View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21154_high_1 (Length: 703)

Name: NF21154_high_1
Description: NF21154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21154_high_1
NF21154_high_1
[»] chr8 (1 HSPs)
chr8 (19-654)||(2063701-2064333)


Alignment Details
Target: chr8 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 19 - 654
Target Start/End: Complemental strand, 2064333 - 2063701
Alignment:
Q  19 ggaagtggacattggttgaaggattacgtggacagactatcggcttcgatttcatcgcgaacggcgtcgtttcggagttctggaagattcttcgccggag 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2064333 ggaagtggacattggttgaaggattacgtggacagactatcggcttcgatttcatcgcgaacggcgtcgtttcggagttctggaagattcttcgccggag 2064234  T
Q  119 gtggaagtagtcgcagaattgaaccggttgattatgacgttgaaggtaacagaattggtgaagaaattagtgaaatgtttcggtggctttcaggggtatg 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  2064233 gtggaagtagtcgcagaattgaaccggttgattatgacgttgaaggtaacagaattggtgaagagattagtgaaatgtttcggtggctttcaggggtatg 2064134  T
Q  219 attggtaaagtacattaacatttaggtttataaatttcgatataannnnnnnnnnnnnaatctttgtaaacatttgctactatgttatttggcttcactt 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||             ||||||||||||||||||||||||||||||||||||||||||    
T  2064133 attggtaaagtacattaacatttaggtttataaatttcgatataatttttttatttttaatctttgtaaacatttgctactatgttatttggcttcactt 2064034  T
Q  319 ttgattttcctttgaggctttagaacaaaattaatgcaaatgagtagaggtatggtgattttgggatttagatcatgaatatttttaggaatgttaaatt 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2064033 ttgattttcctttgaggctttagaacaaaattaatgcaaatgagtagaggtatggtgattttgggatttagatcatgaatatttttaggaatgtt-aatt 2063935  T
Q  419 agatgaaatgatacaaggaattataatattggatcttgtaaaaaggcgcaccaattatggataannnnnnnnctttctctatacaaaaatattat-gggt 517  Q
    |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||         | |||||||||||||||||||| ||||    
T  2063934 agatgaaaagatacaaggaattataatattggatcttgtaaaaagacgcaccaattatggataattttttttttctctctatacaaaaatattatggggt 2063835  T
Q  518 tgtttt---tagtagtttgtattctttcttgccaattataatacaccatggttatgattatgnnnnnnnactaaaaatctctacttcaatctagattcta 614  Q
    ||||||   ||||||||||||||||||||||||||||||||||||||||| ||||| || |        |||| ||||||||||||||| ||||||||||    
T  2063834 tgtttttagtagtagtttgtattctttcttgccaattataatacaccatgattatgttttt------ttactagaaatctctacttcaaactagattcta 2063741  T
Q  615 tcatactcgatgatgaagtttttctttaaaagatctaaca 654  Q
    |||||||||||||| || |||||||||||||||| |||||    
T  2063740 tcatactcgatgataaaatttttctttaaaagatgtaaca 2063701  T

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