View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21152_low_1 (Length: 494)

Name: NF21152_low_1
Description: NF21152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21152_low_1
NF21152_low_1
[»] chr7 (4 HSPs)
chr7 (18-493)||(29685421-29685900)
chr7 (181-416)||(29680145-29680376)
chr7 (354-458)||(29668370-29668482)
chr7 (77-123)||(46170690-46170736)
[»] chr4 (9 HSPs)
chr4 (36-157)||(29538075-29538196)
chr4 (105-157)||(33817860-33817912)
chr4 (100-157)||(40882685-40882741)
chr4 (88-133)||(40991356-40991401)
chr4 (95-133)||(10308729-10308767)
chr4 (98-147)||(16557831-16557880)
chr4 (80-125)||(38519339-38519384)
chr4 (35-88)||(52163317-52163370)
chr4 (83-123)||(17340088-17340128)
[»] chr1 (5 HSPs)
chr1 (34-154)||(18315421-18315541)
chr1 (84-136)||(25525935-25525987)
chr1 (80-126)||(44410764-44410810)
chr1 (77-125)||(3794194-3794242)
chr1 (97-133)||(24144675-24144711)
[»] chr3 (6 HSPs)
chr3 (36-145)||(46210481-46210590)
chr3 (73-131)||(51386785-51386843)
chr3 (103-156)||(9759370-9759423)
chr3 (88-125)||(6101926-6101963)
chr3 (77-125)||(15100653-15100701)
chr3 (77-125)||(42217167-42217215)
[»] chr8 (5 HSPs)
chr8 (87-157)||(42642551-42642621)
chr8 (80-157)||(6268556-6268632)
chr8 (95-128)||(26404429-26404462)
chr8 (103-153)||(6269683-6269733)
chr8 (80-125)||(4455361-4455406)
[»] chr2 (4 HSPs)
chr2 (28-132)||(41266810-41266913)
chr2 (88-157)||(5193977-5194048)
chr2 (77-123)||(37484452-37484498)
chr2 (80-125)||(16106721-16106766)
[»] chr6 (1 HSPs)
chr6 (77-126)||(6817339-6817388)
[»] scaffold0242 (1 HSPs)
scaffold0242 (77-125)||(17858-17906)


Alignment Details
Target: chr7 (Bit Score: 342; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 18 - 493
Target Start/End: Original strand, 29685421 - 29685900
Alignment:
Q  18 aagagcaactaatagaatcaatgttttaaaacccggacaggtgatcgatccgattaaggcattgggttactggtcgaaccaatgagtcactggtcggacc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||||||    
T  29685421 aagagcaactaatagaatcaatgttttaaaacccggacaggtgatcgatccgattaaggcactgggttactggtcgaatcaatgggtcactggtcggacc 29685520  T
Q  118 gcatgactattgacccggtttatataaaaatatttatgactaagctcttcttctactggtttctctcacttcactactcttcagtctccactgatcagcc 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||    
T  29685521 gcatgactattgacccggtttatataaaaatatttatgactaagctcttcttctactgatttctctcacttcactactctccggtctccactgatcagcc 29685620  T
Q  218 tcttcactccaattgcaaaat-----nnnnnnnnnttaacagcaaaattcatttattgattatggttaaaaaactaaaactatgagannnnnnngggtac 312  Q
    |||||||||||||||||||||              ||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||    
T  29685621 tcttcactccaattgcaaaataaaaaaaaaaaaaattaacagcaaaattcatttattgattatggttaaaaaactaaaactatgagatttttttgggtac 29685720  T
Q  313 aaattgtgatttcttaatctgtgtggnnnnnnnnnnctaacactaattagggtatgtgttcacactaggtagtagtgagataacacaatcctttcctttc 412  Q
    ||||||||||||||||||||||||||          |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  29685721 aaattgtgatttcttaatctgtgtgg-aaaaaaaaactaacactaattagggtatgtgttcacaataggtagtagtgagataacacaatcctttcctttc 29685819  T
Q  413 ctttgactacgccaatatacctttgtcttactatttacgaaccaacaaccaggtaaccgtcactactctctgctcctcctc 493  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  29685820 ctttgactacgccaatatacctttgtcttactatttacgaaccaacaaccaggtaaccgtcactactctttgctcatcctc 29685900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 181 - 416
