View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21157_high_4 (Length: 472)
Name: NF21157_high_4
Description: NF21157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21157_high_4 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 74 - 472
Target Start/End: Complemental strand, 21663806 - 21663408
Alignment:
| Q |
74 |
atacggacgttgacacgccgatactattaataatttaaaaataataaataatgcagtttaattatatgtgttggtatcatatcgatgtcagacacgtcta |
173 |
Q |
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|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| | ||||||||| | ||| |
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| T |
21663806 |
atacggacgttgacacgctgatattattaataatttaaaaataataaataatgcagtataattatatgtgtcggtatcatattggtgtcagacatgccta |
21663707 |
T |
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| Q |
174 |
atcccaaaagtgtgggtgtttgatagaacaaaacgttaatttaaattcaaattacctctaacaccagcattattgatcaacgcatcaatatgtccaaaag |
273 |
Q |
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||| ||||||||||| || |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21663706 |
atctcaaaagtgtggatgcttgatagagcaaaacattaatttaaattcaaattacctctaacaccagcattattgatcaacgcatcaatatgtccaaaag |
21663607 |
T |
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| Q |
274 |
cctcccatgccttctgcacatacttctctatagctccaccatcatccgccacatcaagctccactgcaacggcacggagacttcccgcctttccattgat |
373 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||| ||||| ||||||||||||| |
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| T |
21663606 |
cctcccatgccttctgcacatacttctctatagctccaccatcagccgccacatcaagctccaccgcaacagcacggagccttccatcctttccattgat |
21663507 |
T |
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| Q |
374 |
ttcatcacacaatgactgtaaacgatctacacgacgagccgccgcgatcacaaaacatcctgcacgagcgagatcaaggcagaaatcacggccgattcc |
472 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
21663506 |
ttcatcacacaatgactgtaaacgatctacacgacgagccgccgcgatcacaaaacatcctgcacgagcgagatcgaggcagaaatcacggccgattcc |
21663408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 74 - 472
Target Start/End: Complemental strand, 21672570 - 21672172
Alignment:
| Q |
74 |
atacggacgttgacacgccgatactattaataatttaaaaataataaataatgcagtttaattatatgtgttggtatcatatcgatgtcagacacgtcta |
173 |
Q |
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|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| | ||||||||| | ||| |
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| T |
21672570 |
atacggacgttgacacgctgatattattaataatttaaaaataataaataatgcagtataattatatgtgtcggtatcatattggtgtcagacatgccta |
21672471 |
T |
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| Q |
174 |
atcccaaaagtgtgggtgtttgatagaacaaaacgttaatttaaattcaaattacctctaacaccagcattattgatcaacgcatcaatatgtccaaaag |
273 |
Q |
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||| ||||||||||| || |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21672470 |
atctcaaaagtgtggatgcttgatagagcaaaacattaatttaaattcaaattacctctaacaccagcattattgatcaacgcatcaatatgtccaaaag |
21672371 |
T |
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| Q |
274 |
cctcccatgccttctgcacatacttctctatagctccaccatcatccgccacatcaagctccactgcaacggcacggagacttcccgcctttccattgat |
373 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||| ||||| ||||||||||||| |
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| T |
21672370 |
cctcccatgccttctgcacatacttctctatagctccaccatcagccgccacatcaagctccaccgcaacagcacggagccttccatcctttccattgat |
21672271 |
T |
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| Q |
374 |
ttcatcacacaatgactgtaaacgatctacacgacgagccgccgcgatcacaaaacatcctgcacgagcgagatcaaggcagaaatcacggccgattcc |
472 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
21672270 |
ttcatcacacaatgactgtaaacgatctacacgacgagccgccgcgatcacaaaacatcctgcacgagcgagatcgaggcagaaatcacggccgattcc |
21672172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 202 - 468
Target Start/End: Complemental strand, 21658764 - 21658498
Alignment:
| Q |
202 |
caaaacgttaatttaaattcaaattacctctaacaccagcattattgatcaacgcatcaatatgtccaaaagcctcccatgccttctgcacatacttctc |
301 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21658764 |
caaaacgttaatttaaactcaaattacctctaacaccagcattattgatcaacgcatcaatatgtccaaaagcctcccatgccttctgcacatacttctc |
21658665 |
T |
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| Q |
302 |
tatagctccaccatcatccgccacatcaagctccactgcaacggcacggagacttcccgcctttccattgatttcatcacacaatgactgtaaacgatct |
401 |
Q |
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|||||||||||||||| ||||||||||||||||||| ||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
21658664 |
tatagctccaccatcagccgccacatcaagctccaccgcaacagcacggagccttccatcctttccattgatttcatcacacaatgactgtaaacgatct |
21658565 |
T |
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| Q |
402 |
acacgacgagccgccgcgatcacaaaacatcctgcacgagcgagatcaaggcagaaatcacggccga |
468 |
Q |
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||||||||||||||||| |||||| |||||| |||| ||||||||| ||||||||||||||||||| |
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| T |
21658564 |
acacgacgagccgccgcaatcacattacatccagcaccagcgagatcgaggcagaaatcacggccga |
21658498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 42
Target Start/End: Complemental strand, 21663871 - 21663838
Alignment:
| Q |
9 |
acatcatcaaaacttatgaagaacagatactaac |
42 |
Q |
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|||||| ||||||||||||||||||||||||||| |
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| T |
21663871 |
acatcaccaaaacttatgaagaacagatactaac |
21663838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 42
Target Start/End: Complemental strand, 21672635 - 21672602
Alignment:
| Q |
9 |
acatcatcaaaacttatgaagaacagatactaac |
42 |
Q |
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|||||| ||||||||||||||||||||||||||| |
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| T |
21672635 |
acatcaccaaaacttatgaagaacagatactaac |
21672602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 228 - 292
Target Start/End: Complemental strand, 19977215 - 19977151
Alignment:
| Q |
228 |
cctctaacaccagcattattgatcaacgcatcaatatgtccaaaagcctcccatgccttctgcac |
292 |
Q |
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||||||||||||||||| || ||||| | ||||||||| ||||| || ||||| ||||| ||||| |
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| T |
19977215 |
cctctaacaccagcattgttaatcaatgtatcaatatgcccaaaggcatcccacgccttatgcac |
19977151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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