View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21157_high_1 (Length: 601)
Name: NF21157_high_1
Description: NF21157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21157_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 481; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 15 - 584
Target Start/End: Original strand, 17601633 - 17602196
Alignment:
| Q |
15 |
cacagaccaaagaaacaaaacactaccaacaacaataacaatattaaggatatcttagcttcacttatgcttttagaagaagaagaaaccatagaacaaa |
114 |
Q |
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| T |
17601633 |
cacaaaccaaagaaacaaaacactaccaacaacaataacaatattaaggatatcttagcttcacttatgcttttagaagaagaagaaaccatagaacaaa |
17601732 |
T |
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| Q |
115 |
agaagtacttattagattcacaacaacatagagatatgttcaattcaaatttcaacaaccaaacacaaaccatgaatcattacatggaagaacttcaaaa |
214 |
Q |
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| T |
17601733 |
agaagtacttattagattcacaacaacatagagatatgttcaattcaaatttcaacaaccaaacacaaaccatgaatcattacatggaagaacttcaaaa |
17601832 |
T |
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| Q |
215 |
ccattactctcagctagaccaacatcatcaaacaaccacnnnnnnngctcgtatgtctgctattacagctgcttcagctattgtatctggtattggtcca |
314 |
Q |
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|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
17601833 |
ccattactctcagctagaccaacatcatcaaacaacaacaaaaaaagctcgtatgtctgctattacagctgcttcagctattgtatc------tggtcca |
17601926 |
T |
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| Q |
315 |
gaccaacgtggtctggaccagcccggtacagattcaaaagatattatcaaccagcagcctattcaacgtaggctgtgggtgaaagaccggcctaaagact |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17601927 |
gaccaacgtggtctggaccagcccggtacagattcaaaagatattatcaaccagcagcctattcaacgtaggctgtgggtgaaagaccggcctaaagact |
17602026 |
T |
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| Q |
415 |
ggtgggagagctgcaaccgtgaagatttcccggacgatgaatttcggcgatgttttcgaatgagtnnnnnnnctttcaacatgatctgcaatgagctgga |
514 |
Q |
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|||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||||| |
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| T |
17602027 |
ggtgggagagttgcaaccgtgaagacttcccggacgatgaattccggcgatgttttcggatgagtaaacaaactttcaacatgatctgcaatgagctgga |
17602126 |
T |
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| Q |
515 |
ttcatcggtaacgaagaaaaacacgacgcttcgagatgctattccggttcgccagcgcgtggcggtatgt |
584 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17602127 |
ttcatcggtaacgaagaaaaacacgacgcttcgagatgctattccggttcgccagcgcgtggcggtatgt |
17602196 |
T |
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