231
Target Start/End: Original strand, 42246726 - 42246811
Alignment:
Q  146 taaccccttgtccacttgtcatttaagattggtgatcaatggctgaatttagaaagcacacagatatacaatgaactcacaacata 231  Q
    |||||| || ||||| | ||| ||||||| | ||||||| || || ||||||||||| |||| |||||||| ||||||||||||||    
T  42246726 taacccattatccacgtatcacttaagatggatgatcaagggttggatttagaaagcgcacatatatacaacgaactcacaacata 42246811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 50 - 112
Target Start/End: Original strand, 25569787 - 25569850
Alignment:
Q  50 ttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataa 112  Q
    ||||||||||||||||||| | ||||||||||||| |||||  ||| ||||||||||| |||||    
T  25569787 ttaacttattttatttttttagtttggtcccttaactattacttgtgtcaatttggtcacataa 25569850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 184
Target Start/End: Original strand, 3665364 - 3665398
Alignment:
Q  150 cccttgtccacttgtcatttaagattggtgatcaa 184  Q
    ||||||||||| |||||||||||||||||||||||    
T  3665364 cccttgtccacatgtcatttaagattggtgatcaa 3665398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 108
Target Start/End: Original strand, 5564074 - 5564136
Alignment:
Q  47 cccttaacttattttattttttcattt-ggtcccttaattattaactgtctcaatttggtccc 108  Q
    |||||||||||||||    |||||||| |||||||||||||| || |||||||||||||||||    
T  5564074 cccttaacttatttttgaatttcattttggtcccttaattataaagtgtctcaatttggtccc 5564136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 108
Target Start/End: Complemental strand, 5565246 - 5565184
Alignment:
Q  47 cccttaacttattttattttttcattt-ggtcccttaattattaactgtctcaatttggtccc 108  Q
    |||||||||||||||    |||||||| |||||||||||||| || |||||||||||||||||    
T  5565246 cccttaacttatttttgaatttcattttggtcccttaattataaagtgtctcaatttggtccc 5565184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 7038433 - 7038367
Alignment:
Q  47 cccttaacttattttattttttcattt-ggtcccttaattattaactgtctcaatttggtcccataa 112  Q
    |||||||||||||||    |||||||| |||||||||| ||| || |||||||||||||||||||||    
T  7038433 cccttaacttatttttggatttcattttggtcccttaactataaagtgtctcaatttggtcccataa 7038367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 12854205 - 12854139
Alignment:
Q  47 cccttaacttattttattttttcattt-ggtcccttaattattaactgtctcaatttggtcccataa 112  Q
    |||||||||||||||    |||||||| |||||||||| ||| || |||||||||||||||||||||    
T  12854205 cccttaacttatttttagatttcattttggtcccttaactataaagtgtctcaatttggtcccataa 12854139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 112
Target Start/End: Original strand, 43015554 - 43015620
Alignment:
Q  47 cccttaacttattttattttttcattt-ggtcccttaattattaactgtctcaatttggtcccataa 112  Q
    |||||||||||||||    |||||||| |||||||||| | | ||||||||||||||||||||||||    
T  43015554 cccttaacttatttttgaatttcattttggtcccttaactttaaactgtctcaatttggtcccataa 43015620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 112
Target Start/End: Original strand, 5435199 - 5435240
Alignment:
Q  71 tttggtcccttaattattaactgtctcaatttggtcccataa 112  Q
    ||||||||||||| | | ||||||||||||||||||||||||    
T  5435199 tttggtcccttaactttaaactgtctcaatttggtcccataa 5435240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 218
Target Start/End: Complemental strand, 6209039 - 6208974
Alignment:
Q  153 ttgtccacttgtcatttaagattggtgatcaatggctgaatttagaaagcacacagatatacaatg 218  Q
    |||||||| ||||||||||||||||||||||| || |  ||||| |||| |||||  |||||||||    
T  6209039 ttgtccacatgtcatttaagattggtgatcaagggttagatttaaaaagtacacaagtatacaatg 6208974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 33553466 - 33553405
Alignment:
Q  47 cccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcc 107  Q
    |||||||||||||||| ||||||| ||||||| ||||| ||||||  || ||||||||||||    
T  33553466 cccttaacttattttaatttttcagtttggtctcttaactattaaacgtttcaatttggtcc 33553405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 7e-28; HSPs: 45)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 144 - 231
Target Start/End: Original strand, 2971833 - 2971920
Alignment:
Q  144 gttaaccccttgtccacttgtcatttaagattggtgatcaatggctgaatttagaaagcacacagatatacaatgaactcacaacata 231  Q
    ||||||||||||||||| |||||||||||||||| |||||| ||||| |||||||||||||||| ||||| |||||||||||||||||    
T  2971833 gttaaccccttgtccacgtgtcatttaagattggcgatcaagggctggatttagaaagcacacaaatataaaatgaactcacaacata 2971920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 142 - 238
Target Start/End: Complemental strand, 40812595 - 40812500
Alignment:
Q  142 ccgttaaccccttgtccacttgtcatttaagattggtgatcaatggctgaatttagaaagcacacagatatacaatgaactcacaacataggatcat 238  Q
    |||||||||  |||||||| ||||| ||||||| |||||||||| | || |||||||||||||||| |||||||||||||||||||||||| |||||    
T  40812595 ccgttaaccttttgtccacatgtcagttaagat-ggtgatcaattgttggatttagaaagcacacaaatatacaatgaactcacaacatagaatcat 40812500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 145 - 230
Target Start/End: Complemental strand, 21278199 - 21278114
Alignment:
Q  145 ttaaccccttgtccacttgtcatttaagattggtgatcaatggctgaatttagaaagcacacagatatacaatgaactcacaacat 230  Q
    ||||||| || ||||| ||||||||||||||||||||||| | |||||||||||  || |||| ||||||||| ||||||||||||    
T  21278199 ttaaccctttatccacgtgtcatttaagattggtgatcaaagactgaatttagagggcgcacaaatatacaataaactcacaacat 21278114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 47 - 147
Target Start/End: Complemental strand, 19466306 - 19466204
Alignment:
Q  47 cccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataattc-tctatcgtttattattgtggtcctttccg 144  Q
    ||||| |||||||||||||| ||| |||||||| |||| ||| || ||||||||||||||||||||| || ||| ||||||| ||||||||| || ||||    
T  19466306 ccctttacttattttattttctcagtttggtcctttaactataaagtgtctcaatttggtcccataaatcttctgtcgtttactattgtggttctctccg 19466207  T
Q  145 tta 147  Q
    |||    
T  19466206 tta 19466204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 47 - 147
Target Start/End: Complemental strand, 36511432 - 36511330
Alignment:
Q  47 cccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataattc-tctatcgtttattattgtggtcctttccg 144  Q
    ||||||| |||||||||||| ||| ||||||||||||| ||| || ||||||||||||||||||||| || ||| ||||||| |||| ||||| | ||||    
T  36511432 cccttaatttattttattttctcagtttggtcccttaactataaagtgtctcaatttggtcccataaatcttctgtcgtttactattttggtcatctccg 36511333  T
Q  145 tta 147  Q
    |||    
T  36511332 tta 36511330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 150 - 231
Target Start/End: Complemental strand, 35684179 - 35684098
Alignment:
Q  150 cccttgtccacttgtcatttaagattggtgatcaatggctgaatttagaaagcacacagatatacaatgaactcacaacata 231  Q
    ||||||||||| |||||||||||||||| |||||| ||||  ||||| |||| |||||  |||||||||| |||||||||||    
T  35684179 cccttgtccacatgtcatttaagattggagatcaagggctagatttaaaaagtacacaagtatacaatgagctcacaacata 35684098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 50 - 112
Target Start/End: Complemental strand, 14765192 - 14765129
Alignment:
Q  50 ttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataa 112  Q
    ||||||||||||||||| ||| ||||||||||||| |||||| ||| |||||||||||||||||    
T  14765192 ttaacttattttattttctcagtttggtcccttaactattaagtgtgtcaatttggtcccataa 14765129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 47 - 147
Target Start/End: Complemental strand, 3979414 - 3979312
Alignment:
Q  47 cccttaacttattttattttttcattt-ggtcccttaattattaactgtctcaatttggtcccataattc-tctatcgtttattattgtggtcctttccg 144  Q
    |||||||||||||||    |||||||| |||||||||| ||| || |||||||||||||||||||||||| |||  |||||| |||| ||||||| ||||    
T  3979414 cccttaacttatttttggatttcattttggtcccttaactataaagtgtctcaatttggtcccataattcttctgccgtttactattttggtcctctccg 3979315  T
Q  145 tta 147  Q
    |||    
T  3979314 tta 3979312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 47 - 112
Target Start/End: Original strand, 14169634 - 14169700
Alignment:
Q  47 cccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataa 112  Q
    |||||||||||||||||||| ||| |||||||| |||| ||| || |||||||||||||||||||||    
T  14169634 cccttaacttattttattttctcagtttggtcctttaactataaaatgtctcaatttggtcccataa 14169700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 47 - 147
Target Start/End: Original strand, 40109376 - 40109478
Alignment:
Q  47 cccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataattctctat-cgtttattattgtggtcctttccg 144  Q
    |||||||||||||||||||| ||| |||| |||||||| | |||| ||| ||||||||||||||||| |||  || |||||| || |||||||||||| |    
