View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21155_low_2 (Length: 442)

Name: NF21155_low_2
Description: NF21155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21155_low_2
NF21155_low_2
[»] chr4 (37 HSPs)
chr4 (96-442)||(2621184-2621530)
chr4 (19-104)||(2621608-2621693)
chr4 (97-226)||(2467224-2467356)
chr4 (96-226)||(2518914-2519044)
chr4 (96-227)||(2547225-2547356)
chr4 (157-226)||(5102326-5102395)
chr4 (351-442)||(5106337-5106428)
chr4 (157-216)||(5106558-5106617)
chr4 (328-442)||(2486229-2486343)
chr4 (328-442)||(5102110-5102224)
chr4 (96-209)||(2533994-2534107)
chr4 (336-434)||(2367707-2367805)
chr4 (328-389)||(2382562-2382623)
chr4 (164-228)||(2361198-2361262)
chr4 (96-144)||(2367982-2368030)
chr4 (96-144)||(2546825-2546873)
chr4 (96-144)||(5035303-5035351)
chr4 (96-144)||(5106633-5106681)
chr4 (96-200)||(12124526-12124630)
chr4 (100-191)||(2490813-2490904)
chr4 (19-100)||(2373677-2373761)
chr4 (328-442)||(2519155-2519269)
chr4 (340-442)||(2547466-2547568)
chr4 (349-442)||(2472035-2472128)
chr4 (96-189)||(2475961-2476054)
chr4 (253-442)||(2477421-2477604)
chr4 (96-144)||(2373548-2373596)
chr4 (164-224)||(2381630-2381690)
chr4 (334-434)||(2391036-2391136)
chr4 (164-224)||(2391258-2391318)
chr4 (96-144)||(2525436-2525484)
chr4 (256-315)||(2486145-2486204)
chr4 (340-442)||(2491062-2491164)
chr4 (19-99)||(2368114-2368197)
chr4 (164-217)||(2382747-2382800)
chr4 (164-217)||(2482529-2482582)
chr4 (174-211)||(2486066-2486103)
[»] chr7 (1 HSPs)
chr7 (349-442)||(2576419-2576512)
[»] chr1 (1 HSPs)
chr1 (349-434)||(15837994-15838079)
[»] chr6 (2 HSPs)
chr6 (163-226)||(6423906-6423969)
chr6 (164-226)||(10579090-10579152)


Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 96 - 442
Target Start/End: Complemental strand, 2621530 - 2621184
Alignment:
Q  96 ttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttgcggattttattgattcggtaacaagtgaaagatgtcaaatttttcatgttt 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||    
T  2621530 ttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttgcggattttattaattcggtaacaagtgagagatgtcaaatttttcatattt 2621431  T
Q  196 ttggagaaagctcgcaacccatctgtaggaatattgctatagcaatggaagaaagtaagcgatttgatgtctacagggaaagtggatatattagtaagaa 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2621430 ttggagaaagctcgcaacccatctgtaggaatattgctatagcaatggaagaaagtaagcgatttgatgtctacagggaaagtggatatattagtaagaa 2621331  T
Q  296 gctcgtcgaggtcactttctgtagagaagcccgtgatgttgagggatgtgatattagggaacctgtcgaagaggcgaggaatgaaagggatggttttatc 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2621330 gctcgtcgaggtcactttctgtagagaagcccgtgatgttgagggatgtgatattagggaacctgtcgaagaggcgaggaatgaaagggatggttttatc 2621231  T
Q  396 ggagattgtgatggagaaccgtagacggttggtgatggacaaaaact 442  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  2621230 ggagattgtgatggagaaccgtagacggttggtgatggacaaaaact 2621184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 2621608 - 2621693
Alignment:
Q  19 caaactccgcaaaattaatttatcaggtaatttcatcgatcgccaatatgttaactctctctgcaagaactgtaaccttcttcgag 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2621608 caaactccgcaaaattaatttatcaggtaatttcatcgatcgccaatatgttaactctctctgcaagaactgtaaccttcttcgag 2621693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 97 - 226
Target Start/End: Original strand, 2467224 - 2467356
Alignment:
Q  97 tcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttgcggattttattg---attcggtaacaagtgaaagatgtcaaatttttcatgt 193  Q
