View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21157_high_6 (Length: 372)
Name: NF21157_high_6
Description: NF21157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21157_high_6 |
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| [»] scaffold0171 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 3 - 359
Target Start/End: Complemental strand, 36734609 - 36734247
Alignment:
| Q |
3 |
aactagatatcgactatgtaagtcaatcaatgatcacggctgttagattaagataagaagtttcatgtttcaagttcgccaattatattttaaaaacaaa |
102 |
Q |
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| T |
36734609 |
aactagatatcgactatttaagtcaatcaatgatcacggccgttagatcaagataagaagtttcatgtttcaagttcgccaattatattttaaaaacaaa |
36734510 |
T |
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| Q |
103 |
atcaaaatacga------gtgcatataatgtaaatctgagtcacttgtcacttaccaagatgaaggcttttatgttctccattttcaatttgatttcaga |
196 |
Q |
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| T |
36734509 |
atcaaaatacgatctagagtgcatataatgtaaatctgagtcacttgtcacttaccaagatgaaggcttttatgttctccattttcaatttgatttcaga |
36734410 |
T |
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| Q |
197 |
gctctcatcttcaagaatatccaataaaatatcaagtagatccttaatttgaccttctcctccaccaacttcctttctcctcctccttacttcttgatgc |
296 |
Q |
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| T |
36734409 |
gctctcatcttcaagaatatccaataaaatatcaagtagatccttaatttgaccttctcctccaccaacttcttttctcctcctccttacttcttgatgc |
36734310 |
T |
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| Q |
297 |
tccttgataatcctctccatcatagaatcaaacctgtccctaatttcctttaaccctttgcta |
359 |
Q |
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| T |
36734309 |
tccttgataatcctctccatcatagaatcaaacctgtccctaatttcctctaaccctttgcta |
36734247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0171
Description:
Target: scaffold0171; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 243
Target Start/End: Complemental strand, 24649 - 24587
Alignment:
| Q |
181 |
tcaatttgatttcagagctctcatcttcaagaatatccaataaaatatcaagtagatccttaa |
243 |
Q |
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||||||| |||||| ||||||||||||| |||| ||||| ||||||||||| | |||||||| |
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| T |
24649 |
tcaattttatttcactgctctcatcttcatgaatttccaacaaaatatcaagcaaatccttaa |
24587 |
T |
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