T  40109376 cccttaacttattttattttctcagtttgatcccttaacttttaagtgtgtcaatttggtcccataaatcttcatccgtttactaatgtggtcctttctg 40109475  T
Q  145 tta 147  Q
    |||    
T  40109476 tta 40109478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 40110753 - 40110687
Alignment:
Q  47 cccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataa 112  Q
    |||||||||||||||||||| ||| |||| |||||||| |||||| ||| |||||||||||||||||    
T  40110753 cccttaacttattttattttctcagtttgatcccttaactattaagtgtgtcaatttggtcccataa 40110687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 231
Target Start/End: Original strand, 48973338 - 48973419
Alignment:
Q  150 cccttgtccacttgtcatttaagattggtgatcaatggctgaatttagaaagcacacagatatacaatgaactcacaacata 231  Q
    ||||||||||| ||||||||||||||||||||||| ||||  ||||  |||| |||||  |||||||||  |||||||||||    
T  48973338 cccttgtccacatgtcatttaagattggtgatcaagggctagatttgaaaagtacacaagtatacaatgggctcacaacata 48973419  T

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Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 47 - 148
Target Start/End: Original strand, 3978059 - 3978162
Alignment:
Q  47 cccttaacttattttattttttcattt-ggtcccttaattattaactgtctcaatttggtcccataattc-tctatcgtttattattgtggtcctttccg 144  Q
    |||||||||||||||    |||||||| ||||| |||| ||| || |||||||||||| ||||||||||| ||| ||||||| |||| ||||||| ||||    
T  3978059 cccttaacttatttttgaatttcattttggtcctttaactataaagtgtctcaatttgatcccataattcttctgtcgtttactattttggtcctctccg 3978158  T
Q  145 ttaa 148  Q
    ||||    
T  3978159 ttaa 3978162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 51 - 105
Target Start/End: Original strand, 19464619 - 19464674
Alignment:
Q  51 taacttattttattttttca-tttggtcccttaattattaactgtctcaatttggt 105  Q
    |||||||||||||||||||| ||||||||||||||||| || ||| ||||||||||    
T  19464619 taacttattttattttttcagtttggtcccttaattataaagtgtttcaatttggt 19464674  T

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Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 47 - 136
Target Start/End: Original strand, 22167794 - 22167885
Alignment:
Q  47 cccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataattc-tctatcgtttattattgtggt 136  Q
    |||||||||||||||| ||| ||| ||| ||||||||| |||||| ||| ||||||||||||||||| || |||  ||||||||||| ||||    
T  22167794 cccttaacttattttaatttctcagtttagtcccttaaatattaagtgtttcaatttggtcccataaatcttctgccgtttattattttggt 22167885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 152 - 231
Target Start/End: Original strand, 34531805 - 34531884
Alignment:
Q  152 cttgtccacttgtcatttaagattggtgatcaatggctgaatttagaaagcacacagatatacaatgaactcacaacata 231  Q
    ||||||||  ||||||||||||||||||||||| ||||  ||||  |||| ||||| ||||||||||  |||||||||||    
T  34531805 cttgtccaaatgtcatttaagattggtgatcaagggctagatttgaaaagtacacaaatatacaatgggctcacaacata 34531884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 2973109 - 2973043
Alignment:
Q  47 cccttaacttattttattttttcatttg-gtcccttaattattaactgtctcaatttggtcccataa 112  Q
    ||||||||||||||| | |||||||||  ||||||||||||| || |||||||||||||||| ||||    
T  2973109 cccttaacttattttttgttttcattttagtcccttaattataaagtgtctcaatttggtcctataa 2973043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 112
Target Start/End: Original strand, 14764244 - 14764310
Alignment:
Q  47 cccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataa 112  Q
    |||||||||||||||||||||| | |||| ||||||||||||||| ||| | ||||||||| |||||    
T  14764244 cccttaacttattttatttttttagtttgatcccttaattattaagtgtgttaatttggtctcataa 14764310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 24517715 - 24517649
Alignment:
Q  47 cccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataa 112  Q
    |||||||||||||||||||| ||| |||  |||||||||| |||| ||| |||||||||||||||||    
T  24517715 cccttaacttattttattttctcagtttaatcccttaatttttaagtgtgtcaatttggtcccataa 24517649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 139
Target Start/End: Original strand, 25785983 - 25786077
Alignment:
Q  47 cccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataattc-tctatcgtttattattgtggtcct 139  Q
    |||||||||||||||   |||||| ||||||||| ||| ||| || ||||||||||||||||||||| || | | |||||||||||| |||||||    
T  25785983 cccttaacttatttttggttttcaatttggtcccctaactataaagtgtctcaatttggtcccataaatcttatgtcgtttattattttggtcct 25786077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 231
Target Start/End: Original strand, 25786119 - 25786189
Alignment:
Q  162 tgtcatttaagattggtgatcaatggctgaatttagaaagcacaca-gatatacaatgaactcacaacata 231  Q
    ||||||||||||||||||||||| || || ||||| |||||||||| || |||| ||| ||||||||||||    
T  25786119 tgtcatttaagattggtgatcaacggttggatttaaaaagcacacatgacataccatggactcacaacata 25786189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 112
Target Start/End: Original strand, 36509826 - 36509892
Alignment:
Q  47 cccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataa 112  Q
    |||||||||||||||||||| ||| ||||||||||||| ||| || ||| |||||||||| ||||||    
T  36509826 cccttaacttattttattttctcagtttggtcccttaactataaagtgtttcaatttggttccataa 36509892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 112
Target Start/End: Original strand, 40811210 - 40811276
Alignment:
Q  47 cccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataa 112  Q
    ||||||||||||| |||||| ||| |||| |||||||| |||||| |||||||||||| ||||||||    
T  40811210 cccttaacttattctattttctcagtttgatcccttaactattaaatgtctcaatttgatcccataa 40811276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 207
Target Start/End: Complemental strand, 47411418 - 47411368
Alignment:
Q  157 ccacttgtcatttaagattggtgatcaatggctgaatttagaaagcacaca 207  Q
    |||| ||||||||||||||||||||||| || |||||||| ||||||||||    
T  47411418 ccacatgtcatttaagattggtgatcaacggttgaatttaaaaagcacaca 47411368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 50679922 - 50679856
Alignment:
Q  47 cccttaacttatttt-attttttcatttggtcccttaattattaactgtctcaatttggtcccataa 112  Q
    ||||||||||||||| | |||||  ||||||||||||| ||| || |||||||||||||||||||||    
T  50679922 cccttaacttatttttagtttttattttggtcccttaactataaagtgtctcaatttggtcccataa 50679856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 231
Target Start/End: Complemental strand, 52181270 - 52181200
Alignment:
Q  162 tgtcatttaagattggtgatcaatggctgaatttagaaagcacaca-gatatacaatgaactcacaacata 231  Q
    ||||||||||||||||||||||| || || ||||| |||||||||| || ||||  |||||||||||||||    
T  52181270 tgtcatttaagattggtgatcaacggttggatttaaaaagcacacatgacataccgtgaactcacaacata 52181200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 177 - 234
Target Start/End: Original strand, 13641415 - 13641472
Alignment:
Q  177 gtgatcaatggctgaatttagaaagcacacagatatacaatgaactcacaacatagga 234  Q
    ||||||||  |||| ||||||| ||| ||||||||||||||||||||| |||||||||    
T  13641415 gtgatcaagagctggatttagagagcgcacagatatacaatgaactcaaaacatagga 13641472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 47 - 105
Target Start/End: Complemental strand, 40812712 - 40812653
Alignment:
Q  47 cccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggt 105  Q
    ||||||||||||||||||||   | ||||||||||||| |||||| ||||||||||||||    
T  40812712 cccttaacttattttattttcctagtttggtcccttaactattaagtgtctcaatttggt 40812653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 112
Target Start/End: Original strand, 8092613 - 8092679
Alignment:
Q  47 cccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataa 112  Q
    |||||||||||||||||||| ||| | | ||||||||| |||||| ||| |||||||||| ||||||    
T  8092613 cccttaacttattttattttctcagtgtagtcccttaactattaagtgtatcaatttggttccataa 8092679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 112
Target Start/End: Original strand, 13641272 - 13641338
Alignment:
Q  47 cccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataa 112  Q
    |||||||||||||||   |||||| ||||||||| ||| ||| || |||||||||||||||||||||    
T  13641272 cccttaacttatttttggttttcactttggtcccctaactataaagtgtctcaatttggtcccataa 13641338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 108
Target Start/End: Original strand, 13929310 - 13929372
Alignment:
Q  47 cccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtccc 108  Q
    |||||||||||||||   |||||| ||||||||||||| ||| || |||||||||||||||||    
T  13929310 cccttaacttatttttggttttcaatttggtcccttaactataaagtgtctcaatttggtccc 13929372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 112
