View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21152_high_2 (Length: 434)
Name: NF21152_high_2
Description: NF21152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21152_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 126; Significance: 8e-65; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 113 - 267
Target Start/End: Original strand, 35653117 - 35653271
Alignment:
| Q |
113 |
gaaaacataattatggatctagctagaaatctatctctaaatagatgatattgtattatttaaatttctcaattacatgatttaggccttnnnnnnnggg |
212 |
Q |
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| T |
35653117 |
gaaaacataaatatggatctagctagaaatctatctctagatagatgatattgtattatttaaatttctcaattacatgatttaggccttaaaaaaaggg |
35653216 |
T |
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| Q |
213 |
tgccctatgaggtattccctttcttcttgaatttggcttttggataggaagcatg |
267 |
Q |
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| T |
35653217 |
tgccctatgaggtattccctttcttcttgaatttggcttttggataggaagcatg |
35653271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 16 - 116
Target Start/End: Original strand, 35652986 - 35653086
Alignment:
| Q |
16 |
atggattcacaataacttctttcgctacatgcagcattacctaatagaaaacttggcatgtttcaaatattaatttaatgaatctaacaaaggaaacgaa |
115 |
Q |
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| T |
35652986 |
atggattcacaataacttctttcgctacatgcagcattacctaatagaaaacttggcatgtttcaaatattaatttaatgaatctaacaaaggaaacgaa |
35653085 |
T |
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| Q |
116 |
a |
116 |
Q |
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| T |
35653086 |
a |
35653086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 386 - 431
Target Start/End: Original strand, 35653390 - 35653435
Alignment:
| Q |
386 |
gtgccttgatcgattcctccaacaatctttccatttcttctctctc |
431 |
Q |
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| T |
35653390 |
gtgccttgatcgattcctccaacaatctttccatttcttctgtctc |
35653435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 251
Target Start/End: Original strand, 35676866 - 35676906
Alignment:
| Q |
211 |
ggtgccctatgaggtattccctttcttcttgaatttggctt |
251 |
Q |
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| T |
35676866 |
ggtgccctatgagctattccctttctttttgaatttggctt |
35676906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 251
Target Start/End: Original strand, 35682901 - 35682941
Alignment:
| Q |
211 |
ggtgccctatgaggtattccctttcttcttgaatttggctt |
251 |
Q |
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| T |
35682901 |
ggtgccctatgagctattccctttctttttgaatttggctt |
35682941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 128 - 247
Target Start/End: Original strand, 35667937 - 35668053
Alignment:
| Q |
128 |
gatctagctagaaatctatctctaaatagatgatattgtattatttaaatttctcaattacatgatttagg-ccttnnnnnnngggtgccctatgaggta |
226 |
Q |
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| T |
35667937 |
gatctagctagaaatctatctcca----gacgatagtgtattatttaaatctctctaatccttgatttagggccttaaaagaaaggtgcccgttgaggta |
35668032 |
T |
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| Q |
227 |
ttccctttcttcttgaatttg |
247 |
Q |
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| T |
35668033 |
ttccctttcttcttgaatttg |
35668053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 431
Target Start/End: Complemental strand, 35099194 - 35099149
Alignment:
| Q |
386 |
gtgccttgatcgattcctccaacaatctttccatttcttctctctc |
431 |
Q |
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| T |
35099194 |
gtgccttgatcgattcttccagtaatctttccatttcttctgtctc |
35099149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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