View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21156_high_2 (Length: 417)
Name: NF21156_high_2
Description: NF21156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21156_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Original strand, 46290233 - 46290635
Alignment:
| Q |
1 |
aattgttacctggtaccctactgacacaagctgcaagtttctctgtgacaatgctttcagccaatttcttacctgcacaaaaccaataacatgcatcaaa |
100 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46290233 |
aattgttacctggtaccctattgacacaagctgcaagtttctcagtgacaatgctttcagccaatttcttacctgcacaaaaccaataacatgcatcaaa |
46290332 |
T |
|
| Q |
101 |
tcaaacaaacaatcacacaattaaattaattaaatacataa-gcttagaagatattaaaacaatgacgcgacctgcttctttgttgggaacagttacata |
199 |
Q |
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|||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
46290333 |
tcaaacaaacaatcacacaattaaattaattaaacacataaagcttagaagatattaaaacaatcacgcgacctgcttctttgttgggaacagttacata |
46290432 |
T |
|
| Q |
200 |
tacaacgatacttggaacagtggtgttattggtattcccttccattctaatgaaattgctactctttgttgaaaacctgctactcaatttggatctgaaa |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46290433 |
tacaacgatacttggaacagtggtgttattggtattcccttccattctgatgaaattgctactctttgttgaaaacctgctactcaatttggatctgaaa |
46290532 |
T |
|
| Q |
300 |
caaaacaacagaagcaattcaacaaaacatatagacagatagcaatgaatagaatttgagattga----acgcacgcactctgttttgagggcagaggaa |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
46290533 |
caaaacaacagaagcaattcaacaaaacatatagacagatagaaatgaatagaatttgagattgaacgcacgcacgcactctgttttgagggcagaggaa |
46290632 |
T |
|
| Q |
396 |
tac |
398 |
Q |
| |
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||| |
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| T |
46290633 |
tac |
46290635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 196; Significance: 1e-106; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 6 - 334
Target Start/End: Original strand, 2528052 - 2528384
Alignment:
| Q |
6 |
ttacctggtaccctactgacacaagctgcaagtttctctgtgacaatgctttcagccaatttcttacctgcacaaaaccaataacatgcatcaaatcaaa |
105 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
2528052 |
ttacctggtaccctattgacacaagctgcaagtttct--gtgacaatgctttcagccaatttcttacctgcacaa--ccaataacatgcatcaaatcaaa |
2528147 |
T |
|
| Q |
106 |
caaacaatcacacaattaaa-ttaattaaatacataagcttagaaga--tattaaaacaatgacgcgacctgcttctttgttgggaacagttacatatac |
202 |
Q |
| |
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|||||||||||| |||||| |||||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
2528148 |
caaacaatcacaacattaaaattaattaaatacataagccaagaagagatattaaaacaatcacgcgacctgcttctttgttgggaacagtaacatatac |
2528247 |
T |
|
| Q |
203 |
aacgatacttggaacagtggtgttattggtattcccttcc-----attctaatgaaattgctactctttgttgaaaacctgctactcaatttggatctga |
297 |
Q |
| |
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|| ||| |||||||||||||||||||| ||||||| ||| ||| |||||||||| || |||||||||||||||||||| ||||||| ||||||| |
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| T |
2528248 |
aaggatgcttggaacagtggtgttatttgtattcctgtccattatattataatgaaattactgttctttgttgaaaacctgctattcaatttagatctga |
2528347 |
T |
|
| Q |
298 |
aacaaaacaacagaagcaattcaacaaaacatataga |
334 |
Q |
| |
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|||||||||| |||||||||||||||||| ||||||| |
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|
| T |
2528348 |
aacaaaacaagagaagcaattcaacaaaatatataga |
2528384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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