View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21156_high_3 (Length: 393)
Name: NF21156_high_3
Description: NF21156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21156_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 177; Significance: 3e-95; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 36 - 341
Target Start/End: Complemental strand, 5954764 - 5954460
Alignment:
| Q |
36 |
tctttatatcccctaaactcaataatttaggcttaaatgtagtttgatcctcttatcatggtcaatcctcaatttttgtttccataannnnnnnatttcg |
135 |
Q |
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| T |
5954764 |
tctttatatcccctaaactcaataatttaggcttaaatgtagtttgatcctcttatcatggtcaatcctcaatttttgttcccatca-ttttttatttcg |
5954666 |
T |
|
| Q |
136 |
caattttggttcttggtaaacttgacgagcctttctctgttgttaaagctttccctgctgctaaggttcttgaccaaatatggnnnnnnnntgttgcaca |
235 |
Q |
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| T |
5954665 |
caattttggttcttggtaaacctgttgagcctttctctgttgttaaagctttccctgctgctaaggttcttgaccaaatatgg-aaaaaaatgttgcata |
5954567 |
T |
|
| Q |
236 |
aaagttttgaac-nnnnnnnnncctgtgaaggaaagtcaatgtggttgtcatcattgaatttgaattataaattaatatttccgtaattgtttgttgctt |
334 |
Q |
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|||||||||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |
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| T |
5954566 |
aaagttttgaacatttttttttccagtgaaggaaagtccatgtggttgtcatcattgaatttgaattataaattaatattttcgtaattgtttgttgttt |
5954467 |
T |
|
| Q |
335 |
tatgttc |
341 |
Q |
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||||||| |
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| T |
5954466 |
tatgttc |
5954460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 316
Target Start/End: Complemental strand, 5689655 - 5689613
Alignment:
| Q |
274 |
atgtggttgtcatcattgaatttgaattataaattaatatttc |
316 |
Q |
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| T |
5689655 |
atgtggttgtcatcattgaatttggaccataaattaatatttc |
5689613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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