Target Start/End: Original strand, 24516349 - 24516415
Alignment:
Q  47 cccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataa 112  Q
    |||||||||||||||||||| | | |||| |||||||| |||||| ||| ||||||||||| |||||    
T  24516349 cccttaacttattttattttctgagtttgatcccttaactattaagtgtgtcaatttggtctcataa 24516415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 231
Target Start/End: Complemental strand, 25889462 - 25889388
Alignment:
Q  157 ccacttgtcatttaagattggtgatcaatggctgaatttagaaagcacacagatatacaatgaactcacaacata 231  Q
    |||| ||||||||||||||||||||||| ||||  ||||  |||  |||||  ||||||||| ||||||||||||    
T  25889462 ccacatgtcatttaagattggtgatcaagggctagatttgaaaaatacacaagtatacaatggactcacaacata 25889388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 147
Target Start/End: Complemental strand, 26056248 - 26056146
Alignment:
Q  47 cccttaacttattttattttttcattt-ggtcccttaattattaactgtctcaatttggtcccataattc-tctatcgtttattattgtggtcctttccg 144  Q
    |||||||||||||||    |||||||| |||||| ||| ||| || ||||||||||||||||||||| || | | ||||||| |||| ||||||| ||||    
T  26056248 cccttaacttatttttggatttcattttggtcccctaactataaagtgtctcaatttggtcccataaatcttttgtcgtttactattttggtcctctccg 26056149  T
Q  145 tta 147  Q
    |||    
T  26056148 tta 26056146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 112
Target Start/End: Original strand, 47511382 - 47511448
Alignment:
Q  47 cccttaacttattttattttttcatttgg-tcccttaattattaactgtctcaatttggtcccataa 112  Q
    |||||||||||||||    |||||||| | |||||||||| | ||||||||||||||||||||||||    
T  47511382 cccttaacttatttttgaatttcattttgatcccttaattttaaactgtctcaatttggtcccataa 47511448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 51726945 - 51726879
Alignment:
Q  47 cccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataa 112  Q
    |||||||||||||||||||| ||| |||||||  |||| ||| || |||||||||||||| ||||||    
T  51726945 cccttaacttattttattttctcagtttggtcatttaactataaagtgtctcaatttggttccataa 51726879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 146
Target Start/End: Complemental strand, 13930776 - 13930675
Alignment:
Q  47 cccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataattc-tctatcgtttattattgtggtcctttccg 144  Q
    |||||||||||||||   |||||| ||||||||  ||| ||| || ||||||||||||||||||||| || | | |||||||  ||| ||||||||||||    
T  13930776 cccttaacttatttttggttttcaatttggtcctctaactataaagtgtctcaatttggtcccataagtcttatgtcgtttaccattttggtcctttccg 13930677  T
Q  145 tt 146  Q
    ||    
T  13930676 tt 13930675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 146
Target Start/End: Complemental strand, 14071280 - 14071203
Alignment:
Q  70 atttggtcccttaattattaactgtctcaatttggtcccataattc-tctatcgtttattattgtggtcctttccgtt 146  Q
    |||||||||  ||| ||| || ||||||||||||||||||||| || ||| |||||||  ||| ||||||||||||||    
T  14071280 atttggtcctctaactataaagtgtctcaatttggtcccataagtcttctgtcgtttaccattttggtcctttccgtt 14071203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 112
Target Start/End: Complemental strand, 20171238 - 20171197
Alignment:
Q  71 tttggtcccttaattattaactgtctcaatttggtcccataa 112  Q
    ||||||||||||| | | ||||||||||||||||||||||||    
T  20171238 tttggtcccttaactttaaactgtctcaatttggtcccataa 20171197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 112
Target Start/End: Original strand, 25866586 - 25866627
Alignment:
Q  71 tttggtcccttaattattaactgtctcaatttggtcccataa 112  Q
    ||||||||||||| | | ||||||||||||||||||||||||    
T  25866586 tttggtcccttaactttaaactgtctcaatttggtcccataa 25866627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 112
Target Start/End: Original strand, 32823498 - 32823539
Alignment:
Q  71 tttggtcccttaattattaactgtctcaatttggtcccataa 112  Q
    ||||||||||||| | | ||||||||||||||||||||||||    
T  32823498 tttggtcccttaactttaaactgtctcaatttggtcccataa 32823539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 112
Target Start/End: Original strand, 45570334 - 45570399
Alignment:
Q  47 cccttaacttattttattttttcatttggtcccttaattattaactgtctcaatttggtcccataa 112  Q
    |||||||||||||||||||||   |||||| |||||| ||| || |||||||| |||||| |||||    
T  45570334 cccttaacttattttatttttcagtttggttccttaactatcaaatgtctcaacttggtctcataa 45570399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 231
Target Start/End: Complemental strand, 48935086 - 48935005
Alignment:
Q  150 cccttgtccacttgtcatttaagattggtgatcaatggctgaatttagaaagcacacagatatacaatgaactcacaacata 231  Q
    ||||||||||| | ||||||||||||| ||||||| ||||  ||||  |||| |||||  |||||||||  |||||||||||    
T  48935086 cccttgtccacatatcatttaagattgatgatcaagggctagatttgaaaagtacacaagtatacaatgggctcacaacata 48935005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 206
Target Start/End: Complemental strand, 16218443 - 16218399
Alignment:
Q  162 tgtcatttaagattggtgatcaatggctgaatttagaaagcacac 206  Q
    |||||||||| |||||||||||| || |||||||| |||||||||    
T  16218443 tgtcatttaaaattggtgatcaacggttgaatttaaaaagcacac 16218399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 106
Target Start/End: Original strand, 51424266 - 51424326
Alignment:
Q  47 cccttaacttattttattttttcattt-ggtcccttaattattaactgtctcaatttggtc 106  Q
    |||||||||||||||    |||||||| |||||||||||||| || |||||||||||||||    
T  51424266 cccttaacttatttttggatttcattttggtcccttaattataaagtgtctcaatttggtc 51424326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 38)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 144 - 231
Target Start/End: Original strand, 33458443 - 33458530
Alignment:
Q  144 gttaaccccttgtccacttgtcatttaagattggtgatcaatggctgaatttagaaagcacacagatatacaatgaactcacaacata 231  Q
    ||||||||||||||||| |||||||||||||| |||||||| ||||| |||||| |||| |||| |||||||||| ||| ||||||||    
T  33458443 gttaaccccttgtccacgtgtcatttaagattagtgatcaagggctggatttagtaagcgcacaaatatacaatggacttacaacata 33458530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 10257487 - 10257421
Alignment:
Q  47 cccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataa 112  Q
    |||||||||||||||||||| ||| |||| |||||||| |||||| |||||||||||||||||||||    
T  10257487 cccttaacttattttattttctcaatttgatcccttaactattaagtgtctcaatttggtcccataa 10257421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 132100 - 132034
Alignment:
Q  47 cccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataa 112  Q
    |||||||||||||||||||| ||| ||||||||||||| |||||| ||| || ||||||||||||||    
T  132100 cccttaacttattttattttctcagtttggtcccttaactattaagtgtgtcgatttggtcccataa 132034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 50 - 142
Target Start/End: Original strand, 10256141 - 10256235
Alignment:
Q  50 ttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataattc-tctatcgtttattattgtggtcctttc 142  Q
    ||||||||||||||||| ||| ||||||||||||| |||||| ||||||||  ||||| ||||| || ||||||||||| |||| ||||| ||||    
T  10256141 ttaacttattttattttctcagtttggtcccttaactattaagtgtctcaaaatggtctcataactcttctatcgtttagtattttggtcatttc 10256235  T

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Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 47 - 116
Target Start/End: Original strand, 19278368 - 19278438
Alignment:
Q  47 cccttaacttattttattttttcattt-ggtcccttaattattaactgtctcaatttggtcccataattct 116  Q
    |||||||||||||||    |||||||| |||||||||||||| || |||||||||||||||||||||||||    
T  19278368 cccttaacttatttttggatttcattttggtcccttaattataaagtgtctcaatttggtcccataattct 19278438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 47 - 147
Target Start/End: Complemental strand, 19279713 - 19279611
Alignment:
Q  47 cccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccat-aattctctatcgtttattattgtggtcctttccg 144  Q
    |||||||||||||||   |||||| ||||||||| ||| ||| || ||||||||||||||||||| |||| | | ||||||| |||| ||||||||||||    
T  19279713 cccttaacttatttttggttttcactttggtcccctaactataaagtgtctcaatttggtcccataaattttttgtcgtttactattttggtcctttccg 19279614  T
Q  145 tta 147  Q
    |||    
T  19279613 tta 19279611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 35315323 - 35315257
Alignment:
Q  47 cccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataa 112  Q
    |||||||||||||||||||| ||| |||| ||||||||||||||| | | |||||||||||||||||    
T  35315323 cccttaacttattttattttctcagtttgatcccttaattattaagtatgtcaatttggtcccataa 35315257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 112
Target Start/End: Original strand, 8439781 - 8439847
Alignment:
Q  47 cccttaacttattttattttttcattt-ggtcccttaattattaactgtctcaatttggtcccataa 112  Q
    |||||||||||||||    |||||||| |||||||||||| | ||||||||||||||||||||||||    
T  8439781 cccttaacttatttttgaatttcattttggtcccttaattgtaaactgtctcaatttggtcccataa 8439847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 112
Target Start/End: Original strand, 27897707 - 27897773
Alignment:
Q  47 cccttaacttattttatttt-ttcatttggtcccttaattattaactgtctcaatttggtcccataa 112  Q
    |||||||||||||||||||| || ||||| | |||||||||| || ||| |||||||||||||||||    
T  27897707 cccttaacttattttattttcttaatttgattccttaattataaaatgtttcaatttggtcccataa 27897773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 231
Target Start/End: Complemental strand, 30223946 - 30223872
Alignment:
Q  157 ccacttgtcatttaagattggtgatcaatggctgaatttagaaagcacacagatatacaatgaactcacaacata 231  Q
    |||| ||||||||||||||||||||||| ||||  ||||  |||| |||||  ||||||||| ||||||||||||    
T  30223946 ccacatgtcatttaagattggtgatcaagggctagatttgaaaagtacacaagtatacaatggactcacaacata 30223872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 238
Target Start/End: Complemental strand, 43936123 - 43936029
Alignment:
Q  144 gttaaccccttgtccacttgtcatttaagattggtgatcaatggctgaatttagaaagcacacagatatacaatgaactcacaacataggatcat 238  Q
    |||||||  |||||||| |||||||||| |||| |||||||||| |  ||||  |||| |||||  |||||||||| ||||||||||| ||||||    
T  43936123 gttaaccaattgtccacatgtcatttaaaattgatgatcaatggttagatttgaaaagtacacaagtatacaatgagctcacaacatatgatcat 43936029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 150 - 231
Target Start/End: Complemental strand, 2904023 - 2903942
Alignment:
Q  150 cccttgtccacttgtcatttaagattggtgatcaatggctgaatttagaaagcacacagatatacaatgaactcacaacata 231  Q
    ||||||||| | ||||||||||||||||||||||||| || |||||  |||  |||||  |||||||||  |||||||||||    
T  2904023 cccttgtccgcatgtcatttaagattggtgatcaatgactaaatttgaaaattacacaagtatacaatgggctcacaacata 2903942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 114
Target Start/End: Original strand, 33228862 - 33228930
Alignment:
Q  47 cccttaacttattttattttttcattt-ggtcccttaattattaactgtctcaatttggtcccataatt 114  Q
    |||||||||||||||    |||||||| |||||||||||| | |||| |||||||||||||||||||||    
T  33228862 cccttaacttatttttgaatttcattttggtcccttaattttaaactatctcaatttggtcccataatt 33228930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 231
Target Start/End: Complemental strand, 36673811 - 36673731
Alignment:
Q  151 ccttgtccacttgtcatttaagattggtgatcaatggctgaatttagaaagcacacagatatacaatgaactcacaacata 231  Q
    |||||||||| ||||||||||||||||||||||| ||||   |||  |||| |||||  |||||||||  |||||||||||    
T  36673811 ccttgtccacatgtcatttaagattggtgatcaagggctaggtttgaaaagtacacaagtatacaatgggctcacaacata 36673731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 156 - 207
Target Start/End: Complemental strand, 35128163 - 35128112
Alignment:
Q  156 tccacttgtcatttaagattggtgatcaatggctgaatttagaaagcacaca 207  Q
    ||||| ||||||||||||||||||||||| || || ||||| ||||||||||    
T  35128163 tccacgtgtcatttaagattggtgatcaacggttggatttaaaaagcacaca 35128112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 47 - 148
Target Start/End: Original strand, 43930334 - 43930437
Alignment:
Q  47 cccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataattc-tctatcgtttattattgtggtcctttccg 144  Q
    |||||||||||||||   |||||| ||||||||| ||| ||||||  ||||||||||||||| |||| || ||| ||||||| |||| ||||||| || |    
T  43930334 cccttaacttatttttgattttcactttggtcccctaactattaaacgtctcaatttggtcctataaatcttctgtcgtttactattttggtcctctctg 43930433  T
Q  145 ttaa 148  Q
    ||||    
T  43930434 ttaa 43930437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 17288321 - 17288255
Alignment:
Q  47 cccttaacttattttattttttcattt-ggtcccttaattattaactgtctcaatttggtcccataa 112  Q
    ||||||||||||||| | |||| |||| |||||| ||| ||| || |||||||||||||||||||||    
T  17288321 cccttaacttattttttgttttaattttggtcccctaactataaagtgtctcaatttggtcccataa 17288255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 19848935 - 19848869
Alignment:
Q  47 cccttaacttattttattttttcattt-ggtcccttaattattaactgtctcaatttggtcccataa 112  Q
    |||||||||||||||    |||||||| |||||||||| ||| || |||||||||||||||||||||    
T  19848935 cccttaacttatttttggatttcattttggtcccttaactataaagtgtctcaatttggtcccataa 19848869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 22061896 - 22061830
Alignment:
Q  47 cccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataa 112  Q
    ||||||||||||||| | |||||| ||||||||| ||| ||| ||  ||||||||||||||||||||    
T  22061896 cccttaacttattttgtgttttcaatttggtcccctaactataaaacgtctcaatttggtcccataa 22061830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 112
Target Start/End: Original strand, 25153673 - 25153739
Alignment:
Q  47 cccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataa 112  Q
    |||||||||||||||   |||||| ||||||||| ||| ||| || |||||||||||||||||||||    
T  25153673 cccttaacttattttcgattttcaatttggtcccctaactataaagtgtctcaatttggtcccataa 25153739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 231
Target Start/End: Original strand, 30222792 - 30222866
Alignment:
Q  157 ccacttgtcatttaagattggtgatcaatggctgaatttagaaagcacacagatatacaatgaactcacaacata 231  Q
    |||| ||||||||||||||||||||||| | ||  ||||  |||| |||||  ||||||||| ||||||||||||    
T  30222792 ccacatgtcatttaagattggtgatcaaggactagatttgaaaagtacacaagtatacaatggactcacaacata 30222866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 112
Target Start/End: Original strand, 36702792 - 36702858
Alignment:
Q  47 cccttaacttattttattttttcattt-ggtcccttaattattaactgtctcaatttggtcccataa 112  Q
    |||||||||||||||    |||||||| |||||||||| | | ||||||||||||||||||||||||    
T  36702792 cccttaacttatttttagatttcattttggtcccttaactttaaactgtctcaatttggtcccataa 36702858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 40501556 - 40501490
Alignment:
Q  47 cccttaacttattttattttttcattt-ggtcccttaattattaactgtctcaatttggtcccataa 112  Q
    |||||||||||||||    |||||||| |||||||||||| | ||| ||||||||||||||||||||    
T  40501556 cccttaacttatttttgaatttcattttggtcccttaattttaaaccgtctcaatttggtcccataa 40501490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 231
Target Start/End: Original strand, 41126382 - 41126460
Alignment:
Q  153 ttgtccacttgtcatttaagattggtgatcaatggctgaatttagaaagcacacagatatacaatgaactcacaacata 231  Q
    |||||||| ||||||||||||||||||||||| ||||  ||||  |||| |||||  ||||||||   |||||||||||    
T  41126382 ttgtccacatgtcatttaagattggtgatcaagggctagatttgaaaagtacacaagtatacaataggctcacaacata 41126460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 108
Target Start/End: Original strand, 43006400 - 43006462
Alignment:
Q  47 cccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtccc 108  Q
    |||||||||||||||   |||||| ||||||||| ||| |||||| |||||||||||||||||    
T  43006400 cccttaacttatttttggttttcaatttggtcccctaactattaagtgtctcaatttggtccc 43006462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 112
Target Start/End: Complemental strand, 46458790 - 46458748
Alignment:
Q  70 atttggtcccttaattattaactgtctcaatttggtcccataa 112  Q
    |||||||||||||| ||| || |||||||||||||||||||||    
T  46458790 atttggtcccttaactataaagtgtctcaatttggtcccataa 46458748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 108
Target Start/End: Original strand, 1884280 - 1884317
Alignment:
Q  71 tttggtcccttaattattaactgtctcaatttggtccc 108  Q
    ||||||||||||||||| || |||||||||||||||||    
T  1884280 tttggtcccttaattataaaatgtctcaatttggtccc 1884317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 112
Target Start/End: Complemental strand, 40501440 - 40501399
Alignment:
Q  71 tttggtcccttaattattaactgtctcaatttggtcccataa 112  Q
    ||||||||||||||| | ||| ||||||||||||||||||||    
T  40501440 tttggtcccttaattttaaaccgtctcaatttggtcccataa 40501399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 107
Target Start/End: Original strand, 40881106 - 40881167
Alignment:
Q  47 cccttaacttattttattttttcatt-tggtcccttaattattaactgtctcaatttggtcc 107  Q
    |||||||||||||||| ||| ||| | ||||||||||| ||||||| || ||||||||||||    
T  40881106 cccttaacttattttaatttctcagtgtggtcccttaactattaaccgtttcaatttggtcc 40881167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 112
Target Start/End: Original strand, 46457086 - 46457151
Alignment:
Q  48 ccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataa 112  Q