Target Start/End: Original strand, 29680145 - 29680376
Alignment:
Q  181 tctcacttcactactcttcagtctccactgatcagcctcttcactccaattgcaaaatnnnnnnnnnttaacagcaaaattcatttattgattatggtta 280  Q
    ||||||||||||||||| |||||||||||   ||| ||||||||||||| ||||||||         |||||| ||||||||||||||||||||||||||    
T  29680145 tctcacttcactactctccagtctccact---cagtctcttcactccaaatgcaaaataaaaaaat-ttaacatcaaaattcatttattgattatggtta 29680240  T
Q  281 aaaaa-ctaaaactatgagannnnnnngggtacaaattgtgatttcttaatctgtgtggnnnnnnnnnn--ctaacactaattagggtatgtgttcacac 377  Q
    ||||| |||||| |||||||       |||||||||||||||||||||||||||||||             ||||||   ||||||||||||||||||||    
T  29680241 aaaaaactaaaattatgagattttgttgggtacaaattgtgatttcttaatctgtgtgtgacaaaaaaaaactaaca---attagggtatgtgttcacac 29680337  T
Q  378 taggtagtagtgagataacacaatcctttcctttccttt 416  Q
    |||||||||||||||||||||||||||||||||||||||    
T  29680338 taggtagtagtgagataacacaatcctttcctttccttt 29680376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 354 - 458
Target Start/End: Original strand, 29668370 - 29668482
Alignment:
Q  354 actaattagggtatgtgttcacactaggtagtagtg--------agataacacaatcctttcctttcctttgactacgccaatatacctttgtcttacta 445  Q
    ||||||||||| ||||||||||||||| |||||||         ||||||||| ||||||||||||||||||||||  |||||||||||||||||| |||    
T  29668370 actaattagggcatgtgttcacactagatagtagtagggagataagataacacgatcctttcctttcctttgactataccaatatacctttgtcttccta 29668469  T
Q  446 tttacgaaccaac 458  Q
    |||||| ||||||    
T  29668470 tttacggaccaac 29668482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 123
Target Start/End: Original strand, 46170690 - 46170736
Alignment:
Q  77 cattgggttactggtcgaaccaatgagtcactggtcggaccgcatga 123  Q
    |||||||||| ||||||||||| ||||||| |||||| |||||||||    
T  46170690 cattgggttaatggtcgaaccactgagtcaatggtcgaaccgcatga 46170736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 6e-29; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 36 - 157
Target Start/End: Original strand, 29538075 - 29538196
Alignment:
Q  36 caatgttttaaaacccggacaggtgatcgatccgattaaggcattgggttactggtcgaaccaatgagtcactggtcggaccgcatgactattgacccgg 135  Q
    |||||||||||||||||||| ||||||||| ||||| |||||| ||||| ||| ||||||||| || ||||||| || ||| ||||||||||||| ||||    
T  29538075 caatgttttaaaacccggaccggtgatcgacccgatcaaggcactgggtcactagtcgaaccagtgggtcactgatccgactgcatgactattgatccgg 29538174  T
Q  136 tttatataaaaatatttatgac 157  Q
    | ||||| ||||||||||||||    
T  29538175 tctatatcaaaatatttatgac 29538196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 105 - 157
Target Start/End: Complemental strand, 33817912 - 33817860
Alignment:
Q  105 cactggtcggaccgcatgactattgacccggtttatataaaaatatttatgac 157  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  33817912 cactggtcggaccgcatgactattaacccggtctatataaaaatatttatgac 33817860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 100 - 157
Target Start/End: Complemental strand, 40882741 - 40882685
Alignment:
Q  100 tgagtcactggtcggaccgcatgactattgacccggtttatataaaaatatttatgac 157  Q
    |||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||    
T  40882741 tgagtcactgatcggaccgcatgactattgaccc-gtatatataaaaatatttatgac 40882685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 88 - 133
Target Start/End: Complemental strand, 40991401 - 40991356
Alignment:
Q  88 tggtcgaaccaatgagtcactggtcggaccgcatgactattgaccc 133  Q
