View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21153_high_2 (Length: 353)
Name: NF21153_high_2
Description: NF21153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21153_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 14 - 324
Target Start/End: Original strand, 24577268 - 24577577
Alignment:
| Q |
14 |
taggcagtgcccaccttctttcctttcatgctttataaaagtttgacccctccactccattccacatgcttcacctctcttaactcctcttctttcattc |
113 |
Q |
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| T |
24577268 |
taggctgtgcccaccttctttcctttcatgctttataaaagtttgacccctccactccattccacatgcttcacctctct-aactcctcttctttcattc |
24577366 |
T |
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| Q |
114 |
ttcttttacatatgaaataaaataaaatatagtctccggaatctcaatcccccttctcctaccatatatatttatatttcccttcaaagaagaaacttac |
213 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24577367 |
ttcttttacatatgaaataaaataaaatataatctccggaatctcaatcccccttctcctaccatatatatttatatttcccttcaaagaagaaacttac |
24577466 |
T |
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| Q |
214 |
agagtctctctttccctttaattatttctttattagtattctcacaattccacaagcacagttcttgcaaaatgcaaatgcactaacattaaactttgca |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
24577467 |
agagtctctctttccctttaattatttctttattagtattctcacaattccacaagcacaatccttgcaaaatgcaaatgcactaacattaaactttgca |
24577566 |
T |
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| Q |
314 |
gcagaggaagg |
324 |
Q |
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||||||||||| |
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| T |
24577567 |
gcagaggaagg |
24577577 |
T |
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