View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21157_high_16 (Length: 241)
Name: NF21157_high_16
Description: NF21157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21157_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 10 - 102
Target Start/End: Complemental strand, 43899890 - 43899798
Alignment:
| Q |
10 |
ttcaacaaagagatttgattaagttaagaaagaatttggaaagacgagattggattttctagatattggccaagtatcaagattgatcatcac |
102 |
Q |
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| T |
43899890 |
ttcaacaaagagatttgattaagttaagaaagaatttggaaagacgagattggattttctagatattggccaagtatcaagattgatcatcac |
43899798 |
T |
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Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 176 - 224
Target Start/End: Complemental strand, 43899725 - 43899677
Alignment:
| Q |
176 |
caggcaaggatttttggcacgcaagtaaatgcacacatccattcacctt |
224 |
Q |
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| T |
43899725 |
caggcaaggatttttggcacgcaagtaaatgcacacgtccattcacctt |
43899677 |
T |
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