    |||||| ||||||| |||||||||||||||||||||||||||||||    
T  40991401 tggtcggaccaatgggtcactggtcggaccgcatgactattgaccc 40991356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 95 - 133
Target Start/End: Complemental strand, 10308767 - 10308729
Alignment:
Q  95 accaatgagtcactggtcggaccgcatgactattgaccc 133  Q
    |||||||  ||||||||||||||||||||||||||||||    
T  10308767 accaatggatcactggtcggaccgcatgactattgaccc 10308729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 147
Target Start/End: Complemental strand, 16557880 - 16557831
Alignment:
Q  98 aatgagtcactggtcggaccgcatgactattgacccggtttatataaaaa 147  Q
    ||||||||||||||||||||||||| |||||||  | |||| ||||||||    
T  16557880 aatgagtcactggtcggaccgcatgtctattgattcagtttttataaaaa 16557831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 125
Target Start/End: Original strand, 38519339 - 38519384
Alignment:
Q  80 tgggttactggtcgaaccaatgagtcactggtcggaccgcatgact 125  Q
    ||||||| ||||||||||| |||||||||||| | |||||||||||    
T  38519339 tgggttaatggtcgaaccattgagtcactggttgaaccgcatgact 38519384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 88
Target Start/End: Complemental strand, 52163370 - 52163317
Alignment:
Q  35 tcaatgttttaaaacccggacaggtgatcgatccgattaaggcattgggttact 88  Q
    ||||||||||||||||||||| |||||||||  || | |||||| |||||||||    
T  52163370 tcaatgttttaaaacccggaccggtgatcgacacggtcaaggcactgggttact 52163317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 83 - 123
Target Start/End: Original strand, 17340088 - 17340128
Alignment:
Q  83 gttactggtcgaaccaatgagtcactggtcggaccgcatga 123  Q
    ||||||| ||| ||||||||||||||||||| |||||||||    
T  17340088 gttactgatcggaccaatgagtcactggtcgaaccgcatga 17340128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 34 - 154
Target Start/End: Complemental strand, 18315541 - 18315421
Alignment:
Q  34 atcaatgttttaaaacccggacaggtgatcgatccgattaaggcattgggttactggtcgaaccaatgagtcactggtcggaccgcatgactattgaccc 133  Q
    |||||||||||||||||||||| ||||||||||||| | |||||| ||||  || |||||||||  || |||||  |||| ||||||||||||||||||     
T  18315541 atcaatgttttaaaacccggaccggtgatcgatccggtcaaggcactggggcaccggtcgaaccggtgggtcaccagtcgtaccgcatgactattgacct 18315442  T
Q  134 ggtttatataaaaatatttat 154  Q
    | | |||||||||||||||||    
T  18315441 gatctatataaaaatatttat 18315421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 84 - 136
Target Start/End: Complemental strand, 25525987 - 25525935
Alignment:
Q  84 ttactggtcgaaccaatgagtcactggtcggaccgcatgactattgacccggt 136  Q
    |||||||||||| || || ||| ||||||||| ||||||||||||||||||||    
T  25525987 ttactggtcgaatcagtgggtccctggtcggatcgcatgactattgacccggt 25525935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 126
Target Start/End: Original strand, 44410764 - 44410810
Alignment:
Q  80 tgggttactggtcgaaccaatgagtcactggtcggaccgcatgacta 126  Q
    ||||||| ||||||||||| |||||||||||| | ||||||||||||    
T  44410764 tgggttaatggtcgaaccactgagtcactggttgaaccgcatgacta 44410810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 77 - 125
Target Start/End: Original strand, 3794194 - 3794242
Alignment:
Q  77 cattgggttactggtcgaaccaatgagtcactggtcggaccgcatgact 125  Q
    |||||||||| ||||||||||| ||||||| |||| | |||||||||||    
T  3794194 cattgggttaatggtcgaaccactgagtcattggttgaaccgcatgact 3794242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 97 - 133