    |||||||||||||||||||||||||||| |||||| ||||| ||||||  ||| | |      ||||||||||||||||  ||||||||||||||||| |    
T  2467224 tcttcgagtaaagggaaacaatcagcaatgaagaaaagatcgttcttgtcgatatcaaaagcaattcggtaacaagtgagtgatgtcaaatttttcatct 2467323  T
Q  194 ttttggagaaagctcgcaacccatctgtaggaa 226  Q
     |||||||||||||||||||||||||| |||||    
T  2467324 ctttggagaaagctcgcaacccatctgcaggaa 2467356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 96 - 226
Target Start/End: Original strand, 2518914 - 2519044
Alignment:
Q  96 ttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttgcggattttattgattcggtaacaagtgaaagatgtcaaatttttcatgttt 195  Q
    ||||| ||||||||||||||||||||||| |||||| |||||||||||| |||| |  || |||   |||||||||| | ||||||||||||||||||||    
T  2518914 ttctttgagtaaagggaaacaatcagcaatgaagaagagatcattcttgtggatatatttcatttaataacaagtgagatatgtcaaatttttcatgttt 2519013  T
Q  196 ttggagaaagctcgcaacccatctgtaggaa 226  Q
    |  || |||||| ||||||| ||| ||||||    
T  2519014 tgagacaaagcttgcaacccttctttaggaa 2519044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 96 - 227
Target Start/End: Original strand, 2547225 - 2547356
Alignment:
Q  96 ttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttgcggattttattgattcggtaacaagtgaaagatgtcaaatttttcatgttt 195  Q
    |||||| |||||||||||||||||||||| |||||||| ||||||||||| |||     |||||  | ||||| ||| ||| |||||||||||||| |||    
T  2547225 ttcttcaagtaaagggaaacaatcagcaatgaagaataaatcattcttgctgataaaggtgattttggaacaaatgagagacgtcaaatttttcatcttt 2547324  T
Q  196 ttggagaaagctcgcaacccatctgtaggaat 227  Q
    |  || |||||||||||||||| || ||||||    
T  2547325 tcagacaaagctcgcaacccatttgcaggaat 2547356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 157 - 226
Target Start/End: Complemental strand, 5102395 - 5102326
Alignment:
Q  157 attcggtaacaagtgaaagatgtcaaatttttcatgtttttggagaaagctcgcaacccatctgtaggaa 226  Q
    |||||||||||||||| |||||||||||||||||| |||| |||||| ||||||||||| | ||||||||    
T  5102395 attcggtaacaagtgatagatgtcaaatttttcatcttttgggagaatgctcgcaacccttttgtaggaa 5102326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 351 - 442
Target Start/End: Complemental strand, 5106428 - 5106337
Alignment:
Q  351 agggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaact 442  Q
    ||||||||| | |||||||||| |||||||||||||||||| ||  | ||||||||  ||||| ||  ||||||||||||||||||||||||    
T  5106428 agggaaccttttgaagaggcgatgaatgaaagggatggtttgattagtgattgtgaccgagaatcgaggacggttggtgatggacaaaaact 5106337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 157 - 216
Target Start/End: Complemental strand, 5106617 - 5106558
Alignment:
Q  157 attcggtaacaagtgaaagatgtcaaatttttcatgtttttggagaaagctcgcaaccca 216  Q
    |||||||||||||||| |||||||||||||||||| |||  |||||||||||||||||||    
T  5106617 attcggtaacaagtgatagatgtcaaatttttcatctttagggagaaagctcgcaaccca 5106558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 328 - 442
Target Start/End: Original strand, 2486229 - 2486343
Alignment:
Q  328 gtgatgttgagggatgtgatattagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttgg 427  Q
    ||||| ||| ||||||| | |||||||||||  |  ||||| ||| ||| ||||||||| ||||| |||||||||||||  ||||| || ||||||||||    
T  2486229 gtgatattgtgggatgtaacattagggaacccataaaagagacgatgaaggaaagggattgttttctcggagattgtgaccgagaatcggagacggttgg 2486328  T
Q  428 tgatggacaaaaact 442  Q
    ||||||||| |||||    
