View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21157_low_12 (Length: 269)
Name: NF21157_low_12
Description: NF21157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21157_low_12 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 7 - 269
Target Start/End: Original strand, 35800054 - 35800316
Alignment:
| Q |
7 |
tccaagaatataaccaaaactaagtgcattggattgattattttgctgatctggatcaacatgaactaaatcaatgtatttaatctggtatggttcgggt |
106 |
Q |
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| T |
35800054 |
tccaaaaatataaccaaaactaagtgcattggattgattattttgctgatcgggatcaacatgaactaaatcaatgtattcaatctggtatggttcgggt |
35800153 |
T |
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| Q |
107 |
tcataagaggagcgttagcaactctctatttttaacactcactctaatattaacttttttataagataaaattcatgtaagtctcatcactctatatgaa |
206 |
Q |
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| T |
35800154 |
tcataagaggagcgttagcaactctctatttttaacactcactctaacgttaacttttttataagataaaactcatgtaagtcttatcactctataggaa |
35800253 |
T |
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| Q |
207 |
ccaatttttaaagtatgaatcatacataagtttcatgaaataagagaatgagtgttagagcgt |
269 |
Q |
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| T |
35800254 |
ataatttctaaagtatggatcatacataagtttcatgaaataagagaatgagtattagagcgt |
35800316 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 120 - 157
Target Start/End: Original strand, 30742542 - 30742579
Alignment:
| Q |
120 |
gttagcaactctctatttttaacactcactctaatatt |
157 |
Q |
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| T |
30742542 |
gttagcaacactctattttgaacactcactctaatatt |
30742579 |
T |
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