View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21156_high_6 (Length: 239)
Name: NF21156_high_6
Description: NF21156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21156_high_6 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 70 - 224
Target Start/End: Original strand, 27098164 - 27098317
Alignment:
| Q |
70 |
tccgaatttccaaattaagatattagaaaatgagaatattattattaatcatactata---attatctcaaggtttattaaaaaagaaattatctcaagg |
166 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27098164 |
tccgaatttccaaattaagatattagaaaatgagaatattattattaatcatactataattattatctcaaggtttattaaaaaagaaattatctcaagg |
27098263 |
T |
|
| Q |
167 |
agaatttgaactctatatatcttacccatcttttgaagtaacaaatcggtcttttact |
224 |
Q |
| |
|
|||||| |||||| ||||||||| ||| ||||||||||||| ||||||||||||| |
|
|
| T |
27098264 |
agaattggaactc----tatcttacctatcatttgaagtaacaagtcggtcttttact |
27098317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 27098095 - 27098140
Alignment:
| Q |
5 |
catatcaattgattgattgccggagtaactccaaaatatcctttgt |
50 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27098095 |
catatcaattgattgattgccggagtaactccaaaatatcctttgt |
27098140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University