View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21156_low_4 (Length: 373)
Name: NF21156_low_4
Description: NF21156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21156_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 350
Target Start/End: Original strand, 34102604 - 34102952
Alignment:
| Q |
1 |
caaaaacaaccttaaatagcgtacaagtatcagttatgatacgagtatgagaaataaatagcgtacaagtgtgagattttggagtaatcacgagtgagga |
100 |
Q |
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| T |
34102604 |
caaaaacaaccttaaatagcgtacaagtgtcagttatgatacgagtatgagaaataaatagcgtacaagtgtgagattttggagtaatcacgagtgagga |
34102703 |
T |
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| Q |
101 |
tgttgtaaccggtggacatcctcgtatctgcggcgatgacacagtaatcggatccagcaattgcaacgcaagatctacaaaatacaaacaaataagggaa |
200 |
Q |
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| T |
34102704 |
tgttgtaaccggtggacatcctcgtatctgctgcgatgacacagtaatcggatccagcaattgcaacacaagatctacaaaatacaaacaaataagggaa |
34102803 |
T |
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| Q |
201 |
ttaaaaccnnnnnnnnnngttgattaaactgagaatagaagagagagtaccctaccctccattgttgtcatatggagaccaattagcgtgttgtttagtc |
300 |
Q |
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| T |
34102804 |
tttaaacc-aaaaaaatagttgattaaactgagaatagaagagagagtaccctaccctccattgttgtcatatggagaccaattagcgtgttgtttagtc |
34102902 |
T |
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| Q |
301 |
atgacgaaatttgggtgatgaacacaaaacagagaaagcgttaacaagaa |
350 |
Q |
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| T |
34102903 |
atgacgaaattagggtgatgaacacaaaacagagaaagcgttaagaagaa |
34102952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 56 - 181
Target Start/End: Original strand, 41874575 - 41874700
Alignment:
| Q |
56 |
aaatagcgtacaagtgtgagattttggagtaatcacgagtgaggatgttgtaaccggtggacatcctcgtatctgcggcgatgacacagtaatcggatcc |
155 |
Q |
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| T |
41874575 |
aaatagcttacaggtgagagattttggagtaatcgcgagtgaggatgttgtaaccggtggacatcctcgtatcagctgcaatcacacagtaatccgatcc |
41874674 |
T |
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| Q |
156 |
agcaattgcaacgcaagatctacaaa |
181 |
Q |
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| T |
41874675 |
agcaattgcgacacaagatctacaaa |
41874700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 253 - 303
Target Start/End: Original strand, 41874810 - 41874860
Alignment:
| Q |
253 |
taccctccattgttgtcatatggagaccaattagcgtgttgtttagtcatg |
303 |
Q |
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| T |
41874810 |
taccctccattgttgtcatatggagaccaattagcgtgttgtttagtcatg |
41874860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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