    ||||||||||||||   |||||| |||| |||||||| ||| || |||||||||||||||||||||    
T  46457086 ccttaacttatttttggttttcaatttgatcccttaactataaagtgtctcaatttggtcccataa 46457151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 47537141 - 47537080
Alignment:
Q  47 cccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcc 107  Q
    ||||||||||||||||  || ||| ||||||||||||| |||||| ||| ||||||||||||    
T  47537141 cccttaacttattttaacttctcagtttggtcccttaactattaaatgtttcaatttggtcc 47537080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 112
Target Start/End: Complemental strand, 47809662 - 47809621
Alignment:
Q  71 tttggtcccttaattattaactgtctcaatttggtcccataa 112  Q
    ||||||||||||| | | ||||||||||||||||||||||||    
T  47809662 tttggtcccttaactttaaactgtctcaatttggtcccataa 47809621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 106
Target Start/End: Complemental strand, 4168950 - 4168890
Alignment:
Q  47 cccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtc 106  Q
    |||||||||||||||||||| ||| |||| |||||||| ||| || ||| |||||||||||    
T  4168950 cccttaacttattttattttctcagtttgatcccttaactataaagtgtgtcaatttggtc 4168890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 22060615 - 22060659
Alignment:
Q  163 gtcatttaagattggtgatcaatggctgaatttagaaagcacaca 207  Q
    |||||||||||||||||||||| || || ||||| ||||||||||    
T  22060615 gtcatttaagattggtgatcaacggttggatttaaaaagcacaca 22060659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 114
Target Start/End: Complemental strand, 29754787 - 29754719
Alignment:
Q  47 cccttaacttattttattttttcattt-ggtcccttaattattaactgtctcaatttggtcccataatt 114  Q
    |||||||||||||||    |||||||| |||||||||| | | ||||||||||||||||| ||||||||    
T  29754787 cccttaacttatttttgaatttcattttggtcccttaactttaaactgtctcaatttggttccataatt 29754719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 149
Target Start/End: Complemental strand, 40926620 - 40926516
Alignment:
Q  47 cccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccat-aattctctatcgtttattattgtggtcctttccg 144  Q
    |||||||||||||||   |||||| ||||||||| ||| ||| || |||||||||||||||| || |||| |||| ||||||   || ||||||| ||||    
T  40926620 cccttaacttatttttggttttcactttggtcccctaactataaagtgtctcaatttggtcctataaattttctaccgtttaccgttttggtcctctccg 40926521  T
Q  145 ttaac 149  Q
    |||||    
T  40926520 ttaac 40926516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 114
Target Start/End: Original strand, 43704623 - 43704691
Alignment:
Q  47 cccttaacttattttattttttcattt-ggtcccttaattattaactgtctcaatttggtcccataatt 114  Q
    |||||||||||||||    |||||||| |||||||||| | | ||| ||||||||||||||||||||||    
T  43704623 cccttaacttatttttgaatttcattttggtcccttaactttaaaccgtctcaatttggtcccataatt 43704691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 184
Target Start/End: Original strand, 48671222 - 48671250
Alignment:
Q  156 tccacttgtcatttaagattggtgatcaa 184  Q
    |||||||||||||||||||||||||||||    
T  48671222 tccacttgtcatttaagattggtgatcaa 48671250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 150 - 231
Target Start/End: Complemental strand, 40059302 - 40059221
Alignment:
Q  150 cccttgtccacttgtcatttaagattggtgatcaatggctgaatttagaaagcacacagatatacaatgaactcacaacata 231  Q
    ||||||| ||| ||||||||||||||| |||||||  |||| ||||||||||| |||| |||||||||||||||||||||||    
T  40059302 cccttgttcacgtgtcatttaagattgatgatcaagagctggatttagaaagcgcacacatatacaatgaactcacaacata 40059221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 31 - 147
Target Start/End: Original strand, 32734125 - 32734248
Alignment:
Q  31 taaggcttaatacatcccc------ttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataattc-tctatcg 122  Q
    |||||||||||||||||||      ||||||||||||||||||||| ||||||||||||| |||| | ||||| ||||||||||||||| || ||| |||    
T  32734125 taaggcttaatacatccccggtcctttaacttattttattttttcagtttggtcccttaactatt-agtgtcttaatttggtcccataactcttctgtcg 32734223  T
Q  123 tttattattgtggtcctttccgtta 147  Q
    |||| |||| ||||| |||||||||    
T  32734224 tttactattttggtcatttccgtta 32734248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 46 - 112
Target Start/End: Complemental strand, 22819651 - 22819584
Alignment:
Q  46 ccccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataa 112  Q
    ||||||||||||||||||||| ||| |||| |||||||| |||||| |||||||||||||||||||||    
T  22819651 ccccttaacttattttattttctcaatttgatcccttaactattaagtgtctcaatttggtcccataa 22819584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 47 - 112
Target Start/End: Original strand, 42510129 - 42510195
Alignment:
Q  47 cccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataa 112  Q
    ||||||| |||||||||||||||| ||||||||||||| ||| || |||||||||||||||||||||    
T  42510129 cccttaatttattttattttttcagtttggtcccttaactataaagtgtctcaatttggtcccataa 42510195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 47 - 148
Target Start/End: Complemental strand, 12831039 - 12830936
Alignment:
Q  47 cccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataattc-tctatcgtttattattgtggtcctttccg 144  Q
    |||||||||||||||||||| ||| |||| |||||||| |||||| |||||||||||||||| |||| || |||   ||||| |||| ||||||| ||||    
T  12831039 cccttaacttattttattttctcagtttgatcccttaactattaagtgtctcaatttggtcctataactcttctgctgtttactattttggtcctctccg 12830940  T
Q  145 ttaa 148  Q
    ||||    
T  12830939 ttaa 12830936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 148
Target Start/End: Complemental strand, 12863017 - 12862916
Alignment:
Q  49 cttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataattc-tctatcgtttattattgtggtcctttccgtt 146  Q
    |||||||||||||||||| ||| |||| |||||||| |||||| |||||||||||||||| |||| || |||   ||||| |||| ||||||| ||||||    
T  12863017 cttaacttattttattttctcagtttgatcccttaactattaagtgtctcaatttggtcctataactcttctgctgtttactattttggtcctctccgtt 12862918  T
Q  147 aa 148  Q
    ||    
T  12862917 aa 12862916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 47 - 137
Target Start/End: Complemental strand, 32735580 - 32735488
Alignment:
Q  47 cccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataattc-tctatcgtttattattgtggtc 137  Q
    |||||||| ||||||||||| ||| |||| ||||||||||||||| ||| | ||||||||||||||| || |||  ||||||||||| |||||    
T  32735580 cccttaacatattttattttctcaatttgatcccttaattattaaatgttttaatttggtcccataactcttctgccgtttattattttggtc 32735488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 224691 - 224625
Alignment:
Q  47 cccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataa 112  Q
    ||||||||||||||||| |||||| ||||||||| ||| ||| || ||||||||||||||| |||||    
T  224691 cccttaacttattttatgttttcattttggtcccctaactataaagtgtctcaatttggtctcataa 224625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 8188301 - 8188235
Alignment:
Q  47 cccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataa 112  Q
    |||||||||||||||||||||||| |||| ||| |||| |||||| ||| |||||||||||| ||||    
T  8188301 cccttaacttattttattttttcagtttgatcctttaactattaagtgtgtcaatttggtcctataa 8188235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 15857719 - 15857653
Alignment:
Q  47 cccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataa 112  Q
    |||||||||||||||||||| ||| ||||||||||||| ||| || ||| |||||||| ||||||||    
T  15857719 cccttaacttattttattttctcagtttggtcccttaactataaagtgtttcaatttgttcccataa 15857653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 24761822 - 24761756
Alignment:
Q  47 cccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataa 112  Q
    |||||||||||||||||||| | | ||| |||||||||||||||| |||||||||||| || |||||    
T  24761822 cccttaacttattttattttcttagtttagtcccttaattattaagtgtctcaatttgatctcataa 24761756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 42511767 - 42511701
Alignment:
Q  47 cccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataa 112  Q
    ||||||| |||||||||||||||| ||||||||||||| ||| || |||||||||||| | ||||||    
T  42511767 cccttaatttattttattttttcagtttggtcccttaactataaagtgtctcaatttgcttccataa 42511701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 11907262 - 11907201
Alignment:
Q  47 cccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcc 107  Q
    |||||||||||||||| ||| ||| ||||||||||||| |||||| ||| ||||||||||||    
T  11907262 cccttaacttattttaatttctcagtttggtcccttaactattaaatgtttcaatttggtcc 11907201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 24071544 - 24071483
Alignment:
Q  47 cccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcc 107  Q
