View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21157_high_10 (Length: 270)
Name: NF21157_high_10
Description: NF21157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21157_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 35800348 - 35800605
Alignment:
| Q |
1 |
catattgttattgtgattaagtacaagtttgaaaccgcagttggttggttgattctcgtatcctaaggtagaagttacacttctaagaaaagtatgtttt |
100 |
Q |
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| T |
35800348 |
catattgatattgtgattaagtacaagtttgaaaccg----tggttggttgattctcgtatcccaaggtagaagttacacttctaagaaaagtatgtttt |
35800443 |
T |
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| Q |
101 |
atatttgtaaaaattattgtaaaaaatatgaaggttacaaagacggactcttatgattgttacaaagttagaaaattagttcgcaacattttcatgaata |
200 |
Q |
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| T |
35800444 |
atatttgtaaaaattattctaaaaaatatgaaggttacaaagacggactcttatgattattacaaagttagaaaattagttcgcaacattttcatgaata |
35800543 |
T |
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| Q |
201 |
aaattgttctcaacaaattcaaaggttatccaaagaggataaaagacttcatagtgatgatg |
262 |
Q |
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| T |
35800544 |
aaattgttctcaacaaactcaaaggttatccgaagaggataaaggacttcatagtggtgatg |
35800605 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 178
Target Start/End: Complemental strand, 13513083 - 13513039
Alignment:
| Q |
134 |
gttacaaagacggactcttatgattgttacaaagttagaaaatta |
178 |
Q |
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| T |
13513083 |
gttacaaagatggactcttgtgcttgctacaaagttagaaaatta |
13513039 |
T |
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