View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21157_low_13 (Length: 265)
Name: NF21157_low_13
Description: NF21157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21157_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 72; Significance: 8e-33; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 160 - 247
Target Start/End: Original strand, 32206801 - 32206888
Alignment:
| Q |
160 |
aaactaaaatgattgtttcaaaatttcaacaggtgacactttcaggactgttgaatgcgacagatggtctttggtcatgctgtggaga |
247 |
Q |
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| T |
32206801 |
aaactaaaatgtttgtttcaaaatttcaacaggtgacactttcaggactgttgaatgcagtagatggtctttggtcatgctgtggaga |
32206888 |
T |
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Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 185 - 248
Target Start/End: Complemental strand, 32182680 - 32182617
Alignment:
| Q |
185 |
tcaacaggtgacactttcaggactgttgaatgcgacagatggtctttggtcatgctgtggagag |
248 |
Q |
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| T |
32182680 |
tcaacaggtgacactttcaggactattgaatgcgacagatggtctttggtcatgttgtggagag |
32182617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 185 - 247
Target Start/End: Complemental strand, 32156818 - 32156756
Alignment:
| Q |
185 |
tcaacaggtgacactttcaggactgttgaatgcgacagatggtctttggtcatgctgtggaga |
247 |
Q |
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| T |
32156818 |
tcaacaggtgacactttcaggactattgaatgcagtagatggtctttggtcatgctgtggaga |
32156756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 183 - 247
Target Start/End: Complemental strand, 32110636 - 32110572
Alignment:
| Q |
183 |
tttcaacaggtgacactttcaggactgttgaatgcgacagatggtctttggtcatgctgtggaga |
247 |
Q |
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| T |
32110636 |
tttcaacagatgacactttcaggactattgaatgcagtagatggtctttggtcatgctgtggaga |
32110572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 185 - 247
Target Start/End: Complemental strand, 32174594 - 32174532
Alignment:
| Q |
185 |
tcaacaggtgacactttcaggactgttgaatgcgacagatggtctttggtcatgctgtggaga |
247 |
Q |
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| T |
32174594 |
tcaacaggtgacactttcaggactattgaatgcagtagatggtctttggtcgtgctgtggaga |
32174532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 183 - 247
Target Start/End: Complemental strand, 32157930 - 32157866
Alignment:
| Q |
183 |
tttcaacaggtgacactttcaggactgttgaatgcgacagatggtctttggtcatgctgtggaga |
247 |
Q |
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| T |
32157930 |
tttctacagatgacactttcgggactattgaatgcgacagatggtctctggtcgtgctgtggaga |
32157866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 185 - 247
Target Start/End: Complemental strand, 32118898 - 32118836
Alignment:
| Q |
185 |
tcaacaggtgacactttcaggactgttgaatgcgacagatggtctttggtcatgctgtggaga |
247 |
Q |
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| T |
32118898 |
tcaacaggtgacactttcaggactattgaatgctgttgatggtctttggtcatgctgcggaga |
32118836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 247
Target Start/End: Original strand, 32211899 - 32211963
Alignment:
| Q |
183 |
tttcaacaggtgacactttcaggactgttgaatgcgacagatggtctttggtcatgctgtggaga |
247 |
Q |
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|||| |||| |||||||||| ||||| |||||||| ||||||||||||||| ||||||||||| |
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| T |
32211899 |
tttctacagatgacactttcgggactattgaatgcagtagatggtctttggtcgtgctgtggaga |
32211963 |
T |
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