T  2486329 tgatggacagaaact 2486343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 328 - 442
Target Start/End: Complemental strand, 5102224 - 5102110
Alignment:
Q  328 gtgatgttgagggatgtgatattagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttgg 427  Q
    ||||||||||| |||||||  ||||||||||| ||||| ||| ||||||||||||||||||||  ||| | ||||||||  ||||| || ||||  || |    
T  5102224 gtgatgttgagtgatgtgacgttagggaacctttcgaaaaggagaggaatgaaagggatggttcgatcagtgattgtgaccgagaatcgaagactattag 5102125  T
Q  428 tgatggacaaaaact 442  Q
    |||| ||||||||||    
T  5102124 tgatagacaaaaact 5102110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 96 - 209
Target Start/End: Original strand, 2533994 - 2534107
Alignment:
Q  96 ttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttgcggattttattgattcggtaacaagtgaaagatgtcaaatttttcatgttt 195  Q
    |||||| ||||||||||||||||||||||  ||||| ||||||||||||  ||| |   | ||| | |||||||||| |||||| ||||||||||| ||     
T  2533994 ttcttcaagtaaagggaaacaatcagcaatcaagaagagatcattcttgttgatatagctcatttgataacaagtgagagatgttaaatttttcatcttc 2534093  T
Q  196 ttggagaaagctcg 209  Q
    ||||| ||||||||    
T  2534094 ttggacaaagctcg 2534107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 336 - 434
Target Start/End: Complemental strand, 2367805 - 2367707
Alignment:
Q  336 gagggatgtgatattagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatgga 434  Q
    |||||||||||  || |||||||| | ||| ||||||  || ||||||||| ||||||||||| ||||  |||||||| || |||||||||||||||||    
T  2367805 gagggatgtgaggttggggaacctttggaaaaggcgataaaggaaagggattgttttatcggacattgctatggagaatcggagacggttggtgatgga 2367707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 328 - 389
Target Start/End: Complemental strand, 2382623 - 2382562
Alignment:
Q  328 gtgatgttgagggatgtgatattagggaacctgtcgaagaggcgaggaatgaaagggatggt 389  Q
    ||||| ||||||||||||| |||||||| |||   |||||||||||||||||||||||||||    
T  2382623 gtgatattgagggatgtgacattagggagccttcggaagaggcgaggaatgaaagggatggt 2382562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 2361262 - 2361198
Alignment:
Q  164 aacaagtgaaagatgtcaaatttttcatgtttttggagaaagctcgcaacccatctgtaggaata 228  Q
    ||||||||| |||||||||||||||||| |||||||| |||||||| | ||||  ||||||||||    
T  2361262 aacaagtgagagatgtcaaatttttcatttttttggacaaagctcgtagcccacttgtaggaata 2361198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 96 - 144
Target Start/End: Complemental strand, 2368030 - 2367982
Alignment:
Q  96 ttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttg 144  Q
    ||||||||||||||||||||||||||||| |||||| |||||| |||||    
T  2368030 ttcttcgagtaaagggaaacaatcagcaatgaagaagagatcactcttg 2367982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 96 - 144
Target Start/End: Original strand, 2546825 - 2546873
Alignment:
Q  96 ttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttg 144  Q
    ||||||||||||||| ||||||||||||| |||||||| ||||||||||    
T  2546825 ttcttcgagtaaaggaaaacaatcagcaatgaagaataaatcattcttg 2546873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 96 - 144
Target Start/End: Original strand, 5035303 - 5035351
Alignment:
Q  96 ttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttg 144  Q
    |||||||||||||||||||||||||||||  ||||| ||||||||||||    
T  5035303 ttcttcgagtaaagggaaacaatcagcaatcaagaaaagatcattcttg 5035351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 96 - 144
Target Start/End: Complemental strand, 5106681 - 5106633
Alignment:
