View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21156_low_5 (Length: 357)
Name: NF21156_low_5
Description: NF21156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21156_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 18 - 346
Target Start/End: Complemental strand, 34290387 - 34290059
Alignment:
| Q |
18 |
agaatgggactaatcaattaattaaaactgtccaatatcatctgcaagaaccattctactaagaggactaggcccaagtctctttctcctcatcacactc |
117 |
Q |
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| T |
34290387 |
agaatgggactaatcaattaattaaaactgtccaatatcatctgcaagaaccattctactaagaggactaggcccaagtctctttctcctcatcacactc |
34290288 |
T |
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| Q |
118 |
cttttcctaataacttccatttgatttcttcttctaatttgcatcatagcctcttcctcaataacaaaccttttcattaaaacatcatcagtcaatgatt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34290287 |
cttttcctaataacttccatttgatttcttcttctaatttgcatcatagcctcttcctcaataacaaaccttttcattaaaacatcatcagtcaatgatt |
34290188 |
T |
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| Q |
218 |
tacccctaaaaatccttcttgatccctctgtgctaagcctagcactatgagttctaatttcatgtgatgttgtttgcaatggttttgatgatctaggata |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34290187 |
tacccctaaaaatccttcttgatccctctgtgctaagcctagcactatgagttctaatttcatgtgatgttgtttgcaatggttttgatgatctaggata |
34290088 |
T |
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| Q |
318 |
actattgcttcttctaggtggaacttcat |
346 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
34290087 |
actattgcttcttctaggtggaacttcat |
34290059 |
T |
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