View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21154_low_2 (Length: 537)
Name: NF21154_low_2
Description: NF21154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21154_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 504; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 19 - 534
Target Start/End: Original strand, 2612491 - 2613006
Alignment:
| Q |
19 |
atgttttcttctactttttctaattggaagaagctgcagcctgttgtgaatgggatttgttcctttttccattctaccatgccaaaaagatattcgtcag |
118 |
Q |
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| T |
2612491 |
atgttttcttctactttttctaattggaagaagctgcagcctgttgtgaatgggatttgttcctttttccattctaccatgccaaaaagatattcgtcag |
2612590 |
T |
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| Q |
119 |
gcttgtaccatttatacttaggaaacaatacttaaatagcagaaaagcaataaatcttggaaaggaatatgacctaagtgccattttgccgccacagtta |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2612591 |
gcttgtaccatttatacttaggaaacaatacttaaatagcagaaaagcaataaatcttggaaaggaatatgacctaagtgccattttgccgccacagtta |
2612690 |
T |
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| Q |
219 |
aatcatctccctcgcatatatttttggctatgaatttcacattctggcccatgccagcagtaagctgctgtaagaaatgcatcacttcctgcaatgttat |
318 |
Q |
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| T |
2612691 |
aatcatctccctcacatatatttttgactatgaatttcacattctggcccatgccagcagtaagctgctgtaagaaatgcatcacttcctgcaatgttat |
2612790 |
T |
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| Q |
319 |
gtctagattatctggtgtagctatttactcgatgcaatcggggttacttctaggttattacaacttagaaggatggttgagatacaaaccttctttcctt |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2612791 |
gtctagattatctggtgtagctatttactcgatgcaatcggggttacttctaggttattacaacttagaaggatggttgagatacaaaccttctttcctt |
2612890 |
T |
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| Q |
419 |
gaaatggattgatgaaggtatagtcataaaagcaagcatcttgtgatatgtattcatccaattgttttagctctttctcattgatacatatgtagaagtg |
518 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
2612891 |
gaaatggattgatgaaggtatagtcataaaagcaagcatcttgtgatatgtattcatccaattgttttagctctttctcattgatacatgtgtagaagtg |
2612990 |
T |
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| Q |
519 |
atctactatctctgct |
534 |
Q |
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| T |
2612991 |
atctactatctctgct |
2613006 |
T |
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