Target Start/End: Original strand, 24144675 - 24144711
Alignment:
Q  97 caatgagtcactggtcggaccgcatgactattgaccc 133  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  24144675 caatgggtcactggtcagaccgcatgactattgaccc 24144711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 8e-22; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 36 - 145
Target Start/End: Complemental strand, 46210590 - 46210481
Alignment:
Q  36 caatgttttaaaacccggacaggtgatcgatccgattaaggcattgggttactggtcgaaccaatgagtcactggtcggaccgcatgactattgacccgg 135  Q
    |||||||||||||||||||| ||||||||| ||| | |||||| ||| | |||| ||||| || || ||||||||||||| |||||||||||||| ||||    
T  46210590 caatgttttaaaacccggaccggtgatcgacccggtcaaggcactggatcactgatcgaatcagtgggtcactggtcggatcgcatgactattgatccgg 46210491  T
Q  136 tttatataaa 145  Q
    | ||||||||    
T  46210490 tctatataaa 46210481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 73 - 131
Target Start/End: Complemental strand, 51386843 - 51386785
Alignment:
Q  73 aaggcattgggttactggtcgaaccaatgagtcactggtcggaccgcatgactattgac 131  Q
    |||||| ||||| | |||||||||||||| ||||||| |||||||||||||||||||||    
T  51386843 aaggcactgggtcagtggtcgaaccaatgtgtcactgatcggaccgcatgactattgac 51386785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 103 - 156
Target Start/End: Complemental strand, 9759423 - 9759370
Alignment:
Q  103 gtcactggtcggaccgcatgactattgacccggtttatataaaaatatttatga 156  Q
    |||| |||||||| | |||||||||||| ||||| |||||||||||||||||||    
T  9759423 gtcattggtcggatcacatgactattgatccggtctatataaaaatatttatga 9759370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 125
Target Start/End: Complemental strand, 6101963 - 6101926
Alignment:
Q  88 tggtcgaaccaatgagtcactggtcggaccgcatgact 125  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  6101963 tggtcgaaccattgagtcactggtcgaaccgcatgact 6101926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 77 - 125
Target Start/End: Original strand, 15100653 - 15100701
Alignment:
Q  77 cattgggttactggtcgaaccaatgagtcactggtcggaccgcatgact 125  Q
    |||||||||| ||||||||||| |||||||||| | | |||||||||||    
T  15100653 cattgggttaatggtcgaaccactgagtcactgattgaaccgcatgact 15100701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 77 - 125
Target Start/End: Complemental strand, 42217215 - 42217167
Alignment:
Q  77 cattgggttactggtcgaaccaatgagtcactggtcggaccgcatgact 125  Q
    ||||| |||| ||||||||||| |||||||||||| | |||||||||||    
T  42217215 cattgagttaatggtcgaaccactgagtcactggttgaaccgcatgact 42217167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 87 - 157
Target Start/End: Complemental strand, 42642621 - 42642551
Alignment:
Q  87 ctggtcgaaccaatgagtcactggtcggaccgcatgactattgacccggtttatataaaaatatttatgac 157  Q
    |||||||||||| ||  ||||||||||||||||||||||||||| || || ||||||||||||||||||||    
T  42642621 ctggtcgaaccagtggttcactggtcggaccgcatgactattgatccagtctatataaaaatatttatgac 42642551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 80 - 157
Target Start/End: Complemental strand, 6268632 - 6268556
Alignment:
Q  80 tgggttactggtcgaaccaatgagtcactggtcggaccgcatgactattgacccggtttatataaaaatatttatgac 157  Q
    ||||||||||||| ||||| || |||||||||  |||||| |||||||||||||| | ||||| ||||||||||||||    
T  6268632 tgggttactggtcaaaccagtgggtcactggttagaccgcttgactattgacccgatctatat-aaaatatttatgac 6268556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 95 - 128
