View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21157_low_14 (Length: 264)
Name: NF21157_low_14
Description: NF21157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21157_low_14 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 47840659 - 47840396
Alignment:
| Q |
1 |
ggaattaacacaaaaaacaccatctgaaataaataatagcagctccagaaccctgaagcagcacagataaaccaagaccatggaaaacgaattatacgat |
100 |
Q |
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| T |
47840659 |
ggaattaacacaaaaaacaccatctgaaataaataatagcagctccagaaccctgaagcaacacaaataaaccaagaccatggaaaatgaattatacgat |
47840560 |
T |
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| Q |
101 |
ccactagctccgaaatattagccacttttccatttaaaaggacatcatttttctccaaccatatgcaccacacgtccacaacgttgttacacaaattaaa |
200 |
Q |
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| T |
47840559 |
ccactagctccgaaatattagccacttttccatttaaaaggacatcatttttctccaaccatatgcaccacacgtccacaacgttgttacacaaattaaa |
47840460 |
T |
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| Q |
201 |
tgagaaactcttttacctctcttcccttttccgactgagttgaacaacaaggaatttttctatc |
264 |
Q |
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| T |
47840459 |
tgagaaactcttttacctctcttcccttttccgactgagttgaacaacaaggaatttttctatc |
47840396 |
T |
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