    |||||||||||||||| ||||||| ||| || ||||||||||||| ||| ||||||||||||    
T  24071544 cccttaacttattttaatttttcagtttagttccttaattattaaatgtttcaatttggtcc 24071483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 142 - 231
Target Start/End: Original strand, 26911290 - 26911379
Alignment:
Q  142 ccgttaaccccttgtccacttgtcatttaagattggtgatcaatggctgaatttagaaagcacacagatatacaatgaactcacaacata 231  Q
    |||||||||| || ||||| ||||| |||||||   ||||||| || || ||||||||||| |||| ||||| ||||||||| |||||||    
T  26911290 ccgttaacccattatccacgtgtcacttaagatgaatgatcaagggttggatttagaaagcgcacatatatagaatgaactcgcaacata 26911379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 112
Target Start/End: Complemental strand, 19827239 - 19827175
Alignment:
Q  49 cttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataa 112  Q
    |||||||||||||   |||||| ||||||||| ||||||| || |||||||||||||||||||||    
T  19827239 cttaacttatttttggttttcaatttggtcccataattataaagtgtctcaatttggtcccataa 19827175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 150 - 189
Target Start/End: Original strand, 15613644 - 15613683
Alignment:
Q  150 cccttgtccacttgtcatttaagattggtgatcaatggct 189  Q
    ||||||||||| |||||||||||||| |||||||||||||    
T  15613644 cccttgtccacatgtcatttaagatttgtgatcaatggct 15613683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 104
Target Start/End: Complemental strand, 1273441 - 1273383
Alignment:
Q  47 cccttaacttattttattttttcattt-ggtcccttaattattaactgtctcaatttgg 104  Q
    |||||||||||||||   ||||||||| |||||||||||||| || |||||||||||||    
T  1273441 cccttaacttatttttggttttcattttggtcccttaattataaagtgtctcaatttgg 1273383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 112
Target Start/End: Original strand, 5382957 - 5383023
Alignment:
Q  47 cccttaacttattttattttttc-atttggtcccttaattattaactgtctcaatttggtcccataa 112  Q
    |||||||||||||||   ||||| |||||||| | ||||||| || |||||||||||||||||||||    
T  5382957 cccttaacttatttttggttttctatttggtctcctaattataaagtgtctcaatttggtcccataa 5383023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 108
Target Start/End: Original strand, 12829585 - 12829647
Alignment:
Q  47 cccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtccc 108  Q
    |||||||||||||||||||||||| ||||||||||||| ||  ||  ||||||| ||||||||    
T  12829585 cccttaacttattttattttttcagtttggtcccttaactaagaaacgtctcaaattggtccc 12829647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 231
Target Start/End: Original strand, 20988830 - 20988911
Alignment:
Q  150 cccttgtccacttgtcatttaagattggtgatcaatggctgaatttagaaagcacacagatatacaatgaactcacaacata 231  Q
    |||||||| || | ||||||||||||||||||||| ||||  ||||  |||| |||||  |||||||||  |||||||||||    
T  20988830 cccttgtcaacatatcatttaagattggtgatcaaaggctagatttgaaaagtacacaagtatacaatgggctcacaacata 20988911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 112
Target Start/End: Complemental strand, 37371259 - 37371218
Alignment:
Q  71 tttggtcccttaattattaactgtctcaatttggtcccataa 112  Q
    ||||||||||||| ||| ||| ||||||||||||||||||||    
T  37371259 tttggtcccttaactataaaccgtctcaatttggtcccataa 37371218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 114
Target Start/End: Complemental strand, 6914913 - 6914845
Alignment:
Q  47 cccttaacttattttattttttcattt-ggtcccttaattattaactgtctcaatttggtcccataatt 114  Q
    |||||||||||||||    |||||||| |||||||||| | | ||| ||||||||||||||||||||||    
T  6914913 cccttaacttatttttgaatttcattttggtcccttaactttaaaccgtctcaatttggtcccataatt 6914845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 106
Target Start/End: Original strand, 19523998 - 19524058
Alignment:
Q  47 cccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtc 106  Q
    |||||||||||||||   |||||| ||||||||||||| ||| || |||||||||||||||    
T  19523998 cccttaacttatttttggttttcaatttggtcccttaactataaagtgtctcaatttggtc 19524058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 50 - 183
Target Start/End: Complemental strand, 17258 - 17123
Alignment:
Q  50 ttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataattc-tctatcgtttattattgtggtcctttccgtta 147  Q
    ||||||||||||||||||||| ||||||||||||| |||||| |||||||||||  ||| |||| || ||| || |||| |||| | ||||| ||  |||    
T  17258 ttaacttattttattttttcagtttggtcccttaactattaagtgtctcaatttaatccaataactcttctgtcatttactattttagtcctctctatta 17159  T
Q  148 accccttgtccacttgtcatttaagattggtgatca 183  Q
    ||||| |||| |  ||||||||||||||||||||||    
T  17158 accccatgtctatgtgtcatttaagattggtgatca 17123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 82
Target Start/End: Original strand, 15965 - 16001
Alignment:
Q  47 cccttaacttattttattttttca-tttggtccctta 82  Q
    |||||||||||||||||||||||| ||||||||||||    
T  15965 cccttaacttattttattttttcactttggtccctta 16001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 9e-18; HSPs: 39)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 47 - 112
Target Start/End: Original strand, 6139012 - 6139078
Alignment:
Q  47 cccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataa 112  Q
    |||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||| |||||    
T  6139012 cccttaacttattttattttctcagtttggtcccttaattattaaatgtctcaatttggtctcataa 6139078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 148 - 231
Target Start/End: Complemental strand, 40146611 - 40146528
Alignment:
Q  148 accccttgtccacttgtcatttaagattggtgatcaatggctgaatttagaaagcacacagatatacaatgaactcacaacata 231  Q
    ||||||||||||| ||||||||||| || |||||||| ||||| |||||| |||| |||| |||||||||| || |||||||||    
T  40146611 accccttgtccacatgtcatttaagtttagtgatcaagggctggatttagcaagcgcacaaatatacaatggacgcacaacata 40146528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 47 - 148
Target Start/End: Original strand, 50530518 - 50530621
Alignment:
Q  47 cccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataattc-tctatcgtttattattgtggtcctttccg 144  Q
    |||||||||||||||||||| ||| |||||||| |||| |||||| ||||||||  ||||||||||| || ||||||||||| |||| ||||| |||| |    
T  50530518 cccttaacttattttattttctcagtttggtcctttaactattaagtgtctcaaaatggtcccataactcttctatcgtttactattttggtcatttctg 50530617  T
Q  145 ttaa 148  Q
    ||||    
T  50530618 ttaa 50530621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 50531857 - 50531791
Alignment:
Q  47 cccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataa 112  Q
    |||||||||||||||||||| ||| |||| |||||||| |||||| |||||||||||||||||||||    
T  50531857 cccttaacttattttattttctcaatttgatcccttaactattaagtgtctcaatttggtcccataa 50531791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 141 - 231
Target Start/End: Original strand, 4373508 - 4373598
Alignment:
Q  141 tccgttaaccccttgtccacttgtcatttaagattggtgatcaatggctgaatttagaaagcacaca-gatatacaatgaactcacaacata 231  Q
    |||||||||| ||| ||||| ||||||||| |||||||||| |||||||| ||||  |||||||||| | ||||||||| ||||||||||||    
T  4373508 tccgttaacctctt-tccacgtgtcatttaggattggtgattaatggctggatttgaaaagcacacatggtatacaatggactcacaacata 4373598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 50 - 112
Target Start/End: Original strand, 38417571 - 38417634
Alignment:
Q  50 ttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataa 112  Q
    ||||||||||||||||| ||| ||||||||||||| |||||| ||| |||||||||||||||||    
T  38417571 ttaacttattttattttctcagtttggtcccttaactattaagtgtgtcaatttggtcccataa 38417634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 231
Target Start/End: Complemental strand, 30672041 - 30671960
Alignment:
Q  150 cccttgtccacttgtcatttaagattggtgatcaatggctgaatttagaaagcacacagatatacaatgaactcacaacata 231  Q
    ||||||||||| ||| ||||||||||||||||||| ||||  ||||  |||| ||||| ||||||||||  |||||||||||    
T  30672041 cccttgtccacatgttatttaagattggtgatcaagggctagatttgaaaagtacacaaatatacaatgggctcacaacata 30671960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 49 - 112
Target Start/End: Original strand, 34438423 - 34438487
Alignment:
Q  49 cttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataa 112  Q
    |||||||||||||||||| ||| ||| ||||||||| ||| || |||||||||||||||||||||    
T  34438423 cttaacttattttattttctcagtttagtcccttaactataaagtgtctcaatttggtcccataa 34438487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 207
Target Start/End: Complemental strand, 55953823 - 55953772
Alignment:
Q  156 tccacttgtcatttaagattggtgatcaatggctgaatttagaaagcacaca 207  Q
    ||||| ||||||||||||||||||||||| || |||||||| ||||||||||    