Target Start/End: Original strand, 26404429 - 26404462
Alignment:
Q  95 accaatgagtcactggtcggaccgcatgactatt 128  Q
    ||||||||||||||||||||||||||||||||||    
T  26404429 accaatgagtcactggtcggaccgcatgactatt 26404462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 103 - 153
Target Start/End: Original strand, 6269683 - 6269733
Alignment:
Q  103 gtcactggtcggaccgcatgactattgacccggtttatataaaaatattta 153  Q
    |||||||||| ||||||||||||| ||| ||| | ||||||||||||||||    
T  6269683 gtcactggtcagaccgcatgactactgatccgatctatataaaaatattta 6269733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 125
Target Start/End: Complemental strand, 4455406 - 4455361
Alignment:
Q  80 tgggttactggtcgaaccaatgagtcactggtcggaccgcatgact 125  Q
    ||||| ||||||||||||| ||||||| |||||| |||||||||||    
T  4455406 tgggtcactggtcgaaccactgagtcattggtcgaaccgcatgact 4455361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 28 - 132
Target Start/End: Complemental strand, 41266913 - 41266810
Alignment:
Q  28 aatagaatcaatgttttaaaacccggacaggtgatcgatccgattaaggcattgggttactggtcgaaccaatgagtcactggtcggaccgcatgactat 127  Q
    |||| ||||||||||||||||||||||| |||  |||| ||| | |||||||||||| | |||||| | | ||| | |||||||||||||||||||||||    
T  41266913 aataaaatcaatgttttaaaacccggaccggtagtcgacccggtcaaggcattgggtcagtggtcggatc-atgggccactggtcggaccgcatgactat 41266815  T
Q  128 tgacc 132  Q
    |||||    
T  41266814 tgacc 41266810  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 88 - 157
Target Start/End: Complemental strand, 5194048 - 5193977
Alignment:
Q  88 tggtcgaaccaatgagtcactggtcggaccgcatgactattgacccggtttatat--aaaaatatttatgac 157  Q
    |||||||||||||| |||| |||||  ||||||||| |||||||||||| |||||  |||||||||||||||    
T  5194048 tggtcgaaccaatgggtcattggtcaaaccgcatgattattgacccggtctatataaaaaaatatttatgac 5193977  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 123
Target Start/End: Original strand, 37484452 - 37484498
Alignment:
Q  77 cattgggttactggtcgaaccaatgagtcactggtcggaccgcatga 123  Q
    |||||||||| || |||||||| |||||||||||||| |||||||||    
T  37484452 cattgggttattgatcgaaccattgagtcactggtcgaaccgcatga 37484498  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 125
Target Start/End: Complemental strand, 16106766 - 16106721
Alignment:
Q  80 tgggttactggtcgaaccaatgagtcactggtcggaccgcatgact 125  Q
    ||||||| ||||||||||| |||||||||||| | |||||||||||    
T  16106766 tgggttaatggtcgaaccactgagtcactggttgaaccgcatgact 16106721  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 126
Target Start/End: Original strand, 6817339 - 6817388
Alignment:
Q  77 cattgggttactggtcgaaccaatgagtcactggtcggaccgcatgacta 126  Q
    |||||||||| ||||||||||| |||||||||||| | ||||||| ||||    
T  6817339 cattgggttaatggtcgaaccactgagtcactggttgaaccgcataacta 6817388  T

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Target: scaffold0242 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0242
Description:

Target: scaffold0242; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 77 - 125
Target Start/End: Complemental strand, 17906 - 17858
Alignment:
Q  77 cattgggttactggtcgaaccaatgagtcactggtcggaccgcatgact 125  Q
    |||||||||| ||||||||||| ||||||| |||| | |||||||||||    
T  17906 cattgggttaatggtcgaaccattgagtcattggttgaaccgcatgact 17858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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