Q  96 ttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttg 144  Q
    ||||||||||||||||||||||||||||| |||||| |||||| |||||    
T  5106681 ttcttcgagtaaagggaaacaatcagcaatgaagaagagatcactcttg 5106633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 96 - 200
Target Start/End: Original strand, 12124526 - 12124630
Alignment:
Q  96 ttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttgcggattttattgattcggtaacaagtgaaagatgtcaaatttttcatgttt 195  Q
    |||||| |||||||||||||||||||||| |||||| |||||| ||||  | ||   | | |||| | ||||||||| ||| |||||||||||||| |||    
T  12124526 ttcttctagtaaagggaaacaatcagcaatgaagaagagatcactctttagcatacaaatcattctggaacaagtgagagaggtcaaatttttcatcttt 12124625  T
Q  196 ttgga 200  Q
    |||||    
T  12124626 ttgga 12124630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 100 - 191
Target Start/End: Original strand, 2490813 - 2490904
Alignment:
Q  100 tcgagtaaagggaaacaatcagcaaggaagaatagatcattcttgcggattttattgattcggtaacaagtgaaagatgtcaaatttttcat 191  Q
    |||||||||||||||||||||||||  || || ||||||||||||  |||     | ||||| |||||||||| ||||||||||||||||||    
T  2490813 tcgagtaaagggaaacaatcagcaataaaaaagagatcattcttgttgataaacctcattcgataacaagtgagagatgtcaaatttttcat 2490904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 2373677 - 2373761
Alignment:
Q  19 caaactccgcaaaattaatttatcaggtaatttcatc---gatcgccaatatgttaactctctctgcaagaactgtaaccttctt 100  Q
    |||||||||||| ||||||||||||||||||| ||||   |||| ||||| | |||||| ||||| ||| || ||||||||||||    
T  2373677 caaactccgcaagattaatttatcaggtaattgcatcaaagatcaccaatctattaactatctcttcaaaaattgtaaccttctt 2373761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 328 - 442
Target Start/End: Original strand, 2519155 - 2519269
Alignment:
Q  328 gtgatgttgagggatgtgatattagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttgg 427  Q
    ||||||||||| ||||| |  || |||||||| || ||||| ||| ||| ||||||||| |||| ||| ||||||||||  ||| | || | ||||||||    
T  2519155 gtgatgttgagtgatgtaacgttggggaacctatcaaagagacgatgaaggaaagggattgtttgatctgagattgtgactgaggatcgaaaacggttgg 2519254  T
Q  428 tgatggacaaaaact 442  Q
    ||||||||| |||||    
T  2519255 tgatggacagaaact 2519269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 442
Target Start/End: Original strand, 2547466 - 2547568
Alignment:
Q  340 gatgtgatattagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaa 439  Q
    |||||||| ||||||||||| | ||||| | |||||| | || ||||| | | |  |||||||||||  |||||||| ||||||||||||||||||| ||    
T  2547466 gatgtgatgttagggaacctttggaagaagtgaggaagggaaaggatgatatgactggagattgtgactgagaaccggagacggttggtgatggacagaa 2547565  T
Q  440 act 442  Q
    |||    
T  2547566 act 2547568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 349 - 442
Target Start/End: Original strand, 2472035 - 2472128
Alignment:
Q  349 ttagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaact 442  Q
    ||||||||||| ||||||||| || ||| ||||||||| |||| |  | ||||||||| |||||| |  ||||| ||||||||||| |||||||    
T  2472035 ttagggaacctttcgaagaggtgatgaaggaaagggattgtttcacagtagattgtgagggagaatcagagacgattggtgatggagaaaaact 2472128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 96 - 189
Target Start/End: Original strand, 2475961 - 2476054
Alignment:
Q  96 ttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttgcggattttattgattcggtaacaagtgaaagatgtcaaatttttc 189  Q
    ||||||||||||||| || |||| ||| || ||||| ||||||| |||| |||| | |||  ||  ||||||||||| ||||||||||||||||    