T  55953823 tccacgtgtcatttaagattggtgatcaacggttgaatttaaaaagcacaca 55953772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 231
Target Start/End: Complemental strand, 526692 - 526614
Alignment:
Q  153 ttgtccacttgtcatttaagattggtgatcaatggctgaatttagaaagcacacagatatacaatgaactcacaacata 231  Q
    ||||||||  |||||||||||||||||||||| |||| |||||  |||| |||||  |||||||||  |||||||||||    
T  526692 ttgtccacacgtcatttaagattggtgatcaagggctaaatttgaaaagtacacaagtatacaatgggctcacaacata 526614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 231
Target Start/End: Complemental strand, 29834402 - 29834328
Alignment:
Q  157 ccacttgtcatttaagattggtgatcaatggctgaatttagaaagcacacagatatacaatgaactcacaacata 231  Q
    |||| ||||||||||||||||||||||| ||||  ||||  |||| |||||  ||||||||| ||||||||||||    
T  29834402 ccacatgtcatttaagattggtgatcaagggctatatttgaaaagtacacaagtatacaatggactcacaacata 29834328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 147
Target Start/End: Complemental strand, 33377465 - 33377363
Alignment:
Q  47 cccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataattc-tctatcgtttattattgtggtcctttccg 144  Q
    |||||||||||||||   |||||| ||||||||| ||| ||| || ||||||||||||||||||||| || |||  |||||| |||| ||||||| ||||    
T  33377465 cccttaacttatttttgattttcaatttggtcccctaactataaagtgtctcaatttggtcccataaatcttctgccgtttactattttggtcctctccg 33377366  T
Q  145 tta 147  Q
    |||    
T  33377365 tta 33377363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 34439761 - 34439695
Alignment:
Q  47 cccttaacttattttattttttcatt-tggtcccttaattattaactgtctcaatttggtcccataa 112  Q
    |||||||||||||||||||| ||| | ||||||||||| ||| || ||| |||||||||||||||||    
T  34439761 cccttaacttattttattttctcagtgtggtcccttaactataaaatgtttcaatttggtcccataa 34439695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 108
Target Start/End: Complemental strand, 43419476 - 43419414
Alignment:
Q  47 cccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtccc 108  Q
    |||||||||||||||||||| ||| ||| ||||||||| ||| || |||||||||||||||||    
T  43419476 cccttaacttattttattttctcagtttcgtcccttaactataaagtgtctcaatttggtccc 43419414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 1273533 - 1273468
Alignment:
Q  47 cccttaacttattttattttttcatttggtcccttaattattaactgtctcaatttggtcccataa 112  Q
    |||||||||||||||   |||| |||||||||| ||| ||| || |||||||||||||||||||||    
T  1273533 cccttaacttatttttggttttaatttggtcccctaactataaagtgtctcaatttggtcccataa 1273468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 47 - 103
Target Start/End: Original strand, 5417319 - 5417376
Alignment:
Q  47 cccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttg 103  Q
    |||||||||||||||| ||||||| ||||||||||||| |||||| ||| ||||||||    
T  5417319 cccttaacttattttaatttttcagtttggtcccttaactattaaatgtttcaatttg 5417376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 47 - 107
Target Start/End: Original strand, 11482811 - 11482872
Alignment:
Q  47 cccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcc 107  Q
    |||||||||||||||| ||| ||| ||||||||||||| |||||| ||| ||||||||||||    
T  11482811 cccttaacttattttaatttctcagtttggtcccttaactattaaatgtttcaatttggtcc 11482872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 238
Target Start/End: Complemental strand, 15446643 - 15446555
Alignment:
Q  150 cccttgtccacttgtcatttaagattggtgatcaatggctgaatttagaaagcacacagatatacaatgaactcacaacataggatcat 238  Q
    ||||||||||| ||||||||||||||||||||||| || |  ||||  |||| |||||   ||||||||  ||||||||||| ||||||    
T  15446643 cccttgtccacatgtcatttaagattggtgatcaagggtttgattttaaaagtacacaaccatacaatgggctcacaacatatgatcat 15446555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 148
Target Start/End: Original strand, 15786970 - 15787070
Alignment:
Q  50 ttaacttattttattttttcatttggt-cccttaattattaactgtctcaatttggtcccataa-ttctctatcgtttattattgtggtcctttccgtta 147  Q
    |||||||||||| | ||||||||| || ||| ||| ||| |||||||||||||||||||||||| || |||  ||||||| ||| || |||| |||||||    
T  15786970 ttaacttattttttgttttcattttgttcccctaactataaactgtctcaatttggtcccataacttttctgccgtttatcattatgatcctctccgtta 15787069  T
Q  148 a 148  Q
    |    
T  15787070 a 15787070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 112
Target Start/End: Original strand, 41348230 - 41348320
Alignment:
Q  30 ataaggcttaatacatcccct-------taacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataa 112  Q
    |||||||||||||||||||||       |||||||||||||||| ||| |||| |||||||| |||||| ||| |||||||| ||||||||    
T  41348230 ataaggcttaatacatcccctggtcctttaacttattttattttctcagtttgatcccttaactattaagtgtgtcaatttgatcccataa 41348320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 156 - 207
Target Start/End: Complemental strand, 1273404 - 1273353
Alignment:
Q  156 tccacttgtcatttaagattggtgatcaatggctgaatttagaaagcacaca 207  Q
    ||||| ||||||||||||||||||||||| || || ||||| ||||||||||    
T  1273404 tccacgtgtcatttaagattggtgatcaacggttggatttaaaaagcacaca 1273353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 156 - 207
Target Start/End: Original strand, 26788667 - 26788718
Alignment:
Q  156 tccacttgtcatttaagattggtgatcaatggctgaatttagaaagcacaca 207  Q
    ||||| ||||| ||||||||||||||||| || |||||||| ||||||||||    
T  26788667 tccacgtgtcagttaagattggtgatcaacggttgaatttaaaaagcacaca 26788718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 50 - 147
Target Start/End: Original strand, 44159103 - 44159202
Alignment:
Q  50 ttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataattc-tctatcgtttattattgtggtcctttccgtta 147  Q
    ||||||||||||||||||||| |||| || ||||| |||||| ||| |||||||||| ||| || || |||  ||||||||||| ||||| | |||||||    
T  44159103 ttaacttattttattttttcagtttgatctcttaactattaagtgtttcaatttggttccacaactcttctgccgtttattattttggtcatctccgtta 44159202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 184
Target Start/End: Original strand, 936357 - 936391
Alignment:
Q  150 cccttgtccacttgtcatttaagattggtgatcaa 184  Q
    ||||||||||| |||||||||||||||||||||||    
T  936357 cccttgtccacatgtcatttaagattggtgatcaa 936391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 26202487 - 26202421
Alignment:
Q  47 cccttaacttattttattttttcattt-ggtcccttaattattaactgtctcaatttggtcccataa 112  Q
    |||||||||||||||    |||||||| |||||||||| | | ||||||||||||||||||||||||    
T  26202487 cccttaacttatttttgaatttcattttggtcccttaactttaaactgtctcaatttggtcccataa 26202421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 28103587 - 28103521
Alignment:
Q  47 cccttaacttattttattttttcattt-ggtcccttaattattaactgtctcaatttggtcccataa 112  Q
    |||||||||||||||    |||||||| |||||||||| ||| || |||||||||||||||||||||    
T  28103587 cccttaacttatttttggatttcattttggtcccttaactataaagtgtctcaatttggtcccataa 28103521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 231
Target Start/End: Original strand, 29833518 - 29833592
Alignment:
Q  157 ccacttgtcatttaagattggtgatcaatggctgaatttagaaagcacacagatatacaatgaactcacaacata 231  Q
    |||| ||||| ||||||||||||||||| ||||  ||||  |||| |||||  ||||||||| ||||||||||||    
T  29833518 ccacatgtcaattaagattggtgatcaagggctagatttgaaaagtacacaagtatacaatggactcacaacata 29833592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 30683128 - 30683062
Alignment:
Q  47 cccttaacttattttattttttcattt-ggtcccttaattattaactgtctcaatttggtcccataa 112  Q
    ||||||| |||||||   ||||||||| |||||||||| ||| || |||||||||||||||||||||    
T  30683128 cccttaatttatttttgattttcattttggtcccttaactataaagtgtctcaatttggtcccataa 30683062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 37560400 - 37560334
Alignment:
Q  47 cccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataa 112  Q
    |||||||||||||||   |||||| ||||||||| ||| ||| || |||||||||||||||||||||    
T  37560400 cccttaacttatttttggttttcaatttggtcccctaactataaagtgtctcaatttggtcccataa 37560334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 41349626 - 41349560
Alignment:
Q  47 cccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataa 112  Q
    |||||||||||||||||||| ||| |||| |||||||| | |||| ||| |||||||| ||||||||    
T  41349626 cccttaacttattttattttctcagtttgatcccttaacttttaagtgtgtcaatttgatcccataa 41349560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 147
Target Start/End: Complemental strand, 46796127 - 46796025
Alignment:
Q  47 cccttaacttattttattttttcattt-ggtcccttaattattaactgtctcaatttggtcccataattc-tctatcgtttattattgtggtcctttccg 144  Q
