View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21156_low_9 (Length: 238)
Name: NF21156_low_9
Description: NF21156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21156_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 163; Significance: 3e-87; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 3729212 - 3728989
Alignment:
| Q |
1 |
caaaatttgtaaagttatgtatcatacaaaatcggaatttggttgtgttaaatctgcttgtaatgaagtctgcatcaacatagaacatgcaacttatggt |
100 |
Q |
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| T |
3729212 |
caaaatttgtaaagttatgcatcatacaaaatcggaatttggttgtgttaaatctgcttgtaatgaagtctgcatcaacatagaacatgcaacttatggt |
3729113 |
T |
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| Q |
101 |
tattgtgtgcctccaatcccatatttttcattttgcttctgctacttgaaatgttgagtataa--annnnnnnnnnnnnnaacaaaagagtataaatatt |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
3729112 |
tattgtgtgcctccaatcccatatttttcattttgcttctgctacttgaaatgttgagtataaatatatatattttttttgacaaaagagtataaatatt |
3729013 |
T |
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| Q |
199 |
ttagtggatggaaatggaaaatat |
222 |
Q |
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| T |
3729012 |
ttagtggatggaaatggaaaatat |
3728989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 58 - 147
Target Start/End: Complemental strand, 3736891 - 3736802
Alignment:
| Q |
58 |
ttgtaatgaagtctgcatcaacatagaacatgcaacttatggttattgtgtgcctccaatcccatatttttcattttgcttctgctactt |
147 |
Q |
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| T |
3736891 |
ttgtaatgaagtttgcatcaacaaagaccatgcaacttacggttattgtgtgccttcaatcccatatttttcattttgcttttgctactt |
3736802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 21 - 164
Target Start/End: Complemental strand, 3740302 - 3740159
Alignment:
| Q |
21 |
atcatacaaaatcggaatttggttgtgttaaatctgcttgtaatgaagtctgcatcaacatagaacatgcaacttatggttattgtgtgcctccaatccc |
120 |
Q |
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| T |
3740302 |
atcatacacaatcggagtatggttgtgacaagtcctcttgtaatgaagtatgcatcaacatagagcatgcaacttatggtgattgtcttcttccaaaccc |
3740203 |
T |
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| Q |
121 |
atatttttcattttgcttctgctacttgaaatgttgagtataaa |
164 |
Q |
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| T |
3740202 |
atatttttcattttgctactgcttatataaatgttgagcataaa |
3740159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 222
Target Start/End: Complemental strand, 3740159 - 3740127
Alignment:
| Q |
190 |
ataaatattttagtggatggaaatggaaaatat |
222 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
3740159 |
ataaatattttagtggatggaaatggaaaatat |
3740127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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