T  2475961 ttcttcgagtaaaggaaagcaattagctagaaagaagagatcatccttgtggatataattctttttgtaacaagtgagagatgtcaaatttttc 2476054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 253 - 442
Target Start/End: Original strand, 2477421 - 2477604
Alignment:
Q  253 agcgatttgatgtctacagggaaagtggatatattagtaagaagctcgtcgaggtcactttctgtagagaagcccgtgatgttgagggatgtgatattag 352  Q
    |||||| ||| ||||| ||  ||||||||||| |  ||||||||||| || |||||||||||| | ||||     |||||||| ||||||||||  ||||    
T  2477421 agcgatctgaggtctatagctaaagtggatatttgggtaagaagctcatcaaggtcactttctct-gaga-----gtgatgtttagggatgtgacgttag 2477514  T
Q  353 ggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaact 442  Q
    ||||||| |  |||||  || ||| | |||||||||||| |||||| ||||| |  ||||| || |||| |||||| ||||||| |||||    
T  2477515 ggaacctttgaaagagaggatgaagggaagggatggtttgatcggaaattgtcacagagaatcgaagactgttggttatggacagaaact 2477604  T

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Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 96 - 144
Target Start/End: Complemental strand, 2373596 - 2373548
Alignment:
Q  96 ttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttg 144  Q
    ||||||||| ||||||||||||||||||| |||||| |||||| |||||    
T  2373596 ttcttcgagcaaagggaaacaatcagcaatgaagaagagatcactcttg 2373548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 164 - 224
Target Start/End: Complemental strand, 2381690 - 2381630
Alignment:
Q  164 aacaagtgaaagatgtcaaatttttcatgtttttggagaaagctcgcaacccatctgtagg 224  Q
    ||||||| | ||| |||||||||||||| |||||||| |||||||| ||||||||| ||||    
T  2381690 aacaagtaagagaggtcaaatttttcatctttttggacaaagctcggaacccatctttagg 2381630  T

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Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 334 - 434
Target Start/End: Complemental strand, 2391136 - 2391036
Alignment:
Q  334 ttgagggatgtgatattagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatgg 433  Q
    ||||||||||||| ||||| |||||  | |||||   |||||||||||||||||||||  | || |||| |||||||||| || |||  |||||||||||    
T  2391136 ttgagggatgtgacattagagaaccgttggaagatttgaggaatgaaagggatggtttgttgggtgattttgatggagaatcggagattgttggtgatgg 2391037  T
Q  434 a 434  Q
    |    
T  2391036 a 2391036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 164 - 224
Target Start/End: Complemental strand, 2391318 - 2391258
Alignment:
Q  164 aacaagtgaaagatgtcaaatttttcatgtttttggagaaagctcgcaacccatctgtagg 224  Q
    ||||||| | ||| |||||||||||||| |||||||| |||||||| ||||||||| ||||    
T  2391318 aacaagtaagagaggtcaaatttttcatctttttggacaaagctcggaacccatctttagg 2391258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 96 - 144
Target Start/End: Original strand, 2525436 - 2525484
Alignment:
Q  96 ttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttg 144  Q
    ||||||||||| ||||||||||||||||| |||||  ||||||||||||    
T  2525436 ttcttcgagtagagggaaacaatcagcaatgaagagcagatcattcttg 2525484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 315
Target Start/End: Original strand, 2486145 - 2486204
Alignment:
Q  256 gatttgatgtctacagggaaagtggatatattagtaagaagctcgtcgaggtcactttct 315  Q
    ||||||| ||| | |||||||||||| ||||  |||||||||||| ||||||||||||||    
T  2486145 gatttgaggtccaaagggaaagtggagatatgtgtaagaagctcgccgaggtcactttct 2486204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 442
Target Start/End: Original strand, 2491062 - 2491164
Alignment:
Q  340 gatgtgatattagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaa 439  Q
