View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21153_high_3 (Length: 344)
Name: NF21153_high_3
Description: NF21153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21153_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 162 - 324
Target Start/End: Original strand, 25463235 - 25463397
Alignment:
| Q |
162 |
gtttctctgtcctcacagagacgaaatcatatatcggttctccatatgcaggatcatcacatatacatgtgtaattaacacacttcgtaatcagaggagg |
261 |
Q |
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| T |
25463235 |
gtttctctgtcctcacagagacgaaatcatatatcggttctccatatgcaggatcatcacatatacatgtgtaattaacacacttcgtaatcagaggagg |
25463334 |
T |
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| Q |
262 |
tacacagaaattttctggacattcagtgacttttcgacatacataaagtgctgtaattaaaaa |
324 |
Q |
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| T |
25463335 |
tacacagaaattttctggacattcagcgacttttcgacatacataaagtgctgtaattaaaaa |
25463397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 32 - 76
Target Start/End: Original strand, 25463106 - 25463150
Alignment:
| Q |
32 |
attttatactaatgaaataaatcattcttccttcaatgacatatt |
76 |
Q |
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| T |
25463106 |
attttatactaatgaaataaatcattcttccttcaatgacatatt |
25463150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 187 - 319
Target Start/End: Original strand, 24108154 - 24108286
Alignment:
| Q |
187 |
atcatatatcggttctccatatgcaggatcatcacatatacatgtgtaattaacacacttcgtaatcagaggaggtacacagaaattttctggacattca |
286 |
Q |
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| T |
24108154 |
atcatattccggttcaccatatggaggatcatcacatatacatgtgtaattaatacactggatagtcaaaggaggcacacaaaagttttctggacaatca |
24108253 |
T |
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| Q |
287 |
gtgacttttcgacatacataaagtgctgtaatt |
319 |
Q |
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| T |
24108254 |
gatacactacgacatacataaagtgctgaaatt |
24108286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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