View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21155_low_1 (Length: 494)
Name: NF21155_low_1
Description: NF21155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21155_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 18 - 453
Target Start/End: Complemental strand, 35604327 - 35603893
Alignment:
| Q |
18 |
accttctaccaccgtttatgggatgagattgaaggggaagtttattcctttgcttcctcttggctggcctccggtgtcttacctcccgctcttaatgcta |
117 |
Q |
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| T |
35604327 |
accttctaccaccgtttatgggatgagattgaaggggaagtttattcctttgcttcctcttggctggcctccggtgtcttacctcccgctcttaatgcta |
35604228 |
T |
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| Q |
118 |
ttcatattgttcttgcaccttaaggtgaaaacccgtagtctctgaaggacctccgccccttctttgtctactaactttctaaataaaactatctctaagg |
217 |
Q |
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| T |
35604227 |
ctcatattgttcttgcaccttaaggtgaaaacccgtagtctctgaaggacctccgccccttctttgtctac-aactttctaaataaaactatctctaagg |
35604129 |
T |
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| Q |
218 |
atcttgctaatcgcctaagaactttgatcaacaaatggatttcccacaaacaatcatatttcgtttcttcctgatcggtcatggacaacgctctcacgac |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
35604128 |
atcttgctaatcgcctaagaactttgatcaacaaatggatttcccacaaacaatcatatttctatccttcctgatcggtcatggacaacgctctcacgac |
35604029 |
T |
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| Q |
318 |
ctttaaaatcctctaccatatccatttcaaacataaagtaaaaataaaggaagtagctttgaaactcaacattttcaaagcttttaacatcatgagttgg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35604028 |
ctttaaaatcctctaccatatccatttcaaacataaagtaaaaataaaggaagtagctttgaaactcaacattttcaaagcttttaacatcatgagttgg |
35603929 |
T |
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| Q |
418 |
tcttacttgcaatccatcttgaatgagatgggtctc |
453 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
35603928 |
tcttacttgcaatccatcttgaatgagatgggtctc |
35603893 |
T |
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