View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21157_high_9 (Length: 312)
Name: NF21157_high_9
Description: NF21157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21157_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 19 - 295
Target Start/End: Original strand, 47840148 - 47840424
Alignment:
| Q |
19 |
ggacggtgactttttggcagctgtgagacaactattgataacattggtaccttaaaaaatttgtgtttttggttggcgattgcttcaagagaaaatgaca |
118 |
Q |
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| T |
47840148 |
ggacggtgactttttggcagctgtgagacaactattgataacattggtaccttaaaaaatttgtgtttttggttggcgattgcttcaagagaaaatgaca |
47840247 |
T |
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| Q |
119 |
ataagattcatcaacaaagttgtgnnnnnnnctttaatgaaatcgagacagagggacatttgtttgtaatgtatccgaaaaccaaggagattcggaattt |
218 |
Q |
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| T |
47840248 |
ataagattcatcagcaaagttgtgtttttttctttaatgaaatcgagacagagggacatttgtttgtaatgtatccgaaaaccaaggagattcggaattt |
47840347 |
T |
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| Q |
219 |
gatttttaagtggatgaagtggaatgcaataggatggcgtgaagagttgatagaaaaattccttgttgttcatctca |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
47840348 |
gatttttaagtggatgaagtggaatgcaataggatggcgtgaagagttgatagaaaaattccttgttgttcaactca |
47840424 |
T |
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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 219 - 270
Target Start/End: Original strand, 26322641 - 26322692
Alignment:
| Q |
219 |
gatttttaagtggatgaagtggaatgcaataggatggcgtgaagagttgata |
270 |
Q |
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| T |
26322641 |
gatttttaattggatgaagtggaatgcaataggttggggagaagagttgata |
26322692 |
T |
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