    |||||||||||||||   |||| |||| |||||| ||| ||| || ||||||||||||||||||||| || ||   |||||| |||||||||||| ||||    
T  46796127 cccttaacttatttttggttttaattttggtcccctaactataaagtgtctcaatttggtcccataagtcttcctccgtttactattgtggtcctctccg 46796028  T
Q  145 tta 147  Q
    |||    
T  46796027 tta 46796025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 238
Target Start/End: Complemental strand, 47606570 - 47606488
Alignment:
Q  157 ccacttgtcatttaagattggtgatcaatggctgaatttagaaagcacac-agatatacaatgaactcacaacataggatcat 238  Q
    |||| ||||| ||| ||||||||||||| || || ||||| ||||||||| | || |||||| ||||||||||||| ||||||    
T  47606570 ccacgtgtcacttaggattggtgatcaagggttggatttaaaaagcacacaaaatttacaataaactcacaacatatgatcat 47606488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 112
Target Start/End: Complemental strand, 15787602 - 15787537
Alignment:
Q  48 ccttaacttattttattttttcattt-ggtcccttaattattaactgtctcaatttggtcccataa 112  Q
    |||||| ||||||| | ||||||||| |||||| ||| ||| || |||||||||||||||||||||    
T  15787602 ccttaatttattttttgttttcattttggtcccctaactataaagtgtctcaatttggtcccataa 15787537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 148
Target Start/End: Original strand, 33376235 - 33376336
Alignment:
Q  49 cttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataattc-tctatcgtttattattgtggtcctttccgtt 146  Q
    |||||||||||||   |||||| ||| || || ||||||| || ||||||||||||||||||||| || ||| ||||||| |||| | ||||| ||||||    
T  33376235 cttaacttatttttggttttcaatttagtgccctaattataaagtgtctcaatttggtcccataaatcttctgtcgtttactattttagtcctctccgtt 33376334  T
Q  147 aa 148  Q
    ||    
T  33376335 aa 33376336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 112
Target Start/End: Original strand, 37559014 - 37559079
Alignment:
Q  48 ccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataa 112  Q
    ||||||||||||||   |||||| ||||||||| ||| ||| || |||||||||||||||||||||    
T  37559014 ccttaacttatttttggttttcaatttggtcccctaactataaaatgtctcaatttggtcccataa 37559079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 231
Target Start/End: Original strand, 48206295 - 48206380
Alignment:
Q  146 taaccccttgtccacttgtcatttaagattggtgatcaatggctgaatttagaaagcacacagatatacaatgaactcacaacata 231  Q
    |||||| || ||||| ||||| ||||||| | |||||||  | |  ||||||||||| |||| |||||||||||| ||||||||||    
T  48206295 taacccattatccacatgtcacttaagatggatgatcaagagttagatttagaaagcgcacatatatacaatgaattcacaacata 48206380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 112
Target Start/End: Original strand, 5687216 - 5687256
Alignment:
Q  72 ttggtcccttaattattaactgtctcaatttggtcccataa 112  Q
    |||||||||||| ||| || |||||||||||||||||||||    
T  5687216 ttggtcccttaactataaagtgtctcaatttggtcccataa 5687256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 146
Target Start/End: Complemental strand, 21104410 - 21104310
Alignment:
Q  48 ccttaacttattttattttttcattt-ggtcccttaattattaactgtctcaatttggtcccataattc-tctatcgtttattattgtggtcctttccgt 145  Q
    |||||| ||||||| | ||||||||| |||||| ||| ||| || ||||||||||||||| ||||  || ||| |||||||  ||| |||||||||||||    
T  21104410 ccttaaattattttttgttttcattttggtcccctaactataaagtgtctcaatttggtctcatatgtcttctgtcgtttaccattttggtcctttccgt 21104311  T
Q  146 t 146  Q
    |    
T  21104310 t 21104310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 112
Target Start/End: Complemental strand, 38419116 - 38419052
Alignment:
Q  49 cttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataa 112  Q
    |||||||||||||||||| ||| |||  | ||||||||||||| ||| ||||||||||| |||||    
T  38419116 cttaacttattttattttctcagtttaattccttaattattaagtgtgtcaatttggtctcataa 38419052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 47 - 147
Target Start/End: Complemental strand, 2366 - 2264
Alignment:
Q  47 cccttaacttattttattttttcattt-ggtcccttaattattaactgtctcaatttggtcccataattc-tctatcgtttattattgtggtcctttccg 144  Q
    |||||||||||||||   ||||||||| |||||| ||||||| || ||| ||||||||||||||||| || ||||  ||||| |||| ||||||||||||    
T  2366 cccttaacttatttttggttttcattttggtcccctaattataaagtgtttcaatttggtcccataactcttctactgtttactattttggtcctttccg 2267  T
Q  145 tta 147  Q
    |||    
T  2266 tta 2264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 231
Target Start/End: Complemental strand, 2246 - 2160
Alignment:
Q  145 ttaaccccttgtccacttgtcatttaagattggtgatcaatggctgaatttagaaagcacacagatatacaatgaactcacaacata 231  Q
    ||||||| || ||||| ||||| ||||||| | ||||||| || || ||||||| ||| |||| |||||||||||||||| ||||||    
T  2246 ttaacccattatccacgtgtcacttaagatggatgatcaagggttggatttagagagcgcacatatatacaatgaactcaaaacata 2160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 4319 - 4253
Alignment:
Q  47 cccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataa 112  Q
    |||||||||||||||||||| | | ||| |||||||||||||||| |||||||||||| || |||||    
T  4319 cccttaacttattttattttcttagtttagtcccttaattattaagtgtctcaatttgatctcataa 4253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 139
Target Start/End: Complemental strand, 42447 - 42353
Alignment:
Q  47 cccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataattc-tctatcgtttattattgtggtcct 139  Q
    |||||||||||||||||||| ||| |||| |||||||| |||||  ||| |||||||| |||||||| || ||| ||||||| |||| |||||||    
T  42447 cccttaacttattttattttctcagtttgatcccttaactattacgtgtatcaatttgatcccataaatcttctgtcgtttactattttggtcct 42353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 205653 - 205592
Alignment:
Q  47 cccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcc 107  Q
    |||||||||||||||| ||| ||| ||||||||||||||||||||  || ||||||||||||    
T  205653 cccttaacttattttaatttctcagtttggtcccttaattattaaacgtttcaatttggtcc 205592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 106
Target Start/End: Original strand, 204551 - 204613
Alignment:
Q  47 cccttaacttattttattttttcatttggtccctta---attattaactgtctcaatttggtc 106  Q
    |||||||||||||||| ||| ||| |||||||||||   |||||||| ||| |||||||||||    
T  204551 cccttaacttattttaatttctcagttggtcccttaactattattaaatgtttcaatttggtc 204613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 112
Target Start/End: Original strand, 23421 - 23487
Alignment:
Q  47 cccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataa 112  Q
    |||||||||||||||   |||||| ||||||||| ||| ||| || |||||||||||||||||||||    
T  23421 cccttaacttatttttggttttcagtttggtcccctaactataaaatgtctcaatttggtcccataa 23487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 56801 - 56735
Alignment:
Q  47 cccttaacttattttattttttca-tttggtcccttaattattaactgtctcaatttggtcccataa 112  Q
    ||||||||||||||| |  ||||| ||||||||| ||||||| || |||||||||||||||| ||||    
T  56801 cccttaacttattttttgatttcactttggtcccctaattataaagtgtctcaatttggtcctataa 56735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 112
Target Start/End: Original strand, 54631 - 54672
Alignment:
Q  71 tttggtcccttaattattaactgtctcaatttggtcccataa 112  Q
    |||||||| |||||||| || |||||||||||||||||||||    
T  54631 tttggtcctttaattataaagtgtctcaatttggtcccataa 54672  T

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Target: scaffold0002 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 189
Target Start/End: Complemental strand, 458436 - 458398
Alignment:
Q  151 ccttgtccacttgtcatttaagattggtgatcaatggct 189  Q
    |||||||||| ||||||||||||||||||||||| ||||    
T  458436 ccttgtccacatgtcatttaagattggtgatcaagggct 458398  T

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Target: scaffold0177 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0177
Description:

Target: scaffold0177; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 231
Target Start/End: Original strand, 1894 - 1975
Alignment:
Q  150 cccttgtccacttgtcatttaagattggtgatcaatggctgaatttagaaagcacacagatatacaatgaactcacaacata 231  Q
    |||||| |||| |||||||||||||||  |||||| ||||  ||||  |||| |||||  |||||||||| |||||||||||    
T  1894 cccttgcccacatgtcatttaagattgaagatcaagggctagatttgaaaagtacacaagtatacaatgagctcacaacata 1975  T

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Target: scaffold0041 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 85177 - 85116
Alignment:
Q  47 cccttaacttattttattttttcatt-tggtcccttaattattaactgtctcaatttggtcc 107  Q
    |||||||||||||||| ||| ||| | ||||||||||| ||||||| || ||||||||||||    
T  85177 cccttaacttattttaatttctcagtgtggtcccttaactattaaccgtttcaatttggtcc 85116  T

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