    ||||| || ||||||||||| || ||||| |||  || ||||||||| |||  ||||||||||||||  || || || |||||||| |||||||||| ||    
T  2491062 gatgtaatgttagggaacctttcaaagagacgattaaggaaagggattgttgcatcggagattgtgaccgaaaatcggagacggtttgtgatggacagaa 2491161  T
Q  440 act 442  Q
    |||    
T  2491162 act 2491164  T

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Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 99
Target Start/End: Original strand, 2368114 - 2368197
Alignment:
Q  19 caaactccgcaaaattaatttatcaggtaatt---tcatcgatcgccaatatgttaactctctctgcaagaactgtaaccttct 99  Q
    |||||||||||| ||||||||||| |||||||   |||  ||||| |||| | |||||| ||||| |||||||||| |||||||    
T  2368114 caaactccgcaagattaatttatctggtaattggatcaaagatcgacaatctattaactatctcttcaagaactgtgaccttct 2368197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 217
Target Start/End: Complemental strand, 2382800 - 2382747
Alignment:
Q  164 aacaagtgaaagatgtcaaatttttcatgtttttggagaaagctcgcaacccat 217  Q
    ||||| ||||||| ||||| |||||||| |||||||| ||||||||||| ||||    
T  2382800 aacaaatgaaagaagtcaattttttcatctttttggacaaagctcgcaatccat 2382747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 217
Target Start/End: Original strand, 2482529 - 2482582
Alignment:
Q  164 aacaagtgaaagatgtcaaatttttcatgtttttggagaaagctcgcaacccat 217  Q
    ||||||||| |||||||||||||||||| ||||| || | ||||| ||||||||    
T  2482529 aacaagtgagagatgtcaaatttttcatctttttagatagagctctcaacccat 2482582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 211
Target Start/End: Original strand, 2486066 - 2486103
Alignment:
Q  174 agatgtcaaatttttcatgtttttggagaaagctcgca 211  Q
    |||||||||||||||||| |||||||| ||||||||||    
T  2486066 agatgtcaaatttttcatctttttggacaaagctcgca 2486103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 349 - 442
Target Start/End: Complemental strand, 2576512 - 2576419
Alignment:
Q  349 ttagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaact 442  Q
    ||||||| ||| ||||||||||||  ||||||||||||||||  ||||| ||||||||  ||||| || ||||| ||||||||||| |||||||    
T  2576512 ttagggatcctttcgaagaggcgacaaatgaaagggatggttcaatcggtgattgtgaccgagaatcgaagacgattggtgatggataaaaact 2576419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 349 - 434
Target Start/End: Complemental strand, 15838079 - 15837994
Alignment:
Q  349 ttagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatgga 434  Q
    ||||||||||| | |||||||  ||||||||||||||| |||| |||   |||| ||| |||||| || |||||||||||||||||    
T  15838079 ttagggaacctttggaagaggttaggaatgaaagggattgtttgatctatgattttgagggagaatcggagacggttggtgatgga 15837994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 226
Target Start/End: Original strand, 6423906 - 6423969
Alignment:
Q  163 taacaagtgaaagatgtcaaatttttcatgtttttggagaaagctcgcaacccatctgtaggaa 226  Q
    |||||||||| ||| |||||| || | ||||||| |||||||||||||||||||| ||| ||||    
T  6423906 taacaagtgagagaggtcaaagttgttatgttttgggagaaagctcgcaacccatttgtgggaa 6423969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 164 - 226
Target Start/End: Complemental strand, 10579152 - 10579090
Alignment:
Q  164 aacaagtgaaagatgtcaaatttttcatgtttttggagaaagctcgcaacccatctgtaggaa 226  Q
    |||||||||||  ||||||| || | ||||||| |||||||||||| ||||||||||| ||||    
T  10579152 aacaagtgaaacttgtcaaagttgttatgttttgggagaaagctcgtaacccatctgtgggaa 10579090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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